Wall clock time and date at job start Wed Apr 1 2020 00:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46814 * 2 1 4 4 C 1.38208 * 119.51257 * 90.00014 * 3 2 1 5 5 N 1.31483 * 131.76720 * 359.95629 * 4 3 2 6 6 N 1.28532 * 109.89414 * 179.75065 * 5 4 3 7 7 C 1.30436 * 110.10990 * 0.45142 * 6 5 4 8 8 C 1.50702 * 126.42659 * 179.82425 * 7 6 5 9 9 N 1.46898 * 109.47245 * 96.82705 * 8 7 6 10 10 C 1.46905 * 110.99828 * 293.95158 * 9 8 7 11 11 C 1.46900 * 111.00079 * 170.00349 * 9 8 7 12 12 C 1.50707 * 109.46924 * 190.00000 * 11 9 8 13 13 H 1.07994 * 120.00049 * 359.97438 * 12 11 9 14 14 C 1.37880 * 119.99608 * 179.97438 * 12 11 9 15 15 N 1.31507 * 120.00034 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99798 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47073 * 59.99750 * 16 14 12 18 18 H 1.48496 * 109.47225 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46822 * 299.99998 * 16 14 12 20 20 N 1.36464 * 121.45233 * 179.97438 * 4 3 2 21 21 C 1.38904 * 120.92911 * 359.96235 * 20 4 3 22 22 C 1.38664 * 121.31191 * 179.97438 * 21 20 4 23 23 C 1.38067 * 119.87974 * 180.02562 * 22 21 20 24 24 C 1.38612 * 120.59441 * 0.04707 * 23 22 21 25 25 C 1.37895 * 120.34433 * 359.97438 * 24 23 22 26 26 C 1.39358 * 119.60875 * 0.02562 * 25 24 23 27 27 C 1.34935 * 119.50721 * 269.97473 * 3 2 1 28 28 O 1.21638 * 120.57411 * 0.05427 * 27 3 2 29 29 H 1.09004 * 109.47247 * 299.99833 * 1 2 3 30 30 H 1.08992 * 109.47194 * 60.00202 * 1 2 3 31 31 H 1.09000 * 109.46984 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46961 * 239.99754 * 2 1 3 33 33 H 1.09005 * 109.46965 * 119.99753 * 2 1 3 34 34 H 1.08999 * 109.47352 * 336.82507 * 8 7 6 35 35 H 1.09001 * 109.47001 * 216.82285 * 8 7 6 36 36 H 1.08997 * 109.47272 * 296.04881 * 10 9 8 37 37 H 1.09000 * 109.47187 * 56.04813 * 10 9 8 38 38 H 1.09003 * 109.47355 * 176.04536 * 10 9 8 39 39 H 1.08994 * 109.47486 * 69.99522 * 11 9 8 40 40 H 1.09000 * 109.46683 * 309.99384 * 11 9 8 41 41 H 0.96999 * 119.99960 * 180.02562 * 15 14 12 42 42 H 1.08001 * 120.06593 * 0.06199 * 22 21 20 43 43 H 1.07996 * 119.70100 * 180.02562 * 23 22 21 44 44 H 1.08001 * 119.82891 * 179.97438 * 24 23 22 45 45 H 1.08007 * 120.19369 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2452 2.0232 1.2027 5 7 2.1039 1.6256 2.4480 6 7 2.4439 2.5706 3.2502 7 6 2.8107 3.6233 2.5730 8 6 3.2756 4.9378 3.1449 9 7 4.7440 4.9681 3.1721 10 6 5.2737 3.9712 4.1121 11 6 5.2370 6.3130 3.4980 12 6 6.7268 6.3689 3.2780 13 1 7.2547 5.4929 2.9312 14 6 7.4159 7.5385 3.5195 15 7 6.7729 8.6053 3.9412 16 14 9.2627 7.6077 3.2475 17 1 9.5656 7.2995 1.8267 18 1 9.7608 8.9676 3.5756 19 1 9.9296 6.6109 4.1233 20 7 2.7003 3.3089 1.2489 21 6 2.9528 4.0192 0.0823 22 6 3.4147 5.3261 0.1199 23 6 3.6555 6.0047 -1.0581 24 6 3.4387 5.3919 -2.2823 25 6 2.9791 4.0930 -2.3394 26 6 2.7323 3.3974 -1.1574 27 6 2.2403 2.0077 -1.1743 28 8 2.0376 1.4359 -2.2286 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 2.8911 5.0494 4.1586 35 1 2.9069 5.7547 2.5244 36 1 4.9586 4.2231 5.1247 37 1 4.8932 2.9845 3.8481 38 1 6.3626 3.9662 4.0612 39 1 5.0149 6.5385 4.5410 40 1 4.7472 7.0449 2.8557 41 1 7.2576 9.4283 4.1108 42 1 3.5865 5.8121 1.0690 43 1 4.0157 7.0223 -1.0254 44 1 3.6307 5.9344 -3.1962 45 1 2.8106 3.6180 -3.2947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133297485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:02 Heat of formation + Delta-G solvation = 104.724225 kcal Electronic energy + Delta-G solvation = -30247.946924 eV Core-core repulsion = 26267.868514 eV Total energy + Delta-G solvation = -3980.078410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.68612 -40.76309 -39.04378 -37.00797 -36.54978 -35.17310 -32.89799 -32.24525 -30.97623 -30.24487 -30.13910 -27.57900 -27.08590 -25.24709 -24.57853 -23.52495 -23.35356 -22.65430 -21.05429 -20.36994 -19.65161 -19.09247 -17.41039 -17.19737 -16.75988 -16.40781 -16.00426 -15.47398 -15.03824 -14.87469 -14.77382 -14.51470 -14.32326 -14.08102 -13.98778 -13.79071 -13.66111 -12.92701 -12.68958 -12.43579 -12.37604 -12.06521 -11.99008 -11.66152 -11.53993 -11.48912 -11.38897 -11.24034 -11.02197 -10.96533 -10.80632 -10.74717 -10.59326 -10.28167 -10.01400 -9.42542 -9.39981 -8.81060 -8.56734 -8.44242 -7.56363 -6.15481 -4.17352 0.31593 0.69645 1.62590 1.72687 2.31340 2.36859 2.80164 3.26145 3.30878 3.33771 3.53791 3.76431 3.94892 4.28667 4.37302 4.49895 4.56180 4.75726 4.78450 4.87104 4.92587 4.96274 5.06156 5.12357 5.21244 5.21601 5.37520 5.46679 5.52839 5.59678 5.72145 5.81238 5.89895 5.91408 6.01353 6.06215 6.08924 6.17639 6.27348 6.35127 6.50095 6.68501 6.88175 7.00254 7.14071 7.41982 7.59308 7.81171 7.96593 8.31436 8.53202 8.89312 9.47588 10.95087 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014012 B = 0.003604 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.874462 B = 7767.154461 C = 9007.497879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 N -0.506 5.506 4 C 0.399 3.601 5 N -0.294 5.294 6 N -0.260 5.260 7 C 0.222 3.778 8 C 0.126 3.874 9 N -0.538 5.538 10 C 0.038 3.962 11 C 0.194 3.806 12 C -0.510 4.510 13 H 0.063 0.937 14 C 0.059 3.941 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.426 5.426 21 C 0.173 3.827 22 C -0.122 4.122 23 C -0.053 4.053 24 C -0.133 4.133 25 C -0.033 4.033 26 C -0.167 4.167 27 C 0.569 3.431 28 O -0.504 6.504 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.022 0.978 37 H 0.047 0.953 38 H 0.076 0.924 39 H -0.001 1.001 40 H 0.031 0.969 41 H 0.263 0.737 42 H 0.161 0.839 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.086 -8.761 -10.913 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.235 5.235 4 C 0.045 3.955 5 N -0.140 5.140 6 N -0.097 5.097 7 C -0.044 4.044 8 C -0.005 4.005 9 N -0.264 5.264 10 C -0.111 4.111 11 C 0.070 3.930 12 C -0.548 4.548 13 H 0.081 0.919 14 C -0.143 4.143 15 N -0.536 5.536 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 N -0.117 5.117 21 C 0.077 3.923 22 C -0.141 4.141 23 C -0.072 4.072 24 C -0.151 4.151 25 C -0.053 4.053 26 C -0.173 4.173 27 C 0.360 3.640 28 O -0.378 6.378 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.041 0.959 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.017 0.983 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.179 0.821 43 H 0.163 0.837 44 H 0.158 0.842 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.338 -9.973 -10.672 18.491 hybrid contribution 1.101 1.091 -0.259 1.571 sum -10.237 -8.882 -10.931 17.412 Atomic orbital electron populations 1.22107 0.94393 1.03152 1.02796 1.21820 0.95670 0.78515 1.05109 1.44558 1.62399 1.15482 1.01097 1.21356 1.01556 0.82437 0.90110 1.74655 1.23572 1.22090 0.93653 1.74237 1.15342 0.96366 1.23729 1.24957 1.02495 0.99985 0.76949 1.20684 0.92533 0.87214 1.00042 1.62255 1.02202 1.10115 1.51786 1.22239 1.01580 0.94105 0.93165 1.19796 0.96113 0.81930 0.95159 1.21036 0.91817 0.97297 1.44682 0.91869 1.24945 0.98653 0.95530 0.95159 1.69926 1.36108 1.01787 1.45763 0.86563 0.85055 0.77059 0.78776 1.20162 1.21295 1.20217 1.43537 1.49552 1.11681 1.06884 1.17822 0.98858 0.92839 0.82774 1.21422 0.99108 0.91760 1.01856 1.21453 0.94017 1.00649 0.91100 1.21318 1.00352 0.94714 0.98734 1.21014 0.93935 0.93702 0.96614 1.19467 1.10316 0.94478 0.93001 1.18096 0.77276 0.86142 0.82438 1.90835 1.51332 1.67152 1.28445 0.91810 0.92137 0.90418 0.88212 0.88298 0.90860 0.88786 0.95933 0.93461 0.90504 0.98322 0.95073 0.92715 0.82144 0.83656 0.84217 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.24 37.16 0.38 -1.18 16 2 C 0.11 1.18 6.04 -4.04 -0.02 1.16 16 3 N -0.51 -7.00 2.66 -117.87 -0.31 -7.32 16 4 C 0.40 6.31 8.28 -319.07 -2.64 3.67 16 5 N -0.29 -4.99 11.99 30.29 0.36 -4.63 16 6 N -0.26 -4.61 11.73 32.98 0.39 -4.23 16 7 C 0.22 3.74 6.59 -154.09 -1.02 2.72 16 8 C 0.13 2.07 4.45 -4.98 -0.02 2.05 16 9 N -0.54 -10.52 4.47 -245.82 -1.10 -11.62 16 10 C 0.04 0.72 9.19 60.07 0.55 1.27 16 11 C 0.19 4.50 4.72 -4.97 -0.02 4.48 16 12 C -0.51 -13.20 8.52 -34.44 -0.29 -13.49 16 13 H 0.06 1.65 7.10 -52.49 -0.37 1.28 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -24.80 13.29 55.43 0.74 -24.07 16 16 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 N -0.43 -6.85 3.01 -58.27 -0.18 -7.02 16 21 C 0.17 2.54 6.65 -83.67 -0.56 1.98 16 22 C -0.12 -1.66 9.46 -39.49 -0.37 -2.04 16 23 C -0.05 -0.58 10.02 -39.51 -0.40 -0.98 16 24 C -0.13 -1.25 10.03 -39.57 -0.40 -1.64 16 25 C -0.03 -0.36 9.64 -39.29 -0.38 -0.74 16 26 C -0.17 -2.26 5.88 -104.91 -0.62 -2.88 16 27 C 0.57 8.09 7.64 -12.45 -0.10 7.99 16 28 O -0.50 -7.53 16.10 5.24 0.08 -7.45 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.10 1.00 7.41 -51.93 -0.38 0.61 16 33 H 0.10 1.02 7.88 -51.93 -0.41 0.61 16 34 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 35 H 0.09 1.40 5.72 -51.93 -0.30 1.10 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.88 6.82 -51.93 -0.35 0.53 16 38 H 0.08 1.57 6.86 -51.93 -0.36 1.21 16 39 H 0.00 -0.03 8.12 -51.93 -0.42 -0.45 16 40 H 0.03 0.74 7.93 -51.93 -0.41 0.33 16 41 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.16 2.39 4.40 -52.49 -0.23 2.16 16 43 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.15 1.36 7.76 -52.48 -0.41 0.95 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -30.46 372.01 -11.17 -41.63 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.74 Total: -0.29 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -6.00 Total: 3.84 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.10 Total: -58.87 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.08 Total: -7.45 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.46 -11.17 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133297485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.350 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds