Wall clock time and date at job start Wed Apr 1 2020 00:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46814 * 2 1 4 4 C 1.38208 * 119.51257 * 90.00014 * 3 2 1 5 5 N 1.31483 * 131.76720 * 359.95629 * 4 3 2 6 6 N 1.28532 * 109.89414 * 179.75065 * 5 4 3 7 7 C 1.30436 * 110.10990 * 0.45142 * 6 5 4 8 8 C 1.50702 * 126.42659 * 179.82425 * 7 6 5 9 9 N 1.46898 * 109.47245 * 96.82705 * 8 7 6 10 10 C 1.46905 * 110.99828 * 293.95158 * 9 8 7 11 11 C 1.46900 * 111.00079 * 170.00349 * 9 8 7 12 12 C 1.50707 * 109.46924 * 190.00000 * 11 9 8 13 13 H 1.07994 * 120.00049 * 359.97438 * 12 11 9 14 14 C 1.37880 * 119.99608 * 179.97438 * 12 11 9 15 15 N 1.31507 * 120.00034 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99798 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47073 * 59.99750 * 16 14 12 18 18 H 1.48496 * 109.47225 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46822 * 299.99998 * 16 14 12 20 20 N 1.36464 * 121.45233 * 179.97438 * 4 3 2 21 21 C 1.38904 * 120.92911 * 359.96235 * 20 4 3 22 22 C 1.38664 * 121.31191 * 179.97438 * 21 20 4 23 23 C 1.38067 * 119.87974 * 180.02562 * 22 21 20 24 24 C 1.38612 * 120.59441 * 0.04707 * 23 22 21 25 25 C 1.37895 * 120.34433 * 359.97438 * 24 23 22 26 26 C 1.39358 * 119.60875 * 0.02562 * 25 24 23 27 27 C 1.34935 * 119.50721 * 269.97473 * 3 2 1 28 28 O 1.21638 * 120.57411 * 0.05427 * 27 3 2 29 29 H 1.09004 * 109.47247 * 299.99833 * 1 2 3 30 30 H 1.08992 * 109.47194 * 60.00202 * 1 2 3 31 31 H 1.09000 * 109.46984 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46961 * 239.99754 * 2 1 3 33 33 H 1.09005 * 109.46965 * 119.99753 * 2 1 3 34 34 H 1.08999 * 109.47352 * 336.82507 * 8 7 6 35 35 H 1.09001 * 109.47001 * 216.82285 * 8 7 6 36 36 H 1.08997 * 109.47272 * 296.04881 * 10 9 8 37 37 H 1.09000 * 109.47187 * 56.04813 * 10 9 8 38 38 H 1.09003 * 109.47355 * 176.04536 * 10 9 8 39 39 H 1.08994 * 109.47486 * 69.99522 * 11 9 8 40 40 H 1.09000 * 109.46683 * 309.99384 * 11 9 8 41 41 H 0.96999 * 119.99960 * 180.02562 * 15 14 12 42 42 H 1.08001 * 120.06593 * 0.06199 * 22 21 20 43 43 H 1.07996 * 119.70100 * 180.02562 * 23 22 21 44 44 H 1.08001 * 119.82891 * 179.97438 * 24 23 22 45 45 H 1.08007 * 120.19369 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2452 2.0232 1.2027 5 7 2.1039 1.6256 2.4480 6 7 2.4439 2.5706 3.2502 7 6 2.8107 3.6233 2.5730 8 6 3.2756 4.9378 3.1449 9 7 4.7440 4.9681 3.1721 10 6 5.2737 3.9712 4.1121 11 6 5.2370 6.3130 3.4980 12 6 6.7268 6.3689 3.2780 13 1 7.2547 5.4929 2.9312 14 6 7.4159 7.5385 3.5195 15 7 6.7729 8.6053 3.9412 16 14 9.2627 7.6077 3.2475 17 1 9.5656 7.2995 1.8267 18 1 9.7608 8.9676 3.5756 19 1 9.9296 6.6109 4.1233 20 7 2.7003 3.3089 1.2489 21 6 2.9528 4.0192 0.0823 22 6 3.4147 5.3261 0.1199 23 6 3.6555 6.0047 -1.0581 24 6 3.4387 5.3919 -2.2823 25 6 2.9791 4.0930 -2.3394 26 6 2.7323 3.3974 -1.1574 27 6 2.2403 2.0077 -1.1743 28 8 2.0376 1.4359 -2.2286 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 2.8911 5.0494 4.1586 35 1 2.9069 5.7547 2.5244 36 1 4.9586 4.2231 5.1247 37 1 4.8932 2.9845 3.8481 38 1 6.3626 3.9662 4.0612 39 1 5.0149 6.5385 4.5410 40 1 4.7472 7.0449 2.8557 41 1 7.2576 9.4283 4.1108 42 1 3.5865 5.8121 1.0690 43 1 4.0157 7.0223 -1.0254 44 1 3.6307 5.9344 -3.1962 45 1 2.8106 3.6180 -3.2947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133297485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:01 Heat of formation + Delta-G solvation = 90.136891 kcal Electronic energy + Delta-G solvation = -30248.579478 eV Core-core repulsion = 26267.868514 eV Total energy + Delta-G solvation = -3980.710964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.90463 -41.84756 -40.03556 -38.52518 -37.71896 -36.25773 -34.76497 -33.36264 -32.06264 -31.39984 -31.15614 -29.27722 -28.62260 -26.30941 -26.00795 -24.85584 -24.49991 -23.58043 -22.62035 -21.64722 -20.76496 -20.14716 -18.55452 -18.48278 -18.36695 -17.68413 -17.05386 -16.90626 -16.37151 -16.16634 -16.02842 -15.70506 -15.61208 -15.44719 -14.97744 -14.93448 -14.67295 -14.24902 -13.90055 -13.80384 -13.68270 -13.31083 -13.20198 -13.00154 -12.87347 -12.79138 -12.63976 -12.57774 -12.40108 -12.33369 -12.23345 -12.11326 -11.92318 -11.87247 -11.40129 -11.35443 -10.57866 -10.35935 -9.85146 -9.61904 -9.20480 -8.17759 -6.25786 -0.68666 -0.32204 0.50785 0.61990 1.16675 1.25330 1.45219 1.45781 1.53741 1.62802 2.42290 2.57958 2.69183 2.82041 3.09992 3.16519 3.29331 3.49921 3.57225 3.73236 3.95004 4.04042 4.07001 4.12584 4.19278 4.30121 4.32842 4.38232 4.45343 4.50865 4.66920 4.68887 4.72528 4.80124 4.94655 5.00135 5.03985 5.11458 5.13345 5.19275 5.24757 5.27348 5.31693 5.59156 5.64725 5.77131 5.99274 6.15610 6.33257 6.46528 6.87128 7.25229 7.43070 8.92442 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014012 B = 0.003604 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.874462 B = 7767.154461 C = 9007.497879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 N -0.506 5.506 4 C 0.401 3.599 5 N -0.309 5.309 6 N -0.277 5.277 7 C 0.216 3.784 8 C 0.131 3.869 9 N -0.538 5.538 10 C 0.046 3.954 11 C 0.211 3.789 12 C -0.521 4.521 13 H 0.057 0.943 14 C 0.013 3.987 15 N -0.927 5.927 16 Si 0.958 3.042 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.275 1.275 20 N -0.428 5.428 21 C 0.147 3.853 22 C -0.137 4.137 23 C -0.051 4.051 24 C -0.111 4.111 25 C -0.029 4.029 26 C -0.182 4.182 27 C 0.567 3.433 28 O -0.514 6.514 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.023 0.977 37 H 0.052 0.948 38 H 0.062 0.938 39 H -0.026 1.026 40 H 0.025 0.975 41 H 0.265 0.735 42 H 0.144 0.856 43 H 0.165 0.835 44 H 0.182 0.818 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.779 -8.755 -13.176 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.017 4.017 3 N -0.236 5.236 4 C 0.047 3.953 5 N -0.155 5.155 6 N -0.114 5.114 7 C -0.051 4.051 8 C 0.001 3.999 9 N -0.263 5.263 10 C -0.102 4.102 11 C 0.086 3.914 12 C -0.559 4.559 13 H 0.075 0.925 14 C -0.186 4.186 15 N -0.567 5.567 16 Si 0.783 3.217 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.200 1.200 20 N -0.118 5.118 21 C 0.052 3.948 22 C -0.157 4.157 23 C -0.070 4.070 24 C -0.129 4.129 25 C -0.048 4.048 26 C -0.187 4.187 27 C 0.359 3.641 28 O -0.389 6.389 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.127 0.873 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.081 0.919 39 H -0.008 1.008 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.161 0.839 43 H 0.183 0.817 44 H 0.199 0.801 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.042 -9.987 -12.953 19.735 hybrid contribution 0.959 1.076 0.342 1.481 sum -10.083 -8.911 -12.611 18.442 Atomic orbital electron populations 1.22052 0.93209 1.04604 1.01701 1.22084 0.96652 0.77248 1.05750 1.44800 1.62106 1.16289 1.00376 1.21490 1.00833 0.82497 0.90434 1.74577 1.24576 1.22210 0.94168 1.74168 1.15942 0.96819 1.24513 1.24767 1.03072 0.99716 0.77518 1.20657 0.90438 0.88007 1.00760 1.62101 1.04319 1.08314 1.51602 1.22126 1.00635 0.94265 0.93217 1.19454 0.95048 0.83568 0.93377 1.21307 0.93227 0.97092 1.44305 0.92453 1.25677 1.02713 0.95234 0.94939 1.70026 1.37671 1.02270 1.46728 0.85612 0.80145 0.77022 0.78888 1.19389 1.20952 1.20037 1.43595 1.49220 1.11885 1.07075 1.18044 1.00784 0.93427 0.82584 1.21408 1.00235 0.91697 1.02330 1.21771 0.93066 1.01389 0.90762 1.21752 0.97644 0.93964 0.99579 1.21367 0.92917 0.94174 0.96359 1.19670 1.11089 0.94396 0.93517 1.18271 0.77041 0.86490 0.82302 1.90821 1.51987 1.67515 1.28537 0.93163 0.92800 0.87709 0.87181 0.87981 0.90366 0.87286 0.95840 0.92895 0.91903 1.00792 0.95667 0.92638 0.83883 0.81725 0.80096 0.81671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 10.24 71.98 0.74 -2.07 16 2 C 0.10 2.13 6.04 86.38 0.52 2.65 16 3 N -0.51 -13.82 2.66 -644.97 -1.71 -15.53 16 4 C 0.40 12.76 8.28 260.18 2.16 14.92 16 5 N -0.31 -10.63 11.99 -58.09 -0.70 -11.32 16 6 N -0.28 -9.99 11.73 -49.58 -0.58 -10.57 16 7 C 0.22 7.36 6.59 137.66 0.91 8.27 16 8 C 0.13 4.40 4.45 85.56 0.38 4.78 16 9 N -0.54 -21.37 4.47 -931.63 -4.16 -25.53 16 10 C 0.05 1.80 9.19 127.69 1.17 2.98 16 11 C 0.21 9.95 4.72 85.56 0.40 10.35 16 12 C -0.52 -27.14 8.52 25.60 0.22 -26.92 16 13 H 0.06 3.01 7.10 -2.91 -0.02 2.98 16 14 C 0.01 0.71 5.46 84.66 0.46 1.17 16 15 N -0.93 -51.47 13.29 21.45 0.28 -51.18 16 16 Si 0.96 41.83 29.54 68.60 2.03 43.86 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 N -0.43 -13.84 3.01 -338.28 -1.02 -14.86 16 21 C 0.15 4.24 6.65 38.66 0.26 4.50 16 22 C -0.14 -3.65 9.46 22.33 0.21 -3.43 16 23 C -0.05 -1.00 10.02 22.32 0.22 -0.77 16 24 C -0.11 -1.68 10.03 22.28 0.22 -1.45 16 25 C -0.03 -0.55 9.64 22.46 0.22 -0.33 16 26 C -0.18 -4.69 5.88 -20.05 -0.12 -4.80 16 27 C 0.57 15.60 7.64 86.64 0.66 16.26 16 28 O -0.51 -14.65 16.10 -4.15 -0.07 -14.71 16 29 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.11 2.07 7.41 -2.39 -0.02 2.05 16 33 H 0.10 2.05 7.88 -2.38 -0.02 2.04 16 34 H 0.08 2.54 8.12 -2.39 -0.02 2.52 16 35 H 0.11 3.30 5.72 -2.39 -0.01 3.29 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 37 H 0.05 2.00 6.82 -2.39 -0.02 1.98 16 38 H 0.06 2.61 6.86 -2.39 -0.02 2.59 16 39 H -0.03 -1.33 8.12 -2.39 -0.02 -1.35 16 40 H 0.03 1.22 7.93 -2.39 -0.02 1.20 16 41 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 42 H 0.14 4.29 4.40 -2.91 -0.01 4.27 16 43 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 44 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 45 H 0.17 2.49 7.76 -2.91 -0.02 2.47 16 Total: -1.00 -65.56 372.01 3.74 -61.83 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.03 Total: 11.92 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 8.64 Total: 26.10 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -7.89 Total: -129.00 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.07 Total: -14.71 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -65.56 3.74 -61.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133297485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.963 kcal (2) G-P(sol) polarization free energy of solvation -65.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds