Wall clock time and date at job start Wed Apr 1 2020 01:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81401 * 109.47085 * 2 1 4 4 O 1.42096 * 110.54409 * 68.37355 * 3 2 1 5 5 O 1.42104 * 110.54040 * 291.62369 * 3 2 1 6 6 N 1.65601 * 104.45005 * 180.02562 * 3 2 1 7 7 C 1.46497 * 120.00017 * 64.99732 * 6 3 2 8 8 C 1.52996 * 109.47125 * 165.00286 * 7 6 3 9 9 C 1.53001 * 109.47179 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47266 * 179.27887 * 9 8 7 11 11 C 1.46906 * 110.99857 * 287.83819 * 10 9 8 12 12 C 1.50703 * 109.47090 * 298.73234 * 11 10 9 13 13 H 1.08006 * 119.99557 * 4.70358 * 12 11 10 14 14 C 1.37873 * 119.99861 * 184.69591 * 12 11 10 15 15 N 1.31517 * 119.99721 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00114 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47088 * 89.99885 * 16 14 12 18 18 H 1.48504 * 109.46883 * 209.99632 * 16 14 12 19 19 H 1.48496 * 109.46934 * 329.99601 * 16 14 12 20 20 C 1.46897 * 111.00084 * 163.88133 * 10 9 8 21 21 C 1.50704 * 109.47057 * 189.99911 * 20 10 9 22 22 C 1.38229 * 119.61555 * 95.02693 * 21 20 10 23 23 C 1.38621 * 119.15988 * 179.97438 * 22 21 20 24 24 C 1.38668 * 118.42245 * 359.97438 * 23 22 21 25 25 C 1.38184 * 119.16504 * 0.02562 * 24 23 22 26 26 N 1.31852 * 119.62106 * 275.00140 * 21 20 10 27 27 H 1.08995 * 109.47406 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46998 * 300.00201 * 1 2 3 29 29 H 1.09005 * 109.47209 * 60.00227 * 1 2 3 30 30 H 1.08997 * 109.47159 * 239.99777 * 2 1 3 31 31 H 1.08995 * 109.46703 * 119.99585 * 2 1 3 32 32 H 0.97003 * 119.99763 * 244.99962 * 6 3 2 33 33 H 1.08999 * 109.47351 * 44.99941 * 7 6 3 34 34 H 1.09009 * 109.47345 * 285.00047 * 7 6 3 35 35 H 1.09007 * 109.47200 * 59.99932 * 8 7 6 36 36 H 1.08997 * 109.47049 * 299.99824 * 8 7 6 37 37 H 1.09003 * 109.46530 * 59.28101 * 9 8 7 38 38 H 1.08998 * 109.47325 * 299.28092 * 9 8 7 39 39 H 1.08994 * 109.46962 * 58.73663 * 11 10 9 40 40 H 1.08998 * 109.46584 * 178.73744 * 11 10 9 41 41 H 0.96997 * 119.99711 * 180.02562 * 15 14 12 42 42 H 1.08997 * 109.47087 * 70.00418 * 20 10 9 43 43 H 1.08996 * 109.47314 * 310.00064 * 20 10 9 44 44 H 1.08006 * 120.41764 * 359.94728 * 22 21 20 45 45 H 1.08001 * 120.79188 * 180.02562 * 23 22 21 46 46 H 1.08001 * 120.42156 * 179.97438 * 24 23 22 47 47 H 1.08002 * 119.61994 * 180.27031 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8385 2.3438 -1.2370 6 7 3.7843 1.5653 -0.0007 7 6 4.4666 0.9672 -1.1509 8 6 5.9617 1.2837 -1.0781 9 6 6.6744 0.6585 -2.2790 10 7 8.1072 0.9768 -2.2184 11 6 8.3458 2.3919 -2.5325 12 6 7.8712 2.6826 -3.9330 13 1 7.3674 1.9156 -4.5025 14 6 8.0802 3.9277 -4.4872 15 7 7.6656 4.1814 -5.7092 16 14 8.9521 5.2540 -3.5023 17 1 10.4142 5.1730 -3.7487 18 1 8.4531 6.5890 -3.9195 19 1 8.6821 5.0545 -2.0558 20 6 8.8791 0.1020 -3.1110 21 6 10.3510 0.2852 -2.8444 22 6 11.0005 -0.5744 -1.9784 23 6 12.3546 -0.3975 -1.7404 24 6 13.0080 0.6416 -2.3856 25 6 12.2926 1.4608 -3.2379 26 7 11.0044 1.2632 -3.4402 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 4.2988 1.8765 0.7605 33 1 4.0528 1.3771 -2.0723 34 1 4.3228 -0.1133 -1.1372 35 1 6.3755 0.8737 -0.1567 36 1 6.1055 2.3640 -1.0919 37 1 6.2519 1.0586 -3.2008 38 1 6.5413 -0.4232 -2.2579 39 1 7.7998 3.0178 -1.8266 40 1 9.4120 2.6057 -2.4584 41 1 7.8130 5.0573 -6.0992 42 1 8.6630 0.3592 -4.1479 43 1 8.6035 -0.9367 -2.9293 44 1 10.4597 -1.3734 -1.4930 45 1 12.8884 -1.0539 -1.0690 46 1 14.0626 0.8090 -2.2234 47 1 12.7950 2.2696 -3.7477 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133451204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:03 Heat of formation + Delta-G solvation = -30.504860 kcal Electronic energy + Delta-G solvation = -27621.523555 eV Core-core repulsion = 23738.732372 eV Total energy + Delta-G solvation = -3882.791183 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.84003 -37.44097 -37.11195 -36.01236 -35.54747 -33.42368 -32.37311 -32.20181 -31.74207 -30.12117 -27.70508 -25.79707 -24.33080 -23.73845 -23.08731 -22.41623 -21.12829 -19.67216 -19.14967 -17.71461 -16.95744 -16.66528 -16.39378 -16.33089 -15.82190 -15.43726 -15.24880 -15.01610 -14.75106 -14.29378 -14.14518 -13.88340 -13.50998 -13.23086 -13.06772 -12.85418 -12.77797 -12.44762 -12.36242 -12.18366 -12.10657 -12.02426 -11.86202 -11.75147 -11.40510 -11.28383 -11.04118 -10.85200 -10.77586 -10.61936 -10.39662 -10.22048 -9.81642 -9.52982 -9.43156 -9.40635 -8.82979 -8.66101 -8.43634 -7.25566 -5.97909 -3.94553 0.15509 1.46253 1.64818 2.66314 3.38091 3.43837 3.47071 3.67471 4.03744 4.13334 4.33111 4.52322 4.57632 4.70824 4.86308 4.91643 5.03701 5.11863 5.18473 5.23747 5.27117 5.35172 5.38160 5.38853 5.46956 5.55441 5.59410 5.65771 5.85638 5.91383 6.00510 6.04737 6.10390 6.23557 6.36892 6.45330 6.61887 6.66847 6.77224 6.94043 6.98115 7.06436 7.24137 7.63693 8.00358 8.03982 8.52919 8.55712 9.01580 9.67007 11.15513 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012112 B = 0.002882 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.177271 B = 9714.671798 C =11206.850125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.634 4.634 3 S 2.612 3.388 4 O -0.964 6.964 5 O -0.950 6.950 6 N -1.117 6.117 7 C 0.114 3.886 8 C -0.116 4.116 9 C 0.058 3.942 10 N -0.530 5.530 11 C 0.151 3.849 12 C -0.532 4.532 13 H 0.073 0.927 14 C 0.079 3.921 15 N -0.901 5.901 16 Si 0.875 3.125 17 H -0.276 1.276 18 H -0.291 1.291 19 H -0.269 1.269 20 C 0.102 3.898 21 C 0.156 3.844 22 C -0.164 4.164 23 C -0.085 4.085 24 C -0.188 4.188 25 C 0.096 3.904 26 N -0.449 5.449 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.417 0.583 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.024 0.976 40 H 0.036 0.964 41 H 0.261 0.739 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.082 -13.536 12.197 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.763 4.763 3 S 2.703 3.297 4 O -0.954 6.954 5 O -0.940 6.940 6 N -0.877 5.877 7 C -0.012 4.012 8 C -0.155 4.155 9 C -0.071 4.071 10 N -0.253 5.253 11 C 0.024 3.976 12 C -0.571 4.571 13 H 0.091 0.909 14 C -0.123 4.123 15 N -0.540 5.540 16 Si 0.703 3.297 17 H -0.202 1.202 18 H -0.217 1.217 19 H -0.194 1.194 20 C -0.026 4.026 21 C 0.018 3.982 22 C -0.185 4.185 23 C -0.111 4.111 24 C -0.209 4.209 25 C -0.062 4.062 26 N -0.157 5.157 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.252 0.748 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.147 0.853 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.991 -12.198 11.801 17.435 hybrid contribution 1.277 -0.179 0.484 1.377 sum -2.714 -12.377 12.285 17.649 Atomic orbital electron populations 1.21496 0.90651 1.04909 1.03485 1.30520 1.07144 1.27060 1.11606 1.04969 0.73320 0.77092 0.74330 1.93591 1.83428 1.73007 1.45367 1.93637 1.83375 1.71639 1.45350 1.55512 1.25639 1.78162 1.28399 1.21367 0.95148 0.96652 0.88039 1.21651 0.91384 1.03057 0.99423 1.21898 0.89160 0.98161 0.97913 1.62478 1.06043 1.06345 1.50467 1.20277 0.97319 0.84112 0.95881 1.21428 1.38162 0.98908 0.98594 0.90929 1.24812 0.94766 0.98262 0.94458 1.69914 1.47221 1.22471 1.14384 0.86863 0.80514 0.81326 0.80977 1.20180 1.21723 1.19389 1.20872 0.87155 0.96057 0.98528 1.21275 0.96438 0.89496 0.91033 1.21927 0.95015 1.01639 0.99897 1.21449 0.94581 0.97037 0.98036 1.22050 1.01053 0.97645 1.00111 1.22829 0.90330 0.97794 0.95221 1.67781 1.08321 1.17537 1.22098 0.90168 0.91063 0.90846 0.84966 0.85084 0.74819 0.89810 0.92224 0.91441 0.90375 0.92046 0.92630 0.95833 0.94595 0.92932 0.91032 0.91249 0.85295 0.85607 0.85610 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.92 37.16 0.37 -0.64 16 2 C -0.63 -4.50 6.79 37.16 0.25 -4.25 16 3 S 2.61 29.17 5.46 -107.50 -0.59 28.59 16 4 O -0.96 -13.41 18.08 -57.54 -1.04 -14.45 16 5 O -0.95 -14.72 17.49 -57.54 -1.01 -15.73 16 6 N -1.12 -12.06 5.89 -10.61 -0.06 -12.13 16 7 C 0.11 1.35 6.13 -4.04 -0.02 1.32 16 8 C -0.12 -1.67 5.42 -26.73 -0.14 -1.81 16 9 C 0.06 0.96 4.81 -3.82 -0.02 0.94 16 10 N -0.53 -10.15 4.66 -237.51 -1.11 -11.25 16 11 C 0.15 3.53 3.77 -4.97 -0.02 3.52 16 12 C -0.53 -14.45 7.89 -34.44 -0.27 -14.72 16 13 H 0.07 2.12 6.20 -52.48 -0.33 1.79 16 14 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 15 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 16 Si 0.88 22.29 27.38 -169.99 -4.65 17.64 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 19 H -0.27 -6.65 6.68 56.52 0.38 -6.27 16 20 C 0.10 1.86 5.09 -4.98 -0.03 1.83 16 21 C 0.16 2.80 5.70 -82.58 -0.47 2.33 16 22 C -0.16 -2.36 9.72 -39.44 -0.38 -2.74 16 23 C -0.08 -1.07 10.18 -39.28 -0.40 -1.47 16 24 C -0.19 -2.49 10.11 -39.44 -0.40 -2.89 16 25 C 0.10 1.58 11.18 -17.55 -0.20 1.38 16 26 N -0.45 -8.98 8.78 -9.47 -0.08 -9.06 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.13 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.42 4.05 8.62 -34.47 -0.30 3.75 16 33 H 0.08 1.12 7.69 -51.93 -0.40 0.72 16 34 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 36 H 0.08 1.34 6.72 -51.93 -0.35 0.99 16 37 H 0.06 1.20 6.17 -51.93 -0.32 0.88 16 38 H 0.06 0.75 7.81 -51.93 -0.41 0.35 16 39 H 0.02 0.57 6.04 -51.93 -0.31 0.26 16 40 H 0.04 0.90 5.36 -51.93 -0.28 0.62 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.07 1.53 6.57 -51.93 -0.34 1.19 16 43 H 0.07 1.02 7.76 -51.93 -0.40 0.61 16 44 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 45 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 46 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 47 H 0.15 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 391.23 15.07 5.90 5.90 Total: -1.00 -37.18 391.23 -10.94 -48.12 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.24 Total: 4.29 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.83 Total: -15.01 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.48 Total: -59.34 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -2.05 Total: -30.18 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.65 Total: 17.64 kcal Atomic # 16 Polarization: 29.17 SS G_CDS: -0.59 Total: 28.59 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.18 -10.94 -48.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133451204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.612 kcal (2) G-P(sol) polarization free energy of solvation -37.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds