Wall clock time and date at job start Wed Apr 1 2020 01:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81401 * 109.47085 * 2 1 4 4 O 1.42096 * 110.54409 * 68.37355 * 3 2 1 5 5 O 1.42104 * 110.54040 * 291.62369 * 3 2 1 6 6 N 1.65601 * 104.45005 * 180.02562 * 3 2 1 7 7 C 1.46497 * 120.00017 * 64.99732 * 6 3 2 8 8 C 1.52996 * 109.47125 * 165.00286 * 7 6 3 9 9 C 1.53001 * 109.47179 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47266 * 179.27887 * 9 8 7 11 11 C 1.46906 * 110.99857 * 287.83819 * 10 9 8 12 12 C 1.50703 * 109.47090 * 298.73234 * 11 10 9 13 13 H 1.08006 * 119.99557 * 4.70358 * 12 11 10 14 14 C 1.37873 * 119.99861 * 184.69591 * 12 11 10 15 15 N 1.31517 * 119.99721 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00114 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47088 * 89.99885 * 16 14 12 18 18 H 1.48504 * 109.46883 * 209.99632 * 16 14 12 19 19 H 1.48496 * 109.46934 * 329.99601 * 16 14 12 20 20 C 1.46897 * 111.00084 * 163.88133 * 10 9 8 21 21 C 1.50704 * 109.47057 * 189.99911 * 20 10 9 22 22 C 1.38229 * 119.61555 * 95.02693 * 21 20 10 23 23 C 1.38621 * 119.15988 * 179.97438 * 22 21 20 24 24 C 1.38668 * 118.42245 * 359.97438 * 23 22 21 25 25 C 1.38184 * 119.16504 * 0.02562 * 24 23 22 26 26 N 1.31852 * 119.62106 * 275.00140 * 21 20 10 27 27 H 1.08995 * 109.47406 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46998 * 300.00201 * 1 2 3 29 29 H 1.09005 * 109.47209 * 60.00227 * 1 2 3 30 30 H 1.08997 * 109.47159 * 239.99777 * 2 1 3 31 31 H 1.08995 * 109.46703 * 119.99585 * 2 1 3 32 32 H 0.97003 * 119.99763 * 244.99962 * 6 3 2 33 33 H 1.08999 * 109.47351 * 44.99941 * 7 6 3 34 34 H 1.09009 * 109.47345 * 285.00047 * 7 6 3 35 35 H 1.09007 * 109.47200 * 59.99932 * 8 7 6 36 36 H 1.08997 * 109.47049 * 299.99824 * 8 7 6 37 37 H 1.09003 * 109.46530 * 59.28101 * 9 8 7 38 38 H 1.08998 * 109.47325 * 299.28092 * 9 8 7 39 39 H 1.08994 * 109.46962 * 58.73663 * 11 10 9 40 40 H 1.08998 * 109.46584 * 178.73744 * 11 10 9 41 41 H 0.96997 * 119.99711 * 180.02562 * 15 14 12 42 42 H 1.08997 * 109.47087 * 70.00418 * 20 10 9 43 43 H 1.08996 * 109.47314 * 310.00064 * 20 10 9 44 44 H 1.08006 * 120.41764 * 359.94728 * 22 21 20 45 45 H 1.08001 * 120.79188 * 180.02562 * 23 22 21 46 46 H 1.08001 * 120.42156 * 179.97438 * 24 23 22 47 47 H 1.08002 * 119.61994 * 180.27031 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8385 2.3439 1.2369 5 8 1.8385 2.3438 -1.2370 6 7 3.7843 1.5653 -0.0007 7 6 4.4666 0.9672 -1.1509 8 6 5.9617 1.2837 -1.0781 9 6 6.6744 0.6585 -2.2790 10 7 8.1072 0.9768 -2.2184 11 6 8.3458 2.3919 -2.5325 12 6 7.8712 2.6826 -3.9330 13 1 7.3674 1.9156 -4.5025 14 6 8.0802 3.9277 -4.4872 15 7 7.6656 4.1814 -5.7092 16 14 8.9521 5.2540 -3.5023 17 1 10.4142 5.1730 -3.7487 18 1 8.4531 6.5890 -3.9195 19 1 8.6821 5.0545 -2.0558 20 6 8.8791 0.1020 -3.1110 21 6 10.3510 0.2852 -2.8444 22 6 11.0005 -0.5744 -1.9784 23 6 12.3546 -0.3975 -1.7404 24 6 13.0080 0.6416 -2.3856 25 6 12.2926 1.4608 -3.2379 26 7 11.0044 1.2632 -3.4402 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 4.2988 1.8765 0.7605 33 1 4.0528 1.3771 -2.0723 34 1 4.3228 -0.1133 -1.1372 35 1 6.3755 0.8737 -0.1567 36 1 6.1055 2.3640 -1.0919 37 1 6.2519 1.0586 -3.2008 38 1 6.5413 -0.4232 -2.2579 39 1 7.7998 3.0178 -1.8266 40 1 9.4120 2.6057 -2.4584 41 1 7.8130 5.0573 -6.0992 42 1 8.6630 0.3592 -4.1479 43 1 8.6035 -0.9367 -2.9293 44 1 10.4597 -1.3734 -1.4930 45 1 12.8884 -1.0539 -1.0690 46 1 14.0626 0.8090 -2.2234 47 1 12.7950 2.2696 -3.7477 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133451204.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:02 Heat of formation + Delta-G solvation = -61.272221 kcal Electronic energy + Delta-G solvation = -27622.857728 eV Core-core repulsion = 23738.732372 eV Total energy + Delta-G solvation = -3884.125356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.04064 -38.82932 -38.15760 -37.02787 -36.63496 -34.50278 -33.99621 -33.34439 -32.93042 -31.44747 -29.50850 -27.06125 -25.36689 -24.92053 -24.22082 -23.78292 -22.28769 -21.20858 -20.17506 -19.05555 -18.56126 -17.61097 -17.54265 -17.24103 -17.03195 -16.69770 -16.52430 -16.18159 -16.07574 -15.75699 -15.37657 -15.04992 -14.50700 -14.46870 -14.27804 -14.10427 -13.93640 -13.53834 -13.52102 -13.34830 -13.22155 -13.13569 -13.08926 -12.99392 -12.82748 -12.47661 -12.36059 -12.30876 -12.23508 -11.98086 -11.89065 -11.64460 -11.54298 -11.37694 -10.72515 -10.60990 -10.30121 -10.04656 -9.82185 -8.93567 -8.24307 -6.22197 -0.68684 0.32233 0.57056 1.30601 1.31820 1.40560 1.79447 2.36175 2.85104 2.92321 3.14450 3.27411 3.44723 3.70438 3.73914 3.95715 3.97305 4.07203 4.13014 4.16904 4.32180 4.38504 4.41260 4.41851 4.58020 4.66189 4.72787 4.78382 4.81200 4.87766 4.91201 4.95788 5.02068 5.09446 5.13041 5.18066 5.21839 5.34061 5.38305 5.42123 5.49661 5.62910 5.96902 6.11751 6.13510 6.37313 6.47468 6.79936 7.36829 7.42051 8.92540 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012112 B = 0.002882 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.177271 B = 9714.671798 C =11206.850125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.602 4.602 3 S 2.608 3.392 4 O -0.998 6.998 5 O -1.007 7.007 6 N -1.117 6.117 7 C 0.117 3.883 8 C -0.109 4.109 9 C 0.055 3.945 10 N -0.519 5.519 11 C 0.165 3.835 12 C -0.513 4.513 13 H 0.039 0.961 14 C 0.018 3.982 15 N -0.950 5.950 16 Si 0.932 3.068 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.256 1.256 20 C 0.105 3.895 21 C 0.121 3.879 22 C -0.156 4.156 23 C -0.078 4.078 24 C -0.173 4.173 25 C 0.066 3.934 26 N -0.509 5.509 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.155 0.845 31 H 0.163 0.837 32 H 0.422 0.578 33 H 0.057 0.943 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.040 0.960 37 H 0.020 0.980 38 H 0.098 0.902 39 H 0.017 0.983 40 H 0.027 0.973 41 H 0.260 0.740 42 H 0.023 0.977 43 H 0.110 0.890 44 H 0.160 0.840 45 H 0.171 0.829 46 H 0.162 0.838 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 -17.052 15.570 23.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.735 4.735 3 S 2.705 3.295 4 O -0.988 6.988 5 O -0.997 6.997 6 N -0.877 5.877 7 C -0.010 4.010 8 C -0.149 4.149 9 C -0.073 4.073 10 N -0.242 5.242 11 C 0.037 3.963 12 C -0.552 4.552 13 H 0.057 0.943 14 C -0.179 4.179 15 N -0.592 5.592 16 Si 0.758 3.242 17 H -0.197 1.197 18 H -0.216 1.216 19 H -0.180 1.180 20 C -0.023 4.023 21 C -0.016 4.016 22 C -0.176 4.176 23 C -0.103 4.103 24 C -0.193 4.193 25 C -0.091 4.091 26 N -0.218 5.218 27 H 0.125 0.875 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.173 0.827 31 H 0.181 0.819 32 H 0.257 0.743 33 H 0.075 0.925 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.059 0.941 37 H 0.038 0.962 38 H 0.116 0.884 39 H 0.035 0.965 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.042 0.958 43 H 0.128 0.872 44 H 0.177 0.823 45 H 0.188 0.812 46 H 0.180 0.820 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.759 -15.676 15.198 22.008 hybrid contribution 0.898 0.719 -0.570 1.284 sum -1.861 -14.957 14.628 21.004 Atomic orbital electron populations 1.21702 0.90303 1.06558 1.03490 1.30246 1.07247 1.21665 1.14387 1.04855 0.73095 0.79073 0.72509 1.93539 1.83766 1.75416 1.46118 1.93569 1.84042 1.74782 1.47269 1.55315 1.25517 1.78646 1.28179 1.21344 0.93025 0.99250 0.87366 1.21570 0.93264 1.00596 0.99448 1.22030 0.87522 1.00733 0.97059 1.62486 1.07671 1.03932 1.50108 1.19963 0.96190 0.87167 0.92957 1.21679 1.35945 0.97566 0.99992 0.94269 1.25613 0.96068 1.00810 0.95408 1.70058 1.49753 1.23051 1.16324 0.85937 0.79454 0.78614 0.80208 1.19706 1.21556 1.18017 1.20927 0.88220 0.97662 0.95499 1.21305 0.96126 0.90947 0.93266 1.22199 0.95999 1.01033 0.98350 1.21977 0.93961 0.96819 0.97572 1.22409 1.02536 0.96381 0.97969 1.23051 0.89808 0.99247 0.96970 1.67599 1.10422 1.19588 1.24240 0.87514 0.90866 0.91438 0.82697 0.81864 0.74257 0.92462 0.87466 0.88867 0.94134 0.96158 0.88360 0.96489 0.95470 0.93106 0.95837 0.87185 0.82259 0.81153 0.82006 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.92 71.98 0.71 -1.05 16 2 C -0.60 -6.42 6.79 71.98 0.49 -5.93 16 3 S 2.61 57.09 5.46 -56.49 -0.31 56.78 16 4 O -1.00 -27.82 18.08 -127.65 -2.31 -30.13 16 5 O -1.01 -32.53 17.49 -127.65 -2.23 -34.77 16 6 N -1.12 -23.00 5.89 -187.49 -1.10 -24.11 16 7 C 0.12 2.59 6.13 86.38 0.53 3.12 16 8 C -0.11 -3.06 5.42 30.59 0.17 -2.89 16 9 C 0.06 1.81 4.81 86.30 0.41 2.22 16 10 N -0.52 -19.79 4.66 -905.36 -4.22 -24.01 16 11 C 0.16 7.97 3.77 85.56 0.32 8.29 16 12 C -0.51 -29.46 7.89 25.60 0.20 -29.26 16 13 H 0.04 2.47 6.20 -2.91 -0.02 2.45 16 14 C 0.02 1.09 5.47 84.65 0.46 1.55 16 15 N -0.95 -61.66 13.96 21.45 0.30 -61.36 16 16 Si 0.93 47.71 27.38 68.60 1.88 49.59 16 17 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 18 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 19 H -0.26 -12.42 6.68 99.48 0.66 -11.76 16 20 C 0.11 3.82 5.09 85.56 0.44 4.25 16 21 C 0.12 4.26 5.70 42.55 0.24 4.51 16 22 C -0.16 -3.92 9.72 22.36 0.22 -3.71 16 23 C -0.08 -1.60 10.18 22.46 0.23 -1.37 16 24 C -0.17 -4.02 10.11 22.36 0.23 -3.79 16 25 C 0.07 2.15 11.18 84.67 0.95 3.10 16 26 N -0.51 -20.73 8.78 -183.88 -1.61 -22.35 16 27 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.42 7.80 8.62 -96.74 -0.83 6.96 16 33 H 0.06 1.58 7.69 -2.39 -0.02 1.56 16 34 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.04 1.43 6.72 -2.39 -0.02 1.41 16 37 H 0.02 0.83 6.17 -2.39 -0.01 0.82 16 38 H 0.10 2.37 7.81 -2.39 -0.02 2.36 16 39 H 0.02 0.85 6.04 -2.39 -0.01 0.83 16 40 H 0.03 1.39 5.36 -2.39 -0.01 1.37 16 41 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 42 H 0.02 1.07 6.57 -2.39 -0.02 1.05 16 43 H 0.11 2.98 7.76 -2.39 -0.02 2.96 16 44 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 45 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 46 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 47 H 0.15 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -89.45 391.23 -3.91 -93.36 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 0.10 Total: 17.96 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 5.60 Total: -20.97 kcal Atomic # 7 Polarization: -125.19 SS G_CDS: -6.63 Total: -131.82 kcal Atomic # 8 Polarization: -60.35 SS G_CDS: -4.54 Total: -64.90 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.88 Total: 49.59 kcal Atomic # 16 Polarization: 57.09 SS G_CDS: -0.31 Total: 56.78 kcal Total: -89.45 -3.91 -93.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133451204.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.090 kcal (2) G-P(sol) polarization free energy of solvation -89.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds