Wall clock time and date at job start Wed Apr 1 2020 01:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47842 * 111.00045 * 2 1 4 4 C 1.54914 * 104.79556 * 146.36323 * 3 2 1 5 5 C 1.55390 * 101.74125 * 323.02085 * 4 3 2 6 6 C 1.47450 * 111.00155 * 120.84382 * 2 1 3 7 7 H 1.09004 * 109.88557 * 117.17365 * 6 2 1 8 8 C 1.50696 * 109.88499 * 356.15080 * 6 2 1 9 9 O 1.21288 * 120.00099 * 305.93521 * 8 6 2 10 10 N 1.34779 * 120.00463 * 125.93854 * 8 6 2 11 11 C 1.46961 * 120.59718 * 175.03829 * 10 8 6 12 12 C 1.53373 * 108.63454 * 235.20370 * 11 10 8 13 13 N 1.46961 * 108.63570 * 310.57955 * 12 11 10 14 14 C 1.34783 * 120.59207 * 235.19923 * 13 12 11 15 15 O 1.21284 * 119.99856 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99872 * 180.02562 * 14 13 12 17 17 S 1.81004 * 109.47136 * 180.02562 * 16 14 13 18 18 C 1.76190 * 100.00102 * 179.97438 * 17 16 14 19 19 H 1.08011 * 120.00089 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00359 * 179.97438 * 18 17 16 21 21 N 1.31638 * 119.99517 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00515 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47265 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47347 * 119.99464 * 22 20 18 25 25 H 1.48500 * 109.47538 * 240.00094 * 22 20 18 26 26 C 1.46960 * 118.81376 * 55.47785 * 13 12 11 27 27 C 1.46971 * 120.58765 * 355.02280 * 10 8 6 28 28 H 1.08995 * 109.47129 * 308.67033 * 1 2 3 29 29 H 1.09002 * 109.47004 * 68.67132 * 1 2 3 30 30 H 1.09004 * 109.46954 * 188.67166 * 1 2 3 31 31 H 1.09001 * 110.37809 * 265.19386 * 3 2 1 32 32 H 1.09004 * 110.37521 * 27.53624 * 3 2 1 33 33 H 1.09000 * 110.98971 * 81.02350 * 4 3 2 34 34 H 1.09000 * 110.98786 * 204.83730 * 4 3 2 35 35 H 1.09009 * 110.68141 * 277.17524 * 5 4 3 36 36 H 1.09005 * 110.84479 * 153.86612 * 5 4 3 37 37 H 1.08999 * 109.60573 * 115.46214 * 11 10 8 38 38 H 1.08995 * 109.60938 * 354.95003 * 11 10 8 39 39 H 1.09003 * 109.61015 * 190.82998 * 12 11 10 40 40 H 1.09005 * 109.74714 * 70.40688 * 12 11 10 41 41 H 1.08998 * 109.47247 * 60.00015 * 16 14 13 42 42 H 1.09000 * 109.47070 * 300.00204 * 16 14 13 43 43 H 0.97003 * 119.99616 * 179.97438 * 21 20 18 44 44 H 1.09007 * 109.60569 * 64.26581 * 26 13 12 45 45 H 1.08998 * 109.61326 * 184.77434 * 26 13 12 46 46 H 1.09003 * 109.60584 * 244.54041 * 27 10 8 47 47 H 1.09004 * 109.61052 * 4.87562 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3048 1.3027 0.8297 5 6 2.9182 0.2789 1.9328 6 6 1.9974 -0.7058 1.1819 7 1 2.5673 -1.5801 0.8675 8 6 0.8611 -1.1292 2.0765 9 8 0.0541 -0.3095 2.4610 10 7 0.7416 -2.4188 2.4496 11 6 -0.2956 -2.8275 3.4072 12 6 0.3770 -3.5586 4.5758 13 7 1.2813 -4.5813 4.0318 14 6 1.1619 -5.8710 4.4048 15 8 0.3021 -6.1963 5.1959 16 6 2.0969 -6.9086 3.8391 17 16 1.6849 -8.5313 4.5273 18 6 2.8962 -9.5230 3.7188 19 1 3.5968 -9.0684 3.0338 20 6 2.9502 -10.8884 3.9621 21 7 2.0966 -11.4423 4.7973 22 14 4.2338 -11.9400 3.1045 23 1 5.0664 -11.0834 2.2221 24 1 5.0983 -12.5926 4.1203 25 1 3.5572 -12.9800 2.2885 26 6 2.3221 -4.1718 3.0785 27 6 1.6461 -3.4416 1.9056 28 1 -0.3633 0.6421 0.8023 29 1 -0.3633 0.3738 -0.9573 30 1 -0.3633 -1.0160 0.1549 31 1 2.2148 1.7039 -1.0182 32 1 1.2889 2.0592 0.4724 33 1 4.1302 0.9281 0.2243 34 1 3.5495 2.2720 1.2640 35 1 2.3782 0.7705 2.7422 36 1 3.8019 -0.2336 2.3133 37 1 -1.0036 -3.4954 2.9167 38 1 -0.8178 -1.9460 3.7791 39 1 -0.3830 -4.0344 5.1956 40 1 0.9463 -2.8485 5.1757 41 1 3.1239 -6.6531 4.0997 42 1 1.9938 -6.9377 2.7543 43 1 2.1341 -12.3967 4.9670 44 1 3.0272 -3.5027 3.5719 45 1 2.8471 -5.0527 2.7092 46 1 1.0763 -4.1533 1.3081 47 1 2.4042 -2.9660 1.2834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152254052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:59 Heat of formation + Delta-G solvation = -34.867776 kcal Electronic energy + Delta-G solvation = -28062.428324 eV Core-core repulsion = 24179.447950 eV Total energy + Delta-G solvation = -3882.980373 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32352 -39.79718 -38.17805 -36.88667 -34.17652 -32.47864 -32.47069 -32.26358 -29.91452 -29.47356 -27.40824 -25.96932 -25.53314 -24.22208 -23.41212 -21.83241 -21.64774 -19.95105 -18.66205 -18.13785 -17.46151 -16.72707 -16.64265 -16.02261 -15.85481 -15.57502 -15.52949 -15.39782 -14.84385 -14.51153 -14.26849 -14.11281 -13.87813 -13.70320 -13.36320 -13.24969 -12.84062 -12.62998 -12.57339 -12.29578 -12.03147 -11.97909 -11.86673 -11.78716 -11.58779 -11.52154 -11.41404 -11.16075 -11.10506 -11.05678 -10.78928 -10.28759 -9.84335 -9.52632 -9.42648 -9.11491 -8.66456 -8.44426 -8.27871 -6.55588 -6.25983 -3.97162 2.12933 2.44560 2.89350 2.94321 3.18680 3.22451 3.27935 3.50620 3.60043 3.91138 4.15231 4.16706 4.22340 4.40961 4.49204 4.64401 4.67902 4.83724 4.92983 4.97907 5.02687 5.05685 5.09473 5.11131 5.22348 5.30337 5.31309 5.32505 5.42116 5.44165 5.45981 5.52078 5.59272 5.64425 5.71543 5.73535 5.74373 5.79221 6.01894 6.10228 6.40875 6.44175 6.51760 6.97068 7.40301 7.55454 7.75437 8.30776 8.43322 9.19491 10.81450 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019731 B = 0.002311 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.780518 B =12114.973648 C =12971.756004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.509 5.509 3 C 0.038 3.962 4 C -0.126 4.126 5 C -0.128 4.128 6 C 0.044 3.956 7 H 0.110 0.890 8 C 0.508 3.492 9 O -0.540 6.540 10 N -0.606 5.606 11 C 0.097 3.903 12 C 0.101 3.899 13 N -0.622 5.622 14 C 0.536 3.464 15 O -0.513 6.513 16 C -0.151 4.151 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.095 3.905 27 C 0.085 3.915 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 25.535 -9.486 27.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.233 5.233 3 C -0.090 4.090 4 C -0.164 4.164 5 C -0.167 4.167 6 C -0.066 4.066 7 H 0.127 0.873 8 C 0.296 3.704 9 O -0.417 6.417 10 N -0.340 5.340 11 C -0.026 4.026 12 C -0.022 4.022 13 N -0.359 5.359 14 C 0.324 3.676 15 O -0.386 6.386 16 C -0.302 4.302 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.746 3.254 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.030 4.030 27 C -0.039 4.039 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.123 0.877 46 H 0.100 0.900 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.721 25.041 -8.460 26.442 hybrid contribution 1.536 -0.074 -0.816 1.741 sum 2.257 24.967 -9.277 26.731 Atomic orbital electron populations 1.22919 0.86927 1.02345 1.02062 1.64080 1.09120 1.14882 1.35268 1.23165 0.95730 0.89252 1.00813 1.22743 0.97755 0.99366 0.96575 1.22790 0.99050 0.96441 0.98401 1.22861 0.94356 0.99580 0.89851 0.87272 1.21044 0.86657 0.81730 0.81003 1.90668 1.43768 1.51131 1.56116 1.48161 1.33961 1.07269 1.44627 1.22057 0.90126 1.00401 0.89986 1.21891 0.94632 0.90307 0.95413 1.48062 1.34261 1.07359 1.46213 1.20402 0.84540 0.81811 0.80857 1.90703 1.34987 1.79469 1.33473 1.23555 1.01105 1.01366 1.04155 1.85455 1.45940 0.92736 1.59262 1.22882 1.19321 0.95031 1.31065 0.90854 1.25004 0.96444 0.96995 0.95187 1.70031 1.34948 1.12057 1.33179 0.86109 0.80448 0.79757 0.79127 1.19586 1.20562 1.20560 1.22192 0.90255 1.00780 0.89749 1.22484 0.94066 0.91097 0.96222 0.91916 0.91602 0.91979 0.89682 0.92982 0.90205 0.90328 0.90443 0.89843 0.90712 0.88015 0.87574 0.91407 0.89173 0.89168 0.92198 0.90836 0.87734 0.90043 0.87908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 8.21 60.06 0.49 0.55 16 2 N -0.51 -4.47 5.44 -232.94 -1.27 -5.74 16 3 C 0.04 0.27 6.73 -2.30 -0.02 0.26 16 4 C -0.13 -0.73 7.08 -24.45 -0.17 -0.91 16 5 C -0.13 -0.89 6.47 -24.77 -0.16 -1.05 16 6 C 0.04 0.36 3.55 -67.88 -0.24 0.12 16 7 H 0.11 0.73 5.13 -51.93 -0.27 0.47 16 8 C 0.51 5.24 4.74 -10.99 -0.05 5.19 16 9 O -0.54 -7.10 13.28 5.55 0.07 -7.03 16 10 N -0.61 -5.85 2.95 -172.21 -0.51 -6.36 16 11 C 0.10 1.02 6.58 -3.60 -0.02 1.00 16 12 C 0.10 1.18 6.59 -3.60 -0.02 1.16 16 13 N -0.62 -8.11 2.94 -172.22 -0.51 -8.62 16 14 C 0.54 9.59 7.72 -10.98 -0.08 9.50 16 15 O -0.51 -11.25 15.27 5.55 0.08 -11.16 16 16 C -0.15 -2.88 4.50 36.00 0.16 -2.72 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 18 C -0.53 -14.78 9.50 30.94 0.29 -14.48 16 19 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 20 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 21 N -0.87 -25.72 13.22 55.49 0.73 -24.98 16 22 Si 0.92 20.92 29.55 -169.99 -5.02 15.89 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.09 0.87 6.53 -3.37 -0.02 0.85 16 27 C 0.08 0.67 6.54 -3.37 -0.02 0.65 16 28 H 0.06 0.71 5.84 -51.93 -0.30 0.41 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.65 6.97 -51.93 -0.36 0.29 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.41 7.63 -51.93 -0.40 0.01 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.66 7.66 -51.92 -0.40 0.26 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.10 1.09 7.02 -51.93 -0.36 0.72 16 39 H 0.11 1.39 6.99 -51.93 -0.36 1.03 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.57 7.90 -51.92 -0.41 1.16 16 42 H 0.09 1.56 7.73 -51.92 -0.40 1.15 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.10 0.93 5.91 -51.93 -0.31 0.62 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.10 0.57 5.03 -51.93 -0.26 0.30 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -35.02 378.01 -10.08 -45.09 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.18 Total: -1.03 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 0.03 Total: 2.05 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -1.55 Total: -45.70 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.16 Total: -18.19 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.02 -10.08 -45.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152254052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.226 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds