Wall clock time and date at job start Wed Apr 1 2020 01:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47842 * 111.00045 * 2 1 4 4 C 1.54914 * 104.79556 * 146.36323 * 3 2 1 5 5 C 1.55390 * 101.74125 * 323.02085 * 4 3 2 6 6 C 1.47450 * 111.00155 * 120.84382 * 2 1 3 7 7 H 1.09004 * 109.88557 * 117.17365 * 6 2 1 8 8 C 1.50696 * 109.88499 * 356.15080 * 6 2 1 9 9 O 1.21288 * 120.00099 * 305.93521 * 8 6 2 10 10 N 1.34779 * 120.00463 * 125.93854 * 8 6 2 11 11 C 1.46961 * 120.59718 * 175.03829 * 10 8 6 12 12 C 1.53373 * 108.63454 * 235.20370 * 11 10 8 13 13 N 1.46961 * 108.63570 * 310.57955 * 12 11 10 14 14 C 1.34783 * 120.59207 * 235.19923 * 13 12 11 15 15 O 1.21284 * 119.99856 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99872 * 180.02562 * 14 13 12 17 17 S 1.81004 * 109.47136 * 180.02562 * 16 14 13 18 18 C 1.76190 * 100.00102 * 179.97438 * 17 16 14 19 19 H 1.08011 * 120.00089 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00359 * 179.97438 * 18 17 16 21 21 N 1.31638 * 119.99517 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00515 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47265 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47347 * 119.99464 * 22 20 18 25 25 H 1.48500 * 109.47538 * 240.00094 * 22 20 18 26 26 C 1.46960 * 118.81376 * 55.47785 * 13 12 11 27 27 C 1.46971 * 120.58765 * 355.02280 * 10 8 6 28 28 H 1.08995 * 109.47129 * 308.67033 * 1 2 3 29 29 H 1.09002 * 109.47004 * 68.67132 * 1 2 3 30 30 H 1.09004 * 109.46954 * 188.67166 * 1 2 3 31 31 H 1.09001 * 110.37809 * 265.19386 * 3 2 1 32 32 H 1.09004 * 110.37521 * 27.53624 * 3 2 1 33 33 H 1.09000 * 110.98971 * 81.02350 * 4 3 2 34 34 H 1.09000 * 110.98786 * 204.83730 * 4 3 2 35 35 H 1.09009 * 110.68141 * 277.17524 * 5 4 3 36 36 H 1.09005 * 110.84479 * 153.86612 * 5 4 3 37 37 H 1.08999 * 109.60573 * 115.46214 * 11 10 8 38 38 H 1.08995 * 109.60938 * 354.95003 * 11 10 8 39 39 H 1.09003 * 109.61015 * 190.82998 * 12 11 10 40 40 H 1.09005 * 109.74714 * 70.40688 * 12 11 10 41 41 H 1.08998 * 109.47247 * 60.00015 * 16 14 13 42 42 H 1.09000 * 109.47070 * 300.00204 * 16 14 13 43 43 H 0.97003 * 119.99616 * 179.97438 * 21 20 18 44 44 H 1.09007 * 109.60569 * 64.26581 * 26 13 12 45 45 H 1.08998 * 109.61326 * 184.77434 * 26 13 12 46 46 H 1.09003 * 109.60584 * 244.54041 * 27 10 8 47 47 H 1.09004 * 109.61052 * 4.87562 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3048 1.3027 0.8297 5 6 2.9182 0.2789 1.9328 6 6 1.9974 -0.7058 1.1819 7 1 2.5673 -1.5801 0.8675 8 6 0.8611 -1.1292 2.0765 9 8 0.0541 -0.3095 2.4610 10 7 0.7416 -2.4188 2.4496 11 6 -0.2956 -2.8275 3.4072 12 6 0.3770 -3.5586 4.5758 13 7 1.2813 -4.5813 4.0318 14 6 1.1619 -5.8710 4.4048 15 8 0.3021 -6.1963 5.1959 16 6 2.0969 -6.9086 3.8391 17 16 1.6849 -8.5313 4.5273 18 6 2.8962 -9.5230 3.7188 19 1 3.5968 -9.0684 3.0338 20 6 2.9502 -10.8884 3.9621 21 7 2.0966 -11.4423 4.7973 22 14 4.2338 -11.9400 3.1045 23 1 5.0664 -11.0834 2.2221 24 1 5.0983 -12.5926 4.1203 25 1 3.5572 -12.9800 2.2885 26 6 2.3221 -4.1718 3.0785 27 6 1.6461 -3.4416 1.9056 28 1 -0.3633 0.6421 0.8023 29 1 -0.3633 0.3738 -0.9573 30 1 -0.3633 -1.0160 0.1549 31 1 2.2148 1.7039 -1.0182 32 1 1.2889 2.0592 0.4724 33 1 4.1302 0.9281 0.2243 34 1 3.5495 2.2720 1.2640 35 1 2.3782 0.7705 2.7422 36 1 3.8019 -0.2336 2.3133 37 1 -1.0036 -3.4954 2.9167 38 1 -0.8178 -1.9460 3.7791 39 1 -0.3830 -4.0344 5.1956 40 1 0.9463 -2.8485 5.1757 41 1 3.1239 -6.6531 4.0997 42 1 1.9938 -6.9377 2.7543 43 1 2.1341 -12.3967 4.9670 44 1 3.0272 -3.5027 3.5719 45 1 2.8471 -5.0527 2.7092 46 1 1.0763 -4.1533 1.3081 47 1 2.4042 -2.9660 1.2834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152254052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:58 Heat of formation + Delta-G solvation = -60.179720 kcal Electronic energy + Delta-G solvation = -28063.525932 eV Core-core repulsion = 24179.447950 eV Total energy + Delta-G solvation = -3884.077982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.11124 -40.94022 -39.04045 -37.87057 -35.24167 -34.56105 -33.19117 -33.06299 -30.82331 -30.56929 -28.40662 -27.61537 -26.64015 -25.07577 -24.27290 -22.65426 -22.21150 -20.96041 -19.94647 -19.29765 -18.73427 -17.83881 -17.44246 -16.99464 -16.88398 -16.85362 -16.71280 -16.24518 -16.15906 -15.79532 -15.25000 -15.11495 -14.81837 -14.72260 -14.55775 -14.46043 -13.93773 -13.50538 -13.50002 -13.35549 -13.14625 -12.94212 -12.90109 -12.84058 -12.65735 -12.60188 -12.47487 -12.41016 -12.06497 -12.03116 -11.70940 -11.67692 -11.14190 -11.05829 -10.93200 -10.42995 -10.22712 -9.52108 -9.29294 -8.65513 -8.32863 -6.10864 1.24509 1.33933 1.43601 1.45463 1.56049 1.57452 1.74403 2.12280 2.28937 2.96125 3.01956 3.23653 3.23978 3.56457 3.62472 3.68860 3.72270 3.92699 3.94098 4.07957 4.14800 4.20848 4.29743 4.32155 4.35731 4.43688 4.49246 4.51740 4.57758 4.60766 4.67307 4.72945 4.79930 4.88123 4.92568 4.94638 5.01421 5.06912 5.24558 5.31234 5.40897 5.44688 5.77676 5.84971 6.13554 6.22273 6.27915 6.96824 7.08667 7.09317 8.76498 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019731 B = 0.002311 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.780518 B =12114.973648 C =12971.756004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.513 5.513 3 C 0.033 3.967 4 C -0.119 4.119 5 C -0.127 4.127 6 C 0.044 3.956 7 H 0.132 0.868 8 C 0.507 3.493 9 O -0.573 6.573 10 N -0.606 5.606 11 C 0.106 3.894 12 C 0.105 3.895 13 N -0.609 5.609 14 C 0.535 3.465 15 O -0.565 6.565 16 C -0.123 4.123 17 S -0.158 6.158 18 C -0.540 4.540 19 H 0.087 0.913 20 C 0.011 3.989 21 N -0.913 5.913 22 Si 0.999 3.001 23 H -0.252 1.252 24 H -0.276 1.276 25 H -0.277 1.277 26 C 0.087 3.913 27 C 0.087 3.913 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.039 0.961 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.270 0.730 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.463 26.838 -11.846 29.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.237 5.237 3 C -0.095 4.095 4 C -0.157 4.157 5 C -0.166 4.166 6 C -0.066 4.066 7 H 0.149 0.851 8 C 0.296 3.704 9 O -0.452 6.452 10 N -0.339 5.339 11 C -0.018 4.018 12 C -0.018 4.018 13 N -0.344 5.344 14 C 0.323 3.677 15 O -0.443 6.443 16 C -0.274 4.274 17 S 0.069 5.931 18 C -0.688 4.688 19 H 0.105 0.895 20 C -0.193 4.193 21 N -0.550 5.550 22 Si 0.821 3.179 23 H -0.176 1.176 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.035 4.035 27 C -0.035 4.035 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.079 0.921 44 H 0.116 0.884 45 H 0.132 0.868 46 H 0.098 0.902 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.850 26.395 -10.859 28.800 hybrid contribution 0.533 -0.298 -0.104 0.619 sum 4.383 26.097 -10.963 28.644 Atomic orbital electron populations 1.22773 0.87825 1.01087 1.01755 1.64170 1.08250 1.15894 1.35416 1.23264 0.96209 0.88209 1.01777 1.22757 0.97227 0.99704 0.96020 1.22820 0.99245 0.96485 0.98041 1.23036 0.93619 1.00597 0.89359 0.85108 1.21512 0.86778 0.81383 0.80750 1.90665 1.45132 1.52074 1.57373 1.48234 1.33826 1.07631 1.44220 1.21854 0.90283 0.99840 0.89795 1.21915 0.94267 0.89845 0.95809 1.48033 1.34708 1.05782 1.45838 1.20228 0.83799 0.83161 0.80505 1.90691 1.37020 1.80617 1.35955 1.23370 1.02348 0.96830 1.04840 1.85694 1.47434 0.98651 1.61282 1.23222 1.19161 0.95471 1.30900 0.89514 1.26143 0.98750 0.98610 0.95846 1.70204 1.37220 1.12451 1.35115 0.84902 0.77386 0.77668 0.77979 1.17587 1.20205 1.20218 1.22562 0.89611 1.01862 0.89495 1.22621 0.94381 0.90706 0.95804 0.94021 0.90645 0.93157 0.88486 0.94244 0.88698 0.89337 0.92498 0.87623 0.91359 0.88381 0.89533 0.89945 0.86919 0.86818 0.92116 0.88394 0.86753 0.90205 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 8.21 127.69 1.05 1.31 16 2 N -0.51 -7.92 5.44 -890.90 -4.85 -12.77 16 3 C 0.03 0.40 6.73 86.78 0.58 0.99 16 4 C -0.12 -1.01 7.08 32.07 0.23 -0.79 16 5 C -0.13 -1.39 6.47 31.86 0.21 -1.19 16 6 C 0.04 0.60 3.55 44.51 0.16 0.76 16 7 H 0.13 1.15 5.13 -2.38 -0.01 1.14 16 8 C 0.51 9.64 4.74 87.66 0.42 10.05 16 9 O -0.57 -14.96 13.28 -3.05 -0.04 -15.00 16 10 N -0.61 -10.48 2.95 -817.14 -2.41 -12.89 16 11 C 0.11 2.16 6.58 86.42 0.57 2.73 16 12 C 0.11 2.38 6.59 86.42 0.57 2.95 16 13 N -0.61 -14.85 2.94 -817.15 -2.40 -17.26 16 14 C 0.53 18.89 7.72 87.66 0.68 19.57 16 15 O -0.56 -25.57 15.27 -3.04 -0.05 -25.61 16 16 C -0.12 -4.52 4.50 71.23 0.32 -4.20 16 17 S -0.16 -8.50 20.57 -56.49 -1.16 -9.66 16 18 C -0.54 -29.64 9.50 67.95 0.65 -29.00 16 19 H 0.09 4.35 7.80 -2.90 -0.02 4.33 16 20 C 0.01 0.61 5.49 84.86 0.47 1.08 16 21 N -0.91 -55.32 13.22 21.65 0.29 -55.03 16 22 Si 1.00 42.34 29.55 68.60 2.03 44.37 16 23 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 24 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 26 C 0.09 1.29 6.53 86.56 0.57 1.85 16 27 C 0.09 1.07 6.54 86.56 0.57 1.64 16 28 H 0.04 0.96 5.84 -2.39 -0.01 0.94 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.03 6.97 -2.38 -0.02 1.01 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 0.58 7.63 -2.39 -0.02 0.57 16 33 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.88 7.66 -2.38 -0.02 0.86 16 36 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 2.11 7.02 -2.39 -0.02 2.10 16 39 H 0.09 2.35 6.99 -2.39 -0.02 2.34 16 40 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.11 3.64 7.90 -2.40 -0.02 3.62 16 42 H 0.11 3.64 7.73 -2.40 -0.02 3.62 16 43 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.11 1.53 5.91 -2.39 -0.01 1.51 16 46 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.14 0.81 5.03 -2.39 -0.01 0.80 16 Total: -1.00 -79.76 378.01 -0.60 -80.37 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.98 Total: 15.75 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 7.02 Total: 7.74 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -9.38 Total: -97.95 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -0.09 Total: -40.62 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -79.76 -0.60 -80.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152254052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.187 kcal (2) G-P(sol) polarization free energy of solvation -79.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds