Wall clock time and date at job start Wed Apr 1 2020 00:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47376 * 2 1 4 4 C 1.50699 * 109.47219 * 120.00470 * 2 1 3 5 5 H 1.07996 * 120.00175 * 119.99562 * 4 2 1 6 6 C 1.37884 * 119.99748 * 300.27611 * 4 2 1 7 7 N 1.31512 * 119.99934 * 359.71994 * 6 4 2 8 8 Si 1.86798 * 119.99829 * 179.72363 * 6 4 2 9 9 H 1.48499 * 109.47174 * 90.00003 * 8 6 4 10 10 H 1.48504 * 109.46914 * 209.99514 * 8 6 4 11 11 H 1.48496 * 109.47200 * 329.99710 * 8 6 4 12 12 N 1.46503 * 109.47191 * 240.00250 * 2 1 3 13 13 C 1.34775 * 119.99837 * 84.99603 * 12 2 1 14 14 O 1.21589 * 120.00114 * 0.02562 * 13 12 2 15 15 N 1.34782 * 119.99495 * 179.97438 * 13 12 2 16 16 C 1.39966 * 119.99340 * 175.39302 * 15 13 12 17 17 C 1.38984 * 120.00145 * 214.82713 * 16 15 13 18 18 C 1.38200 * 120.21825 * 179.76552 * 17 16 15 19 19 C 1.38042 * 120.21073 * 0.51765 * 18 17 16 20 20 C 1.39537 * 119.99824 * 359.73871 * 19 18 17 21 21 C 1.47947 * 120.10579 * 179.97438 * 20 19 18 22 22 N 1.31437 * 126.53949 * 195.05123 * 21 20 19 23 23 N 1.28524 * 109.70898 * 180.02562 * 22 21 20 24 24 C 1.30781 * 110.03220 * 0.07385 * 23 22 21 25 25 N 1.35771 * 107.42392 * 359.59583 * 24 23 22 26 26 C 1.46748 * 111.09450 * 180.02562 * 25 24 23 27 27 C 1.54426 * 105.63909 * 343.29160 * 26 25 24 28 28 C 1.51360 * 142.75927 * 179.78426 * 24 23 22 29 29 C 1.38597 * 120.00565 * 35.10511 * 16 15 13 30 30 H 1.09003 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47149 * 299.99655 * 1 2 3 32 32 H 1.09005 * 109.47036 * 59.99514 * 1 2 3 33 33 H 0.97003 * 119.99860 * 179.97438 * 7 6 4 34 34 H 0.96999 * 119.99708 * 265.00253 * 12 2 1 35 35 H 0.96991 * 120.00371 * 355.39250 * 15 13 12 36 36 H 1.08006 * 119.88684 * 0.02562 * 17 16 15 37 37 H 1.07992 * 119.89902 * 180.25273 * 18 17 16 38 38 H 1.08002 * 120.00398 * 179.72246 * 19 18 17 39 39 H 1.08995 * 110.36594 * 224.15556 * 26 25 24 40 40 H 1.08997 * 110.02549 * 102.24825 * 26 25 24 41 41 H 1.09002 * 110.93980 * 267.35096 * 27 26 25 42 42 H 1.09002 * 110.94104 * 143.65640 * 27 26 25 43 43 H 1.08994 * 110.46601 * 315.23533 * 28 24 23 44 44 H 1.08997 * 110.46377 * 77.69478 * 28 24 23 45 45 H 1.08000 * 120.10514 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6945 -0.2428 2.4827 7 7 0.9385 0.8265 2.6034 8 14 2.3109 -1.1280 4.0078 9 1 3.6177 -0.5548 4.4187 10 1 1.3285 -0.9598 5.1087 11 1 2.4763 -2.5730 3.7085 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 8 1.8582 1.1617 -2.4116 15 7 2.5968 -0.6534 -3.4575 16 6 2.6392 0.0180 -4.6848 17 6 2.3849 -0.6724 -5.8639 18 6 2.4208 -0.0129 -7.0778 19 6 2.7202 1.3338 -7.1280 20 6 2.9823 2.0346 -5.9502 21 6 3.3039 3.4778 -6.0013 22 7 3.8334 4.1962 -5.0364 23 7 3.9737 5.4121 -5.4282 24 6 3.5434 5.5394 -6.6567 25 7 3.1121 4.3185 -7.0649 26 6 2.6092 4.3695 -8.4426 27 6 2.3716 5.8653 -8.7440 28 6 3.3601 6.5473 -7.7709 29 6 2.9406 1.3703 -4.7250 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.7006 1.1553 3.4845 34 1 2.2490 -1.6317 -1.1527 35 1 2.8910 -1.5758 -3.3988 36 1 2.1542 -1.7271 -5.8309 37 1 2.2183 -0.5535 -7.9904 38 1 2.7518 1.8449 -8.0789 39 1 1.6745 3.8151 -8.5260 40 1 3.3529 3.9607 -9.1267 41 1 1.3438 6.1496 -8.5184 42 1 2.6207 6.0985 -9.7792 43 1 2.9345 7.4723 -7.3819 44 1 4.3107 6.7450 -8.2661 45 1 3.1434 1.9075 -3.8104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156941621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:32 Heat of formation + Delta-G solvation = 90.653616 kcal Electronic energy + Delta-G solvation = -28591.811158 eV Core-core repulsion = 24611.122601 eV Total energy + Delta-G solvation = -3980.688558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.30374 -40.22529 -38.46109 -37.50634 -35.22409 -34.32127 -32.88872 -32.37944 -31.31020 -29.87344 -29.43485 -28.16482 -27.73352 -25.22735 -23.82891 -23.02818 -22.77416 -21.44267 -20.86046 -20.60086 -19.79151 -18.17665 -17.81101 -17.21345 -16.30347 -16.20158 -15.82792 -15.34762 -15.13106 -14.81367 -14.75296 -14.28098 -14.00937 -13.91140 -13.77876 -13.61327 -13.45114 -13.12917 -12.85783 -12.37334 -12.23164 -11.91303 -11.84274 -11.67926 -11.58655 -11.39878 -11.06629 -10.99304 -10.76505 -10.48415 -10.36476 -10.27621 -10.20932 -10.15171 -9.67292 -9.36225 -9.02778 -8.54183 -8.39225 -8.15429 -7.78112 -6.09685 -4.19002 0.74404 1.37531 1.92539 2.19337 2.85101 3.13399 3.27297 3.33985 3.35698 3.40252 3.65289 3.88521 3.98472 4.09738 4.17996 4.30363 4.34648 4.70359 4.76031 4.86742 4.93456 4.97916 5.04907 5.12401 5.16459 5.22914 5.29046 5.37627 5.45422 5.58190 5.63390 5.95482 6.06012 6.21000 6.35875 6.42170 6.58914 6.70091 6.82204 6.99736 7.11613 7.13139 7.23632 7.47906 7.64332 7.84986 8.00990 8.17806 8.68730 8.74197 8.85916 9.24175 9.48958 10.96393 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.002406 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.269729 B =11636.929782 C =12837.753833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.717 5.717 13 C 0.690 3.310 14 O -0.575 6.575 15 N -0.696 5.696 16 C 0.185 3.815 17 C -0.141 4.141 18 C -0.099 4.099 19 C -0.133 4.133 20 C -0.006 4.006 21 C 0.248 3.752 22 N -0.262 5.262 23 N -0.276 5.276 24 C 0.152 3.848 25 N -0.497 5.497 26 C 0.102 3.898 27 C -0.129 4.129 28 C -0.038 4.038 29 C -0.077 4.077 30 H 0.025 0.975 31 H 0.091 0.909 32 H 0.015 0.985 33 H 0.265 0.735 34 H 0.386 0.614 35 H 0.404 0.596 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.531 2.324 -28.403 28.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.178 3.822 3 H 0.069 0.931 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.368 5.368 13 C 0.391 3.609 14 O -0.452 6.452 15 N -0.344 5.344 16 C 0.088 3.912 17 C -0.163 4.163 18 C -0.117 4.117 19 C -0.154 4.154 20 C -0.009 4.009 21 C -0.014 4.014 22 N -0.102 5.102 23 N -0.116 5.116 24 C -0.114 4.114 25 N -0.190 5.190 26 C -0.021 4.021 27 C -0.167 4.167 28 C -0.078 4.078 29 C -0.099 4.099 30 H 0.044 0.956 31 H 0.110 0.890 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.218 0.782 35 H 0.240 0.760 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.699 3.766 -26.768 27.166 hybrid contribution -0.067 -1.812 -0.278 1.834 sum 2.632 1.954 -27.045 27.243 Atomic orbital electron populations 1.22105 0.98540 0.99034 1.00980 1.18706 0.90848 0.93867 0.78778 0.93119 1.21191 1.32465 1.13360 0.90221 0.92069 1.24886 0.94803 0.94995 0.99045 1.69906 1.35670 1.22444 1.23919 0.86428 0.78612 0.79753 0.82159 1.20520 1.21081 1.19904 1.45866 1.68480 1.13300 1.09164 1.16200 0.78768 0.85539 0.80437 1.90918 1.56674 1.13885 1.83755 1.42857 1.68563 1.16396 1.06593 1.17393 0.97143 0.91849 0.84799 1.21023 1.03191 1.00646 0.91454 1.20676 1.00048 0.93687 0.97335 1.20940 1.03184 0.94889 0.96364 1.17314 1.02989 0.86439 0.94165 1.22589 1.02597 0.93134 0.83109 1.74860 1.16518 0.97171 1.21655 1.74001 1.19346 1.11106 1.07178 1.26118 1.01911 0.88204 0.95212 1.47501 1.48061 1.10171 1.13306 1.22438 1.01190 0.99506 0.78922 1.22824 1.01117 0.91841 1.00955 1.20635 1.01133 0.95978 0.90009 1.21496 0.96503 0.93704 0.98228 0.95550 0.89050 0.96611 0.92527 0.78159 0.76045 0.85349 0.85329 0.86693 0.88472 0.88754 0.89084 0.87706 0.87818 0.88054 0.82234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.42 16 2 C 0.28 7.25 2.56 -69.08 -0.18 7.08 16 3 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 4 C -0.53 -14.28 8.73 -34.44 -0.30 -14.58 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.28 11.31 55.43 0.63 -24.66 16 8 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.72 -15.07 5.07 -59.81 -0.30 -15.38 16 13 C 0.69 14.28 8.37 -86.91 -0.73 13.55 16 14 O -0.58 -14.40 13.44 5.29 0.07 -14.33 16 15 N -0.70 -10.72 5.34 -14.25 -0.08 -10.79 16 16 C 0.19 2.79 6.30 -83.73 -0.53 2.26 16 17 C -0.14 -1.59 9.96 -39.32 -0.39 -1.98 16 18 C -0.10 -0.97 10.02 -39.67 -0.40 -1.36 16 19 C -0.13 -1.47 9.67 -39.17 -0.38 -1.85 16 20 C -0.01 -0.09 5.87 -104.99 -0.62 -0.70 16 21 C 0.25 3.98 7.83 -154.19 -1.21 2.77 16 22 N -0.26 -5.08 11.99 32.52 0.39 -4.69 16 23 N -0.28 -4.87 12.20 33.06 0.40 -4.47 16 24 C 0.15 1.94 8.71 -154.19 -1.34 0.59 16 25 N -0.50 -5.93 3.61 -109.67 -0.40 -6.32 16 26 C 0.10 0.60 6.34 -3.16 -0.02 0.58 16 27 C -0.13 -0.45 7.16 -25.16 -0.18 -0.63 16 28 C -0.04 -0.23 6.85 -26.73 -0.18 -0.42 16 29 C -0.08 -1.34 8.34 -39.00 -0.33 -1.67 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.52 6.06 -51.93 -0.31 2.21 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.39 6.83 8.56 -40.82 -0.35 6.48 16 35 H 0.40 4.63 8.84 -40.82 -0.36 4.27 16 36 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 37 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.94 6.44 -52.49 -0.34 0.61 16 39 H 0.10 0.48 8.00 -51.93 -0.42 0.06 16 40 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.16 3.42 6.10 -52.49 -0.32 3.10 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -37.49 375.83 -11.01 -48.49 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.84 Total: 8.68 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -6.53 Total: 1.93 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: 0.65 Total: -66.32 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.07 Total: -14.33 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.49 -11.01 -48.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156941621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.146 kcal (2) G-P(sol) polarization free energy of solvation -37.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds