Wall clock time and date at job start Wed Apr 1 2020 00:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47376 * 2 1 4 4 C 1.50699 * 109.47219 * 120.00470 * 2 1 3 5 5 H 1.07996 * 120.00175 * 119.99562 * 4 2 1 6 6 C 1.37884 * 119.99748 * 300.27611 * 4 2 1 7 7 N 1.31512 * 119.99934 * 359.71994 * 6 4 2 8 8 Si 1.86798 * 119.99829 * 179.72363 * 6 4 2 9 9 H 1.48499 * 109.47174 * 90.00003 * 8 6 4 10 10 H 1.48504 * 109.46914 * 209.99514 * 8 6 4 11 11 H 1.48496 * 109.47200 * 329.99710 * 8 6 4 12 12 N 1.46503 * 109.47191 * 240.00250 * 2 1 3 13 13 C 1.34775 * 119.99837 * 84.99603 * 12 2 1 14 14 O 1.21589 * 120.00114 * 0.02562 * 13 12 2 15 15 N 1.34782 * 119.99495 * 179.97438 * 13 12 2 16 16 C 1.39966 * 119.99340 * 175.39302 * 15 13 12 17 17 C 1.38984 * 120.00145 * 214.82713 * 16 15 13 18 18 C 1.38200 * 120.21825 * 179.76552 * 17 16 15 19 19 C 1.38042 * 120.21073 * 0.51765 * 18 17 16 20 20 C 1.39537 * 119.99824 * 359.73871 * 19 18 17 21 21 C 1.47947 * 120.10579 * 179.97438 * 20 19 18 22 22 N 1.31437 * 126.53949 * 195.05123 * 21 20 19 23 23 N 1.28524 * 109.70898 * 180.02562 * 22 21 20 24 24 C 1.30781 * 110.03220 * 0.07385 * 23 22 21 25 25 N 1.35771 * 107.42392 * 359.59583 * 24 23 22 26 26 C 1.46748 * 111.09450 * 180.02562 * 25 24 23 27 27 C 1.54426 * 105.63909 * 343.29160 * 26 25 24 28 28 C 1.51360 * 142.75927 * 179.78426 * 24 23 22 29 29 C 1.38597 * 120.00565 * 35.10511 * 16 15 13 30 30 H 1.09003 * 109.47167 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47149 * 299.99655 * 1 2 3 32 32 H 1.09005 * 109.47036 * 59.99514 * 1 2 3 33 33 H 0.97003 * 119.99860 * 179.97438 * 7 6 4 34 34 H 0.96999 * 119.99708 * 265.00253 * 12 2 1 35 35 H 0.96991 * 120.00371 * 355.39250 * 15 13 12 36 36 H 1.08006 * 119.88684 * 0.02562 * 17 16 15 37 37 H 1.07992 * 119.89902 * 180.25273 * 18 17 16 38 38 H 1.08002 * 120.00398 * 179.72246 * 19 18 17 39 39 H 1.08995 * 110.36594 * 224.15556 * 26 25 24 40 40 H 1.08997 * 110.02549 * 102.24825 * 26 25 24 41 41 H 1.09002 * 110.93980 * 267.35096 * 27 26 25 42 42 H 1.09002 * 110.94104 * 143.65640 * 27 26 25 43 43 H 1.08994 * 110.46601 * 315.23533 * 28 24 23 44 44 H 1.08997 * 110.46377 * 77.69478 * 28 24 23 45 45 H 1.08000 * 120.10514 * 0.02562 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6945 -0.2428 2.4827 7 7 0.9385 0.8265 2.6034 8 14 2.3109 -1.1280 4.0078 9 1 3.6177 -0.5548 4.4187 10 1 1.3285 -0.9598 5.1087 11 1 2.4763 -2.5730 3.7085 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3571 14 8 1.8582 1.1617 -2.4116 15 7 2.5968 -0.6534 -3.4575 16 6 2.6392 0.0180 -4.6848 17 6 2.3849 -0.6724 -5.8639 18 6 2.4208 -0.0129 -7.0778 19 6 2.7202 1.3338 -7.1280 20 6 2.9823 2.0346 -5.9502 21 6 3.3039 3.4778 -6.0013 22 7 3.8334 4.1962 -5.0364 23 7 3.9737 5.4121 -5.4282 24 6 3.5434 5.5394 -6.6567 25 7 3.1121 4.3185 -7.0649 26 6 2.6092 4.3695 -8.4426 27 6 2.3716 5.8653 -8.7440 28 6 3.3601 6.5473 -7.7709 29 6 2.9406 1.3703 -4.7250 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.7006 1.1553 3.4845 34 1 2.2490 -1.6317 -1.1527 35 1 2.8910 -1.5758 -3.3988 36 1 2.1542 -1.7271 -5.8309 37 1 2.2183 -0.5535 -7.9904 38 1 2.7518 1.8449 -8.0789 39 1 1.6745 3.8151 -8.5260 40 1 3.3529 3.9607 -9.1267 41 1 1.3438 6.1496 -8.5184 42 1 2.6207 6.0985 -9.7792 43 1 2.9345 7.4723 -7.3819 44 1 4.3107 6.7450 -8.2661 45 1 3.1434 1.9075 -3.8104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156941621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:31 Heat of formation + Delta-G solvation = 63.965936 kcal Electronic energy + Delta-G solvation = -28592.968423 eV Core-core repulsion = 24611.122601 eV Total energy + Delta-G solvation = -3981.845822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.29827 -41.62944 -39.75591 -38.22519 -36.97702 -35.87368 -34.40413 -33.81151 -32.13897 -31.39654 -30.34897 -29.72182 -28.50110 -27.36143 -24.92815 -24.32191 -23.34120 -22.86443 -21.89170 -21.71556 -21.45422 -19.81690 -18.93419 -18.02417 -17.87934 -17.34981 -17.09644 -16.74945 -16.53179 -16.16398 -15.76616 -15.65477 -15.41416 -15.03394 -14.67207 -14.42685 -14.33766 -14.26492 -14.09738 -13.96260 -13.70637 -12.99310 -12.94315 -12.89582 -12.78293 -12.65579 -12.54330 -12.44251 -12.28692 -12.24420 -12.13125 -11.68899 -11.45305 -11.13971 -11.08207 -11.04073 -10.63972 -10.62651 -9.89791 -9.49869 -9.07976 -8.19039 -6.37048 -0.26009 0.33386 0.96976 1.36941 1.43665 1.45408 1.55752 1.72019 1.75959 2.16100 2.40856 2.69815 2.83847 3.11462 3.16879 3.41080 3.42642 3.73168 3.89320 3.99836 4.08997 4.13920 4.27875 4.36215 4.46209 4.50320 4.58730 4.70021 4.70926 4.81051 4.88562 4.93243 4.97422 5.06394 5.09480 5.12679 5.25881 5.29453 5.39268 5.42689 5.49880 5.57527 5.63878 5.82080 5.83017 5.97751 6.06805 6.23700 6.70906 7.21120 7.31925 7.59715 7.65601 8.87800 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016040 B = 0.002406 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.269729 B =11636.929782 C =12837.753833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.288 3.712 3 H -0.007 1.007 4 C -0.545 4.545 5 H 0.077 0.923 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.977 3.023 9 H -0.280 1.280 10 H -0.283 1.283 11 H -0.256 1.256 12 N -0.712 5.712 13 C 0.689 3.311 14 O -0.626 6.626 15 N -0.674 5.674 16 C 0.156 3.844 17 C -0.121 4.121 18 C -0.082 4.082 19 C -0.114 4.114 20 C -0.025 4.025 21 C 0.233 3.767 22 N -0.333 5.333 23 N -0.342 5.342 24 C 0.159 3.841 25 N -0.492 5.492 26 C 0.084 3.916 27 C -0.112 4.112 28 C -0.038 4.038 29 C -0.115 4.115 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.007 0.993 33 H 0.266 0.734 34 H 0.405 0.595 35 H 0.425 0.575 36 H 0.167 0.833 37 H 0.183 0.817 38 H 0.152 0.848 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.093 0.907 42 H 0.149 0.851 43 H 0.113 0.887 44 H 0.127 0.873 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.201 -0.319 -33.196 33.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.184 3.816 3 H 0.011 0.989 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.189 4.189 7 N -0.558 5.558 8 Si 0.801 3.199 9 H -0.206 1.206 10 H -0.208 1.208 11 H -0.180 1.180 12 N -0.364 5.364 13 C 0.389 3.611 14 O -0.507 6.507 15 N -0.324 5.324 16 C 0.060 3.940 17 C -0.142 4.142 18 C -0.100 4.100 19 C -0.135 4.135 20 C -0.029 4.029 21 C -0.031 4.031 22 N -0.172 5.172 23 N -0.182 5.182 24 C -0.110 4.110 25 N -0.185 5.185 26 C -0.035 4.035 27 C -0.150 4.150 28 C -0.078 4.078 29 C -0.138 4.138 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.241 0.759 35 H 0.264 0.736 36 H 0.185 0.815 37 H 0.200 0.800 38 H 0.170 0.830 39 H 0.130 0.870 40 H 0.142 0.858 41 H 0.112 0.888 42 H 0.167 0.833 43 H 0.131 0.869 44 H 0.145 0.855 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.391 1.061 -31.646 31.754 hybrid contribution 0.040 -0.899 0.988 1.337 sum 2.431 0.162 -30.658 30.755 Atomic orbital electron populations 1.21906 0.98264 0.99580 0.99383 1.18253 0.91016 0.91481 0.80831 0.98946 1.21526 1.32594 1.13739 0.90510 0.90500 1.25869 0.94838 0.95649 1.02516 1.70074 1.36935 1.24071 1.24671 0.85272 0.77627 0.79240 0.77735 1.20595 1.20847 1.17969 1.45407 1.68828 1.13974 1.08232 1.16344 0.78507 0.84900 0.81348 1.90909 1.58642 1.16396 1.84721 1.42423 1.67534 1.16985 1.05465 1.17659 0.99346 0.91314 0.85657 1.21455 1.00555 1.02198 0.90042 1.21312 0.97117 0.92990 0.98551 1.21379 1.00543 0.95589 0.95977 1.17504 1.04274 0.86245 0.94835 1.22774 1.02443 0.93936 0.83990 1.74697 1.19283 0.98568 1.24646 1.73796 1.22733 1.11135 1.10545 1.27312 0.98841 0.90312 0.94556 1.47853 1.47223 1.08798 1.14582 1.23101 1.02626 1.01877 0.75907 1.22934 1.00437 0.89294 1.02337 1.21075 1.03446 0.94848 0.88408 1.21173 1.00009 0.95169 0.97413 0.93659 0.91430 0.97360 0.92523 0.75914 0.73552 0.81516 0.79984 0.83026 0.87004 0.85755 0.88798 0.83276 0.86919 0.85547 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.06 9.26 71.98 0.67 -6.40 16 2 C 0.29 15.78 2.56 44.24 0.11 15.90 16 3 H -0.01 -0.49 7.58 -2.39 -0.02 -0.50 16 4 C -0.55 -29.82 8.73 25.60 0.22 -29.59 16 5 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 6 C 0.01 0.62 5.30 84.66 0.45 1.07 16 7 N -0.92 -54.91 11.31 21.45 0.24 -54.67 16 8 Si 0.98 43.24 29.54 68.60 2.03 45.27 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 12 N -0.71 -31.15 5.07 -461.41 -2.34 -33.49 16 13 C 0.69 30.33 8.37 179.05 1.50 31.83 16 14 O -0.63 -34.61 13.44 -3.99 -0.05 -34.67 16 15 N -0.67 -21.18 5.34 -317.27 -1.70 -22.87 16 16 C 0.16 4.73 6.30 38.11 0.24 4.97 16 17 C -0.12 -2.28 9.96 22.44 0.22 -2.06 16 18 C -0.08 -1.17 10.02 22.21 0.22 -0.95 16 19 C -0.11 -2.17 9.67 22.54 0.22 -1.95 16 20 C -0.03 -0.79 5.87 -20.10 -0.12 -0.90 16 21 C 0.23 8.03 7.83 136.41 1.07 9.10 16 22 N -0.33 -14.53 11.99 -51.02 -0.61 -15.14 16 23 N -0.34 -13.39 12.20 -49.33 -0.60 -14.00 16 24 C 0.16 4.15 8.71 138.02 1.20 5.35 16 25 N -0.49 -11.56 3.61 -500.89 -1.81 -13.37 16 26 C 0.08 0.67 6.34 86.82 0.55 1.22 16 27 C -0.11 -0.30 7.16 31.61 0.23 -0.07 16 28 C -0.04 -0.39 6.85 30.59 0.21 -0.18 16 29 C -0.11 -4.36 8.34 22.64 0.19 -4.17 16 30 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.07 3.93 6.06 -2.39 -0.01 3.91 16 32 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.41 14.33 8.56 -92.71 -0.79 13.54 16 35 H 0.43 9.27 8.84 -92.71 -0.82 8.46 16 36 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 37 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 38 H 0.15 1.71 6.44 -2.91 -0.02 1.69 16 39 H 0.11 0.61 8.00 -2.39 -0.02 0.59 16 40 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.15 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.10 5.04 6.10 -2.91 -0.02 5.02 16 Total: -1.00 -97.33 375.83 1.79 -95.55 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -0.56 Total: 24.23 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: 7.18 Total: 23.17 kcal Atomic # 7 Polarization: -146.72 SS G_CDS: -6.81 Total: -153.54 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.05 Total: -34.67 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -97.33 1.79 -95.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156941621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.514 kcal (2) G-P(sol) polarization free energy of solvation -97.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds