Wall clock time and date at job start Wed Apr 1 2020 01:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47026 * 2 1 4 4 C 1.46500 * 120.00269 * 275.23409 * 3 2 1 5 5 C 1.50697 * 109.46835 * 270.27300 * 4 3 2 6 6 H 1.08003 * 120.00315 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99753 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00262 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00283 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46750 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46977 * 119.99968 * 9 7 5 12 12 H 1.48493 * 109.47400 * 240.00575 * 9 7 5 13 13 C 1.34778 * 119.99461 * 95.50593 * 3 2 1 14 14 O 1.21666 * 120.00086 * 174.30632 * 13 3 2 15 15 C 1.46928 * 120.00218 * 354.31135 * 13 3 2 16 16 C 1.35296 * 119.99686 * 283.78190 * 15 13 3 17 17 C 1.47104 * 119.99693 * 171.80894 * 16 15 13 18 18 C 1.39885 * 120.17188 * 329.90942 * 17 16 15 19 19 C 1.37877 * 119.81642 * 179.76700 * 18 17 16 20 20 C 1.38412 * 120.17810 * 0.51444 * 19 18 17 21 21 C 1.38408 * 120.35211 * 359.74021 * 20 19 18 22 22 C 1.37879 * 120.17620 * 359.97438 * 21 20 19 23 23 N 1.40131 * 119.99684 * 103.78147 * 15 13 3 24 24 N 1.40600 * 127.38946 * 290.91053 * 23 15 13 25 25 N 1.28948 * 106.66189 * 179.83596 * 24 23 15 26 26 N 1.28426 * 110.19745 * 0.44573 * 25 24 23 27 27 C 1.30759 * 110.64609 * 359.70811 * 26 25 24 28 28 C 1.50697 * 126.36489 * 180.02562 * 27 26 25 29 29 H 1.09004 * 109.47193 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47300 * 299.99325 * 1 2 3 31 31 H 1.08997 * 109.47241 * 60.00078 * 1 2 3 32 32 H 1.09007 * 109.47341 * 240.00740 * 2 1 3 33 33 H 1.08992 * 109.47641 * 120.00518 * 2 1 3 34 34 H 1.09001 * 109.47132 * 30.27410 * 4 3 2 35 35 H 1.08996 * 109.46936 * 150.27498 * 4 3 2 36 36 H 0.96999 * 120.00437 * 180.02562 * 8 7 5 37 37 H 1.07995 * 120.00159 * 351.80755 * 16 15 13 38 38 H 1.07993 * 120.08742 * 0.02562 * 18 17 16 39 39 H 1.08007 * 119.91448 * 180.27131 * 19 18 17 40 40 H 1.08004 * 119.82293 * 179.71707 * 20 19 18 41 41 H 1.07996 * 119.90847 * 180.02562 * 21 20 19 42 42 H 1.07994 * 120.09022 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.47112 * 275.04200 * 28 27 26 44 44 H 1.09000 * 109.47496 * 35.04492 * 28 27 26 45 45 H 1.09005 * 109.47033 * 155.05114 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1534 2.1105 -1.2634 5 6 3.5314 1.8835 -1.8295 6 1 4.2362 1.2589 -1.3009 7 6 3.8923 2.4732 -3.0224 8 7 3.0342 3.2343 -3.6659 9 14 5.6007 2.1925 -3.7239 10 1 6.3693 1.3046 -2.8149 11 1 5.4884 1.5545 -5.0601 12 1 6.3024 3.4947 -3.8545 13 6 2.3485 1.9792 1.1619 14 8 2.8509 3.0873 1.1546 15 6 2.1018 1.2929 2.4374 16 6 0.8470 1.2282 2.9392 17 6 0.5681 0.3920 4.1168 18 6 1.3199 -0.7638 4.3524 19 6 1.0553 -1.5396 5.4611 20 6 0.0420 -1.1832 6.3340 21 6 -0.7098 -0.0439 6.1050 22 6 -0.4539 0.7457 5.0040 23 7 3.1663 0.7053 3.1341 24 7 3.9082 -0.4293 2.7609 25 7 4.7884 -0.6156 3.6846 26 7 4.6675 0.2779 4.5991 27 6 3.6957 1.1039 4.3110 28 6 3.2497 2.2821 5.1380 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 1.4061 1.7522 -1.9714 35 1 2.0044 3.1756 -1.0858 36 1 3.2880 3.6489 -4.5053 37 1 0.0503 1.7905 2.4752 38 1 2.1081 -1.0454 3.6700 39 1 1.6378 -2.4300 5.6469 40 1 -0.1633 -1.7975 7.1982 41 1 -1.4985 0.2277 6.7910 42 1 -1.0411 1.6345 4.8269 43 1 2.5461 1.9459 5.8996 44 1 4.1156 2.7372 5.6189 45 1 2.7646 3.0154 4.4938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161082988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:37 Heat of formation + Delta-G solvation = 143.778427 kcal Electronic energy + Delta-G solvation = -30501.354053 eV Core-core repulsion = 26522.969160 eV Total energy + Delta-G solvation = -3978.384893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.24054 -39.90444 -39.16266 -36.22783 -35.54555 -33.38908 -32.86275 -32.68447 -31.28463 -30.25455 -30.08508 -28.69213 -27.30827 -24.97722 -23.96455 -23.18154 -22.97959 -22.37540 -22.02229 -20.75581 -19.21868 -17.77032 -17.03575 -16.84987 -16.45440 -15.89448 -15.70750 -15.44227 -15.05202 -14.65738 -14.47014 -14.21397 -13.88947 -13.82559 -13.67598 -13.47675 -13.35987 -13.13949 -13.05798 -12.73245 -12.37287 -12.20715 -12.12331 -11.87275 -11.67541 -11.49393 -11.34985 -11.09581 -11.01136 -10.92465 -10.80545 -10.65914 -10.40248 -10.18686 -10.08013 -9.71018 -9.34811 -9.28426 -8.63787 -8.49493 -7.90973 -6.11468 -4.15852 0.16327 0.94182 1.03740 1.62049 1.67646 2.29261 3.08718 3.27998 3.35856 3.41255 3.43398 3.54522 3.93663 4.26012 4.41501 4.47802 4.48766 4.58820 4.74901 4.78084 4.97367 5.03825 5.14509 5.21026 5.23669 5.26018 5.27423 5.33933 5.45491 5.48185 5.52022 5.58068 5.65121 5.67931 5.69353 5.97941 6.05733 6.13762 6.15394 6.16178 6.39446 6.45527 6.56582 6.85431 7.22874 7.33298 7.84436 8.09319 8.12711 8.46104 8.59184 8.89460 9.49675 10.96791 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015179 B = 0.003701 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.170727 B = 7563.028582 C = 8333.192417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.571 5.571 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.545 3.455 14 O -0.518 6.518 15 C 0.071 3.929 16 C -0.039 4.039 17 C -0.079 4.079 18 C -0.107 4.107 19 C -0.116 4.116 20 C -0.105 4.105 21 C -0.122 4.122 22 C -0.091 4.091 23 N -0.322 5.322 24 N -0.077 5.077 25 N -0.037 5.037 26 N -0.335 5.335 27 C 0.270 3.730 28 C -0.081 4.081 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.162 0.838 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.382 -6.481 20.015 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.022 4.022 3 N -0.302 5.302 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 C 0.327 3.673 14 O -0.393 6.393 15 C -0.023 4.023 16 C -0.061 4.061 17 C -0.079 4.079 18 C -0.125 4.125 19 C -0.134 4.134 20 C -0.123 4.123 21 C -0.140 4.140 22 C -0.109 4.109 23 N -0.116 5.116 24 N -0.061 5.061 25 N -0.032 5.032 26 N -0.186 5.186 27 C -0.006 4.006 28 C -0.141 4.141 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.180 0.820 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.116 0.884 44 H 0.124 0.876 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.251 -6.903 19.528 23.110 hybrid contribution 0.325 0.416 -0.698 0.875 sum -9.926 -6.487 18.830 22.253 Atomic orbital electron populations 1.22254 0.96275 1.01887 1.02326 1.21529 0.93838 0.83467 1.03318 1.48285 1.61090 1.13462 1.07340 1.19419 0.97446 0.92772 0.77544 1.21426 0.98653 1.30561 1.05976 0.92299 1.24902 0.97578 0.94755 0.96642 1.69928 1.34967 1.31873 1.16539 0.86442 0.84130 0.78162 0.78776 1.19708 1.20816 1.20802 1.17683 0.80773 0.86079 0.82719 1.90865 1.42008 1.20032 1.86431 1.20071 0.85321 1.00470 0.96439 1.22634 0.94035 0.94996 0.94444 1.18883 0.97988 0.95735 0.95334 1.21822 0.98754 0.94235 0.97698 1.21124 0.97910 0.99842 0.94544 1.21346 0.95130 0.96769 0.99015 1.21111 0.99989 0.95151 0.97770 1.21350 0.96155 0.99490 0.93901 1.48674 1.25512 1.21132 1.16270 1.82717 1.03935 1.00225 1.19215 1.77989 1.12977 1.15712 0.96548 1.74445 1.17565 1.04227 1.22402 1.25785 0.90914 0.97874 0.86025 1.20540 1.03799 0.91265 0.98452 0.91884 0.93086 0.91624 0.89378 0.91398 0.94239 0.93688 0.92679 0.82047 0.85652 0.85771 0.85749 0.85477 0.85100 0.88393 0.87631 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.19 37.16 0.38 -1.79 16 2 C 0.10 1.68 5.86 -4.04 -0.02 1.65 16 3 N -0.57 -11.71 2.46 -176.51 -0.43 -12.15 16 4 C 0.25 6.19 5.14 -5.20 -0.03 6.16 16 5 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 6 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 8 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 9 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 13 C 0.55 11.05 7.24 -12.74 -0.09 10.96 16 14 O -0.52 -12.63 16.74 5.22 0.09 -12.55 16 15 C 0.07 1.10 3.49 -81.59 -0.28 0.81 16 16 C -0.04 -0.45 7.94 -37.03 -0.29 -0.75 16 17 C -0.08 -0.81 5.39 -105.07 -0.57 -1.37 16 18 C -0.11 -1.23 7.85 -39.10 -0.31 -1.54 16 19 C -0.12 -1.14 10.03 -39.65 -0.40 -1.53 16 20 C -0.10 -0.81 10.04 -39.45 -0.40 -1.21 16 21 C -0.12 -0.86 10.03 -39.65 -0.40 -1.26 16 22 C -0.09 -0.71 9.80 -39.10 -0.38 -1.09 16 23 N -0.32 -5.15 1.92 -6.71 -0.01 -5.16 16 24 N -0.08 -1.37 12.15 60.35 0.73 -0.64 16 25 N -0.04 -0.67 13.39 60.35 0.81 0.14 16 26 N -0.33 -5.44 12.15 32.75 0.40 -5.05 16 27 C 0.27 3.91 6.70 -155.18 -1.04 2.87 16 28 C -0.08 -0.80 10.27 36.00 0.37 -0.43 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.58 5.89 -51.93 -0.31 0.28 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.52 8.11 -51.92 -0.42 1.10 16 33 H 0.07 1.07 6.79 -51.93 -0.35 0.71 16 34 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 35 H 0.05 1.26 7.50 -51.93 -0.39 0.87 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.16 1.54 7.39 -52.49 -0.39 1.15 16 38 H 0.13 1.74 4.80 -52.49 -0.25 1.49 16 39 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 40 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.09 0.93 7.81 -51.93 -0.41 0.53 16 LS Contribution 385.05 15.07 5.80 5.80 Total: -1.00 -34.59 385.05 -6.64 -41.24 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.86 Total: -1.39 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -3.88 Total: -2.05 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 2.23 Total: -48.20 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.59 -6.64 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161082988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.015 kcal (2) G-P(sol) polarization free energy of solvation -34.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds