Wall clock time and date at job start Wed Apr 1 2020 01:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47026 * 2 1 4 4 C 1.46500 * 120.00269 * 275.23409 * 3 2 1 5 5 C 1.50697 * 109.46835 * 270.27300 * 4 3 2 6 6 H 1.08003 * 120.00315 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99753 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00262 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00283 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46750 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46977 * 119.99968 * 9 7 5 12 12 H 1.48493 * 109.47400 * 240.00575 * 9 7 5 13 13 C 1.34778 * 119.99461 * 95.50593 * 3 2 1 14 14 O 1.21666 * 120.00086 * 174.30632 * 13 3 2 15 15 C 1.46928 * 120.00218 * 354.31135 * 13 3 2 16 16 C 1.35296 * 119.99686 * 283.78190 * 15 13 3 17 17 C 1.47104 * 119.99693 * 171.80894 * 16 15 13 18 18 C 1.39885 * 120.17188 * 329.90942 * 17 16 15 19 19 C 1.37877 * 119.81642 * 179.76700 * 18 17 16 20 20 C 1.38412 * 120.17810 * 0.51444 * 19 18 17 21 21 C 1.38408 * 120.35211 * 359.74021 * 20 19 18 22 22 C 1.37879 * 120.17620 * 359.97438 * 21 20 19 23 23 N 1.40131 * 119.99684 * 103.78147 * 15 13 3 24 24 N 1.40600 * 127.38946 * 290.91053 * 23 15 13 25 25 N 1.28948 * 106.66189 * 179.83596 * 24 23 15 26 26 N 1.28426 * 110.19745 * 0.44573 * 25 24 23 27 27 C 1.30759 * 110.64609 * 359.70811 * 26 25 24 28 28 C 1.50697 * 126.36489 * 180.02562 * 27 26 25 29 29 H 1.09004 * 109.47193 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47300 * 299.99325 * 1 2 3 31 31 H 1.08997 * 109.47241 * 60.00078 * 1 2 3 32 32 H 1.09007 * 109.47341 * 240.00740 * 2 1 3 33 33 H 1.08992 * 109.47641 * 120.00518 * 2 1 3 34 34 H 1.09001 * 109.47132 * 30.27410 * 4 3 2 35 35 H 1.08996 * 109.46936 * 150.27498 * 4 3 2 36 36 H 0.96999 * 120.00437 * 180.02562 * 8 7 5 37 37 H 1.07995 * 120.00159 * 351.80755 * 16 15 13 38 38 H 1.07993 * 120.08742 * 0.02562 * 18 17 16 39 39 H 1.08007 * 119.91448 * 180.27131 * 19 18 17 40 40 H 1.08004 * 119.82293 * 179.71707 * 20 19 18 41 41 H 1.07996 * 119.90847 * 180.02562 * 21 20 19 42 42 H 1.07994 * 120.09022 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.47112 * 275.04200 * 28 27 26 44 44 H 1.09000 * 109.47496 * 35.04492 * 28 27 26 45 45 H 1.09005 * 109.47033 * 155.05114 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1534 2.1105 -1.2634 5 6 3.5314 1.8835 -1.8295 6 1 4.2362 1.2589 -1.3009 7 6 3.8923 2.4732 -3.0224 8 7 3.0342 3.2343 -3.6659 9 14 5.6007 2.1925 -3.7239 10 1 6.3693 1.3046 -2.8149 11 1 5.4884 1.5545 -5.0601 12 1 6.3024 3.4947 -3.8545 13 6 2.3485 1.9792 1.1619 14 8 2.8509 3.0873 1.1546 15 6 2.1018 1.2929 2.4374 16 6 0.8470 1.2282 2.9392 17 6 0.5681 0.3920 4.1168 18 6 1.3199 -0.7638 4.3524 19 6 1.0553 -1.5396 5.4611 20 6 0.0420 -1.1832 6.3340 21 6 -0.7098 -0.0439 6.1050 22 6 -0.4539 0.7457 5.0040 23 7 3.1663 0.7053 3.1341 24 7 3.9082 -0.4293 2.7609 25 7 4.7884 -0.6156 3.6846 26 7 4.6675 0.2779 4.5991 27 6 3.6957 1.1039 4.3110 28 6 3.2497 2.2821 5.1380 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 1.4061 1.7522 -1.9714 35 1 2.0044 3.1756 -1.0858 36 1 3.2880 3.6489 -4.5053 37 1 0.0503 1.7905 2.4752 38 1 2.1081 -1.0454 3.6700 39 1 1.6378 -2.4300 5.6469 40 1 -0.1633 -1.7975 7.1982 41 1 -1.4985 0.2277 6.7910 42 1 -1.0411 1.6345 4.8269 43 1 2.5461 1.9459 5.8996 44 1 4.1156 2.7372 5.6189 45 1 2.7646 3.0154 4.4938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161082988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:36 Heat of formation + Delta-G solvation = 122.677824 kcal Electronic energy + Delta-G solvation = -30502.269044 eV Core-core repulsion = 26522.969160 eV Total energy + Delta-G solvation = -3979.299884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.42021 -41.21254 -40.12774 -37.38482 -37.17136 -34.98375 -34.39534 -33.72348 -31.94220 -31.73992 -31.12166 -29.70042 -29.06392 -26.14365 -25.53111 -24.60931 -23.89552 -23.48880 -23.03594 -21.86104 -20.54690 -19.09334 -18.60102 -18.07432 -17.85785 -17.50207 -16.71521 -16.48487 -16.20057 -16.07552 -15.84299 -15.49175 -15.07883 -14.81223 -14.70275 -14.47943 -14.42055 -14.19724 -14.14115 -13.84465 -13.76804 -13.58867 -13.36839 -13.23954 -13.17222 -12.78743 -12.66150 -12.52975 -12.31240 -12.25533 -12.23121 -12.04378 -11.97621 -11.78746 -11.45286 -11.23811 -10.74473 -10.69898 -9.97153 -9.66474 -9.49356 -8.30342 -6.43208 -0.76873 -0.18376 0.38387 0.49455 0.79662 1.09464 1.29729 1.31857 1.43504 1.62239 2.06895 2.33438 2.76955 2.92766 2.99729 3.13498 3.46075 3.63990 3.83383 3.88422 3.99057 4.04715 4.18230 4.20267 4.27764 4.30160 4.34489 4.45664 4.48113 4.50710 4.57898 4.67801 4.83082 4.84672 4.89153 4.92407 4.97728 5.04012 5.10848 5.30043 5.35312 5.42866 5.45671 5.47958 5.51659 5.69808 5.94248 5.97524 6.44614 6.63292 7.01135 7.24409 7.27791 8.76945 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015179 B = 0.003701 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.170727 B = 7563.028582 C = 8333.192417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.101 3.899 3 N -0.577 5.577 4 C 0.264 3.736 5 C -0.547 4.547 6 H 0.039 0.961 7 C 0.018 3.982 8 N -0.919 5.919 9 Si 0.958 3.042 10 H -0.280 1.280 11 H -0.264 1.264 12 H -0.277 1.277 13 C 0.546 3.454 14 O -0.572 6.572 15 C 0.027 3.973 16 C 0.018 3.982 17 C -0.100 4.100 18 C -0.121 4.121 19 C -0.134 4.134 20 C -0.092 4.092 21 C -0.117 4.117 22 C -0.074 4.074 23 N -0.316 5.316 24 N -0.107 5.107 25 N -0.056 5.056 26 N -0.351 5.351 27 C 0.273 3.727 28 C -0.080 4.080 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.011 0.989 36 H 0.270 0.730 37 H 0.186 0.814 38 H 0.097 0.903 39 H 0.121 0.879 40 H 0.150 0.850 41 H 0.162 0.838 42 H 0.161 0.839 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.011 -6.786 22.565 27.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.022 4.022 3 N -0.306 5.306 4 C 0.144 3.856 5 C -0.585 4.585 6 H 0.057 0.943 7 C -0.182 4.182 8 N -0.558 5.558 9 Si 0.783 3.217 10 H -0.205 1.205 11 H -0.188 1.188 12 H -0.203 1.203 13 C 0.331 3.669 14 O -0.452 6.452 15 C -0.067 4.067 16 C -0.003 4.003 17 C -0.100 4.100 18 C -0.140 4.140 19 C -0.152 4.152 20 C -0.110 4.110 21 C -0.135 4.135 22 C -0.092 4.092 23 N -0.109 5.109 24 N -0.091 5.091 25 N -0.050 5.050 26 N -0.203 5.203 27 C -0.002 4.002 28 C -0.140 4.140 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.029 0.971 36 H 0.079 0.921 37 H 0.203 0.797 38 H 0.115 0.885 39 H 0.139 0.861 40 H 0.167 0.833 41 H 0.179 0.821 42 H 0.179 0.821 43 H 0.145 0.855 44 H 0.139 0.861 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.906 -7.250 22.084 26.586 hybrid contribution 0.998 0.463 -1.340 1.734 sum -11.908 -6.787 20.744 24.863 Atomic orbital electron populations 1.22177 0.92961 1.03823 1.02686 1.21705 0.96473 0.81084 1.02915 1.48242 1.61382 1.14673 1.06317 1.18862 0.95880 0.91362 0.79544 1.21623 0.99807 1.30644 1.06455 0.94288 1.25664 1.01183 0.94407 0.96916 1.70000 1.36558 1.32265 1.16974 0.85520 0.79606 0.78082 0.78532 1.20484 1.18829 1.20253 1.18280 0.79104 0.85471 0.84079 1.90808 1.44179 1.22537 1.87628 1.19286 0.86642 1.04734 0.96051 1.23012 0.92529 0.91677 0.93094 1.18815 0.99618 0.95609 0.95963 1.21711 0.98623 0.95568 0.98066 1.21218 0.99130 1.00015 0.94824 1.21700 0.93577 0.97000 0.98739 1.21529 1.00114 0.94143 0.97716 1.21694 0.94463 1.00095 0.92901 1.48543 1.25490 1.20353 1.16539 1.82636 1.04765 1.01856 1.19886 1.77942 1.13467 1.16603 0.97031 1.74380 1.18581 1.04755 1.22607 1.26606 0.89705 0.98013 0.85879 1.20828 1.05111 0.89576 0.98444 0.89099 0.91302 0.92616 0.90960 0.90654 0.94463 0.97133 0.92134 0.79687 0.88515 0.86112 0.83260 0.82076 0.82120 0.85464 0.86058 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 10.19 71.98 0.73 -3.13 16 2 C 0.10 3.37 5.86 86.38 0.51 3.88 16 3 N -0.58 -24.67 2.46 -830.59 -2.04 -26.71 16 4 C 0.26 13.97 5.14 85.63 0.44 14.41 16 5 C -0.55 -32.35 9.39 25.60 0.24 -32.11 16 6 H 0.04 2.40 7.81 -2.91 -0.02 2.38 16 7 C 0.02 1.07 5.46 84.65 0.46 1.53 16 8 N -0.92 -54.74 13.29 21.45 0.28 -54.46 16 9 Si 0.96 46.46 29.54 68.60 2.03 48.48 16 10 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 11 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 C 0.55 22.98 7.24 86.52 0.63 23.61 16 14 O -0.57 -29.43 16.74 -4.24 -0.07 -29.50 16 15 C 0.03 0.82 3.49 39.41 0.14 0.96 16 16 C 0.02 0.38 7.94 23.92 0.19 0.57 16 17 C -0.10 -1.73 5.39 -20.16 -0.11 -1.84 16 18 C -0.12 -2.62 7.85 22.58 0.18 -2.45 16 19 C -0.13 -2.35 10.03 22.23 0.22 -2.13 16 20 C -0.09 -1.04 10.04 22.35 0.22 -0.81 16 21 C -0.12 -0.99 10.03 22.23 0.22 -0.77 16 22 C -0.07 -0.77 9.80 22.58 0.22 -0.55 16 23 N -0.32 -10.31 1.92 -175.15 -0.34 -10.64 16 24 N -0.11 -4.01 12.15 37.02 0.45 -3.56 16 25 N -0.06 -2.07 13.39 37.02 0.50 -1.57 16 26 N -0.35 -11.65 12.15 -50.28 -0.61 -12.26 16 27 C 0.27 7.88 6.70 138.04 0.92 8.81 16 28 C -0.08 -1.44 10.27 71.24 0.73 -0.71 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.40 5.89 -2.39 -0.01 1.39 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 2.61 8.11 -2.38 -0.02 2.59 16 33 H 0.08 2.43 6.79 -2.39 -0.02 2.42 16 34 H 0.04 1.96 8.07 -2.39 -0.02 1.94 16 35 H 0.01 0.63 7.50 -2.39 -0.02 0.61 16 36 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 37 H 0.19 2.90 7.39 -2.91 -0.02 2.87 16 38 H 0.10 2.72 4.80 -2.91 -0.01 2.70 16 39 H 0.12 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 41 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 42 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 43 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.09 1.75 7.81 -2.38 -0.02 1.73 16 Total: -1.00 -81.47 385.05 7.16 -74.30 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 1.01 Total: 6.64 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 5.95 Total: 9.29 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -1.76 Total: -109.21 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.07 Total: -29.50 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -81.47 7.16 -74.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161082988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.979 kcal (2) G-P(sol) polarization free energy of solvation -81.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds