Wall clock time and date at job start Wed Apr 1 2020 00:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00408 * 2 1 4 4 C 1.52999 * 109.47509 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46913 * 64.99655 * 4 3 2 6 6 C 1.34777 * 120.00097 * 266.55914 * 5 4 3 7 7 C 1.50698 * 119.99719 * 5.19138 * 6 5 4 8 8 O 1.21283 * 120.00180 * 185.19039 * 6 5 4 9 9 C 1.38995 * 119.99767 * 86.56874 * 5 4 3 10 10 N 1.29632 * 124.94506 * 174.75620 * 9 5 4 11 11 C 1.31988 * 116.91892 * 179.97438 * 10 9 5 12 12 C 1.50701 * 122.71379 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.46973 * 275.02511 * 12 11 10 14 14 C 1.46898 * 111.00094 * 293.95468 * 13 12 11 15 15 C 1.46905 * 110.99981 * 169.99857 * 13 12 11 16 16 H 1.08994 * 109.47346 * 310.00627 * 15 13 12 17 17 C 1.53004 * 109.46688 * 70.00292 * 15 13 12 18 18 C 1.50694 * 109.47518 * 189.99797 * 15 13 12 19 19 H 1.08007 * 119.99463 * 0.02562 * 18 15 13 20 20 C 1.37875 * 120.00060 * 179.97438 * 18 15 13 21 21 N 1.31517 * 119.99749 * 180.02562 * 20 18 15 22 22 Si 1.86797 * 120.00170 * 0.02562 * 20 18 15 23 23 H 1.48491 * 109.47285 * 89.99656 * 22 20 18 24 24 H 1.48497 * 109.46810 * 209.99970 * 22 20 18 25 25 H 1.48503 * 109.46840 * 329.99415 * 22 20 18 26 26 C 1.33440 * 114.56794 * 0.23241 * 11 10 9 27 27 S 1.70975 * 124.94698 * 354.70880 * 9 5 4 28 28 H 1.09004 * 109.46954 * 59.99789 * 1 2 3 29 29 H 1.09002 * 109.47605 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47283 * 300.00392 * 1 2 3 31 31 H 1.08995 * 109.47082 * 59.99508 * 3 2 1 32 32 H 1.09007 * 109.46924 * 299.99744 * 3 2 1 33 33 H 1.08999 * 109.46617 * 305.00021 * 4 3 2 34 34 H 1.09000 * 109.47227 * 184.99879 * 4 3 2 35 35 H 1.08997 * 109.47205 * 84.65398 * 7 6 5 36 36 H 1.09008 * 109.46836 * 204.65223 * 7 6 5 37 37 H 1.09002 * 109.47400 * 324.64825 * 7 6 5 38 38 H 1.08999 * 109.46985 * 155.02686 * 12 11 10 39 39 H 1.08995 * 109.47243 * 35.02816 * 12 11 10 40 40 H 1.09000 * 109.47252 * 296.04739 * 14 13 12 41 41 H 1.08997 * 109.47453 * 56.04834 * 14 13 12 42 42 H 1.09008 * 109.46994 * 176.04712 * 14 13 12 43 43 H 1.09001 * 109.47024 * 299.99576 * 17 15 13 44 44 H 1.09003 * 109.46734 * 180.02562 * 17 15 13 45 45 H 1.09001 * 109.47528 * 59.99745 * 17 15 13 46 46 H 0.97001 * 120.00265 * 180.02562 * 21 20 18 47 47 H 1.07999 * 125.96808 * 179.76274 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5642 -1.2527 6 6 4.1615 -0.7692 -1.3153 7 6 3.8055 -1.6357 -0.1349 8 8 4.6154 -1.2717 -2.3215 9 6 4.2017 1.3509 -2.3761 10 7 4.6828 0.9197 -3.5000 11 6 4.8323 1.8070 -4.4656 12 6 5.3800 1.4488 -5.8232 13 7 6.8480 1.4856 -5.7842 14 6 7.3346 2.8535 -5.5608 15 6 7.4216 0.9165 -7.0110 16 1 6.9643 -0.0526 -7.2104 17 6 7.1512 1.8592 -8.1854 18 6 8.9086 0.7442 -6.8375 19 1 9.3803 1.0286 -5.9084 20 6 9.6666 0.2225 -7.8642 21 7 10.9643 0.0717 -7.7124 22 14 8.8506 -0.2701 -9.4707 23 1 8.8429 0.8897 -10.3979 24 1 9.6057 -1.3909 -10.0860 25 1 7.4545 -0.7008 -9.2050 26 6 4.4645 3.0479 -4.1408 27 16 3.8846 3.0280 -2.4773 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.8514 0.5681 0.8409 34 1 3.9786 2.1764 0.0889 35 1 2.7443 -1.8817 -0.1718 36 1 4.3926 -2.5536 -0.1678 37 1 4.0221 -1.0987 0.7886 38 1 5.0181 2.1645 -6.5613 39 1 5.0487 0.4469 -6.0958 40 1 7.0500 3.4827 -6.4042 41 1 6.8945 3.2509 -4.6463 42 1 8.4205 2.8419 -5.4663 43 1 6.0756 1.9838 -8.3110 44 1 7.5764 1.4367 -9.0958 45 1 7.6084 2.8284 -7.9861 46 1 11.4977 -0.2950 -8.4349 47 1 4.5120 3.9129 -4.7856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161768258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:55 Heat of formation + Delta-G solvation = 11.081027 kcal Electronic energy + Delta-G solvation = -28242.340769 eV Core-core repulsion = 24361.352885 eV Total energy + Delta-G solvation = -3880.987884 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.72346 -39.26566 -38.26370 -37.09256 -35.89975 -32.71699 -31.37243 -30.23946 -29.84636 -28.58633 -27.19195 -26.78396 -25.18416 -24.70405 -23.66487 -23.39593 -20.49864 -19.23382 -19.07255 -18.09038 -17.09639 -16.81452 -16.56074 -16.45987 -16.37998 -15.70106 -15.38651 -14.93529 -14.56909 -14.17059 -14.00493 -13.86599 -13.67332 -13.33623 -13.28121 -13.02129 -12.80631 -12.76331 -12.55055 -12.24499 -12.13394 -12.03675 -11.70982 -11.63737 -11.36927 -11.10924 -10.90817 -10.77218 -10.31304 -10.21485 -10.20836 -10.10770 -9.94510 -9.45687 -9.13593 -9.10744 -8.96271 -8.49701 -8.06215 -7.23378 -5.97568 -3.94707 0.86710 1.07351 1.72737 2.45812 2.57639 3.14612 3.24945 3.31707 3.43588 3.45398 4.24657 4.34493 4.44011 4.47797 4.66459 4.74498 4.88059 4.90564 4.92394 5.03292 5.08399 5.18875 5.24980 5.33128 5.37543 5.43972 5.59215 5.74968 5.84609 5.94906 6.07325 6.16478 6.25392 6.31409 6.34943 6.44452 6.58990 6.59357 6.77254 6.91782 6.94139 7.25982 7.72590 7.96430 8.00952 8.13840 8.21029 8.75476 9.11236 9.64611 11.15836 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.002812 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.653473 B = 9953.891431 C =10611.278803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.038 3.962 4 C 0.102 3.898 5 N -0.525 5.525 6 C 0.509 3.491 7 C -0.161 4.161 8 O -0.467 6.467 9 C 0.274 3.726 10 N -0.450 5.450 11 C 0.127 3.873 12 C 0.121 3.879 13 N -0.513 5.513 14 C 0.030 3.970 15 C 0.182 3.818 16 H 0.041 0.959 17 C -0.187 4.187 18 C -0.496 4.496 19 H 0.081 0.919 20 C 0.068 3.932 21 N -0.902 5.902 22 Si 0.886 3.114 23 H -0.281 1.281 24 H -0.297 1.297 25 H -0.267 1.267 26 C -0.276 4.276 27 S 0.080 5.920 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.019 0.981 41 H 0.045 0.955 42 H 0.078 0.922 43 H 0.028 0.972 44 H 0.045 0.955 45 H 0.058 0.942 46 H 0.263 0.737 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.359 6.438 19.627 31.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.040 4.040 4 C -0.020 4.020 5 N -0.257 5.257 6 C 0.295 3.705 7 C -0.221 4.221 8 O -0.334 6.334 9 C -0.094 4.094 10 N -0.170 5.170 11 C -0.005 4.005 12 C -0.010 4.010 13 N -0.236 5.236 14 C -0.118 4.118 15 C 0.075 3.925 16 H 0.059 0.941 17 C -0.246 4.246 18 C -0.534 4.534 19 H 0.099 0.901 20 C -0.133 4.133 21 N -0.540 5.540 22 Si 0.716 3.284 23 H -0.209 1.209 24 H -0.225 1.225 25 H -0.193 1.193 26 C -0.416 4.416 27 S 0.330 5.670 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.047 0.953 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -22.920 5.701 20.072 30.996 hybrid contribution -0.510 0.471 -2.373 2.473 sum -23.430 6.172 17.699 30.005 Atomic orbital electron populations 1.22757 0.80631 1.03036 1.00064 1.87892 1.20053 1.26991 1.95471 1.23053 0.93354 0.85934 1.01639 1.22042 0.93351 1.00753 0.85905 1.45299 1.65414 1.06820 1.08204 1.21192 0.77708 0.80940 0.90626 1.21968 1.05098 0.99626 0.95370 1.90914 1.38605 1.71469 1.32399 1.23755 1.01264 0.92861 0.91540 1.66357 1.16502 1.35566 0.98615 1.20164 0.96795 0.87232 0.96297 1.20644 0.90605 1.01710 0.88007 1.62080 1.02637 1.19956 1.38915 1.22345 1.02278 0.88989 0.98184 1.19807 0.96713 0.92892 0.83083 0.94105 1.22845 0.98040 1.02389 1.01303 1.20918 0.89093 1.41474 1.01960 0.90056 1.24904 0.94698 0.95336 0.98329 1.69883 1.05100 1.46001 1.33058 0.86891 0.79697 0.77468 0.84313 1.20851 1.22453 1.19251 1.26550 1.14872 1.02449 0.97734 1.83444 1.64506 1.06240 1.12814 0.94007 0.89415 0.93892 0.91175 0.92366 0.86952 0.87988 0.87604 0.88979 0.90108 0.93739 0.89520 0.96275 0.93574 0.90312 0.95326 0.93630 0.92329 0.92730 0.80681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.76 8.16 -35.23 -0.29 -3.04 16 3 C 0.04 0.22 6.27 37.16 0.23 0.46 16 4 C 0.10 0.70 5.33 -4.04 -0.02 0.68 16 5 N -0.53 -6.51 2.64 -117.39 -0.31 -6.82 16 6 C 0.51 7.27 7.54 -10.99 -0.08 7.19 16 7 C -0.16 -1.43 8.84 36.00 0.32 -1.11 16 8 O -0.47 -9.42 15.75 5.55 0.09 -9.34 16 9 C 0.27 4.16 7.66 -87.35 -0.67 3.49 16 10 N -0.45 -8.72 8.65 -11.28 -0.10 -8.82 16 11 C 0.13 2.27 5.58 -84.20 -0.47 1.80 16 12 C 0.12 2.35 4.98 -4.98 -0.02 2.33 16 13 N -0.51 -11.61 4.69 -237.73 -1.12 -12.73 16 14 C 0.03 0.61 8.56 60.06 0.51 1.13 16 15 C 0.18 4.58 1.90 -68.86 -0.13 4.45 16 16 H 0.04 1.08 6.99 -51.93 -0.36 0.72 16 17 C -0.19 -4.19 7.92 37.16 0.29 -3.90 16 18 C -0.50 -14.55 8.55 -34.44 -0.29 -14.85 16 19 H 0.08 2.62 7.35 -52.48 -0.39 2.23 16 20 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 21 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 22 Si 0.89 22.76 24.37 -169.99 -4.14 18.62 16 23 H -0.28 -6.99 6.87 56.52 0.39 -6.60 16 24 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 25 H -0.27 -6.64 6.53 56.52 0.37 -6.27 16 26 C -0.28 -3.91 9.74 29.05 0.28 -3.62 16 27 S 0.08 0.92 21.65 -107.50 -2.33 -1.41 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.40 7.94 -51.92 -0.41 -0.01 16 33 H 0.11 0.52 5.80 -51.93 -0.30 0.22 16 34 H 0.10 0.55 7.32 -51.93 -0.38 0.17 16 35 H 0.11 0.86 6.79 -51.93 -0.35 0.51 16 36 H 0.09 0.82 8.14 -51.92 -0.42 0.39 16 37 H 0.08 0.48 5.96 -51.93 -0.31 0.17 16 38 H 0.04 0.77 7.02 -51.93 -0.36 0.40 16 39 H 0.09 1.78 7.93 -51.93 -0.41 1.37 16 40 H 0.02 0.35 6.21 -51.93 -0.32 0.03 16 41 H 0.05 0.83 6.23 -51.93 -0.32 0.51 16 42 H 0.08 1.76 6.86 -51.92 -0.36 1.41 16 43 H 0.03 0.55 6.91 -51.93 -0.36 0.19 16 44 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 45 H 0.06 1.27 6.33 -51.93 -0.33 0.94 16 46 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 47 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 375.69 15.07 5.66 5.66 Total: -1.00 -38.25 375.69 -7.65 -45.90 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.86 Total: -1.61 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 0.97 Total: 1.25 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.75 Total: -56.04 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.20 Total: -12.38 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.14 Total: 18.62 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.33 Total: -1.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.25 -7.65 -45.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161768258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.983 kcal (2) G-P(sol) polarization free energy of solvation -38.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds