Wall clock time and date at job start Wed Apr 1 2020 00:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00408 * 2 1 4 4 C 1.52999 * 109.47509 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46913 * 64.99655 * 4 3 2 6 6 C 1.34777 * 120.00097 * 266.55914 * 5 4 3 7 7 C 1.50698 * 119.99719 * 5.19138 * 6 5 4 8 8 O 1.21283 * 120.00180 * 185.19039 * 6 5 4 9 9 C 1.38995 * 119.99767 * 86.56874 * 5 4 3 10 10 N 1.29632 * 124.94506 * 174.75620 * 9 5 4 11 11 C 1.31988 * 116.91892 * 179.97438 * 10 9 5 12 12 C 1.50701 * 122.71379 * 179.97438 * 11 10 9 13 13 N 1.46898 * 109.46973 * 275.02511 * 12 11 10 14 14 C 1.46898 * 111.00094 * 293.95468 * 13 12 11 15 15 C 1.46905 * 110.99981 * 169.99857 * 13 12 11 16 16 H 1.08994 * 109.47346 * 310.00627 * 15 13 12 17 17 C 1.53004 * 109.46688 * 70.00292 * 15 13 12 18 18 C 1.50694 * 109.47518 * 189.99797 * 15 13 12 19 19 H 1.08007 * 119.99463 * 0.02562 * 18 15 13 20 20 C 1.37875 * 120.00060 * 179.97438 * 18 15 13 21 21 N 1.31517 * 119.99749 * 180.02562 * 20 18 15 22 22 Si 1.86797 * 120.00170 * 0.02562 * 20 18 15 23 23 H 1.48491 * 109.47285 * 89.99656 * 22 20 18 24 24 H 1.48497 * 109.46810 * 209.99970 * 22 20 18 25 25 H 1.48503 * 109.46840 * 329.99415 * 22 20 18 26 26 C 1.33440 * 114.56794 * 0.23241 * 11 10 9 27 27 S 1.70975 * 124.94698 * 354.70880 * 9 5 4 28 28 H 1.09004 * 109.46954 * 59.99789 * 1 2 3 29 29 H 1.09002 * 109.47605 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47283 * 300.00392 * 1 2 3 31 31 H 1.08995 * 109.47082 * 59.99508 * 3 2 1 32 32 H 1.09007 * 109.46924 * 299.99744 * 3 2 1 33 33 H 1.08999 * 109.46617 * 305.00021 * 4 3 2 34 34 H 1.09000 * 109.47227 * 184.99879 * 4 3 2 35 35 H 1.08997 * 109.47205 * 84.65398 * 7 6 5 36 36 H 1.09008 * 109.46836 * 204.65223 * 7 6 5 37 37 H 1.09002 * 109.47400 * 324.64825 * 7 6 5 38 38 H 1.08999 * 109.46985 * 155.02686 * 12 11 10 39 39 H 1.08995 * 109.47243 * 35.02816 * 12 11 10 40 40 H 1.09000 * 109.47252 * 296.04739 * 14 13 12 41 41 H 1.08997 * 109.47453 * 56.04834 * 14 13 12 42 42 H 1.09008 * 109.46994 * 176.04712 * 14 13 12 43 43 H 1.09001 * 109.47024 * 299.99576 * 17 15 13 44 44 H 1.09003 * 109.46734 * 180.02562 * 17 15 13 45 45 H 1.09001 * 109.47528 * 59.99745 * 17 15 13 46 46 H 0.97001 * 120.00265 * 180.02562 * 21 20 18 47 47 H 1.07999 * 125.96808 * 179.76274 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5642 -1.2527 6 6 4.1615 -0.7692 -1.3153 7 6 3.8055 -1.6357 -0.1349 8 8 4.6154 -1.2717 -2.3215 9 6 4.2017 1.3509 -2.3761 10 7 4.6828 0.9197 -3.5000 11 6 4.8323 1.8070 -4.4656 12 6 5.3800 1.4488 -5.8232 13 7 6.8480 1.4856 -5.7842 14 6 7.3346 2.8535 -5.5608 15 6 7.4216 0.9165 -7.0110 16 1 6.9643 -0.0526 -7.2104 17 6 7.1512 1.8592 -8.1854 18 6 8.9086 0.7442 -6.8375 19 1 9.3803 1.0286 -5.9084 20 6 9.6666 0.2225 -7.8642 21 7 10.9643 0.0717 -7.7124 22 14 8.8506 -0.2701 -9.4707 23 1 8.8429 0.8897 -10.3979 24 1 9.6057 -1.3909 -10.0860 25 1 7.4545 -0.7008 -9.2050 26 6 4.4645 3.0479 -4.1408 27 16 3.8846 3.0280 -2.4773 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8463 0.8899 32 1 1.6887 1.8463 -0.8901 33 1 3.8514 0.5681 0.8409 34 1 3.9786 2.1764 0.0889 35 1 2.7443 -1.8817 -0.1718 36 1 4.3926 -2.5536 -0.1678 37 1 4.0221 -1.0987 0.7886 38 1 5.0181 2.1645 -6.5613 39 1 5.0487 0.4469 -6.0958 40 1 7.0500 3.4827 -6.4042 41 1 6.8945 3.2509 -4.6463 42 1 8.4205 2.8419 -5.4663 43 1 6.0756 1.9838 -8.3110 44 1 7.5764 1.4367 -9.0958 45 1 7.6084 2.8284 -7.9861 46 1 11.4977 -0.2950 -8.4349 47 1 4.5120 3.9129 -4.7856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161768258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:54 Heat of formation + Delta-G solvation = -18.901425 kcal Electronic energy + Delta-G solvation = -28243.640906 eV Core-core repulsion = 24361.352885 eV Total energy + Delta-G solvation = -3882.288020 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74979 -40.44657 -38.86090 -38.76146 -36.85765 -34.79012 -32.73685 -31.28862 -30.95035 -29.78204 -28.63503 -27.24652 -27.19000 -25.99172 -24.94917 -24.22794 -21.80066 -20.92401 -20.11269 -19.09522 -18.67629 -17.92713 -17.58329 -17.36844 -17.21017 -17.14183 -16.41065 -16.25185 -15.67591 -15.57617 -15.47268 -15.13942 -14.83699 -14.61250 -14.58340 -14.18215 -13.99458 -13.95818 -13.50669 -13.39662 -13.33516 -13.07963 -12.98218 -12.92480 -12.63221 -12.49653 -12.44007 -12.12054 -12.02116 -11.86052 -11.47913 -11.33207 -11.24158 -11.11187 -10.76733 -10.62191 -10.22923 -10.14979 -9.14887 -8.89102 -8.29126 -6.31573 -0.24088 0.05768 0.64356 1.26200 1.34637 1.44200 1.48124 1.63463 2.02009 2.30813 2.81263 3.04700 3.28262 3.41396 3.68770 3.88597 3.97172 4.20155 4.24732 4.32413 4.38927 4.41624 4.45659 4.49116 4.51213 4.53831 4.60317 4.61369 4.64208 4.66125 4.74327 4.78069 4.83194 4.93810 4.94646 4.99002 5.10707 5.18499 5.30107 5.40365 5.61557 5.97942 6.01002 6.20492 6.41035 6.66281 6.73381 6.91364 7.16233 7.32423 8.88282 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.002812 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.653473 B = 9953.891431 C =10611.278803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.039 3.961 4 C 0.090 3.910 5 N -0.524 5.524 6 C 0.501 3.499 7 C -0.148 4.148 8 O -0.543 6.543 9 C 0.243 3.757 10 N -0.514 5.514 11 C 0.091 3.909 12 C 0.128 3.872 13 N -0.541 5.541 14 C 0.041 3.959 15 C 0.187 3.813 16 H 0.022 0.978 17 C -0.179 4.179 18 C -0.501 4.501 19 H 0.033 0.967 20 C 0.010 3.990 21 N -0.950 5.950 22 Si 0.952 3.048 23 H -0.259 1.259 24 H -0.298 1.298 25 H -0.255 1.255 26 C -0.274 4.274 27 S 0.193 5.807 28 H 0.034 0.966 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.046 0.954 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.063 0.937 46 H 0.266 0.734 47 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.612 8.902 20.968 35.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.039 4.039 4 C -0.030 4.030 5 N -0.255 5.255 6 C 0.290 3.710 7 C -0.207 4.207 8 O -0.416 6.416 9 C -0.124 4.124 10 N -0.236 5.236 11 C -0.041 4.041 12 C -0.002 4.002 13 N -0.265 5.265 14 C -0.106 4.106 15 C 0.078 3.922 16 H 0.040 0.960 17 C -0.237 4.237 18 C -0.540 4.540 19 H 0.051 0.949 20 C -0.186 4.186 21 N -0.591 5.591 22 Si 0.779 3.221 23 H -0.185 1.185 24 H -0.226 1.226 25 H -0.179 1.179 26 C -0.415 4.415 27 S 0.444 5.556 28 H 0.053 0.947 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.065 0.935 33 H 0.156 0.844 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.135 0.865 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -26.229 8.226 21.487 34.890 hybrid contribution 0.440 -0.205 -2.544 2.590 sum -25.788 8.021 18.943 32.988 Atomic orbital electron populations 1.22855 0.79725 1.03525 1.00667 1.87855 1.21111 1.27861 1.95633 1.23120 0.92284 0.85729 1.02755 1.22548 0.94422 1.01891 0.84130 1.45638 1.64325 1.06485 1.09048 1.22199 0.76065 0.81908 0.90871 1.21978 1.05454 0.98847 0.94459 1.90878 1.42222 1.73082 1.35391 1.24218 1.01178 0.95503 0.91462 1.66276 1.18747 1.38103 1.00460 1.19898 0.99698 0.88673 0.95814 1.20531 0.88164 1.01107 0.90415 1.61880 1.05216 1.21478 1.37930 1.22216 1.00080 0.88275 1.00069 1.19547 0.93630 0.93301 0.85676 0.95969 1.22666 1.00411 1.01510 0.99117 1.21135 0.91724 1.41005 1.00125 0.94873 1.25781 0.95144 0.95283 1.02414 1.70041 1.06920 1.47539 1.34588 0.85809 0.78989 0.77681 0.79612 1.18489 1.22555 1.17916 1.26976 1.12501 1.01839 1.00174 1.82934 1.61744 1.01592 1.09376 0.94712 0.89148 0.91904 0.87559 0.93547 0.84413 0.86185 0.86514 0.89380 0.86502 0.91097 0.92095 0.94135 0.91445 0.93806 0.91797 0.94392 0.91825 0.92517 0.78086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -4.75 8.16 -148.98 -1.22 -5.97 16 3 C 0.04 0.32 6.27 71.98 0.45 0.77 16 4 C 0.09 0.94 5.33 86.38 0.46 1.40 16 5 N -0.52 -12.47 2.64 -643.71 -1.70 -14.17 16 6 C 0.50 14.53 7.54 87.66 0.66 15.19 16 7 C -0.15 -2.46 8.84 71.24 0.63 -1.83 16 8 O -0.54 -23.44 15.75 -3.04 -0.05 -23.48 16 9 C 0.24 7.21 7.66 179.20 1.37 8.59 16 10 N -0.51 -20.42 8.65 -189.59 -1.64 -22.06 16 11 C 0.09 3.23 5.58 41.45 0.23 3.46 16 12 C 0.13 4.98 4.98 85.56 0.43 5.41 16 13 N -0.54 -25.07 4.69 -906.05 -4.25 -29.33 16 14 C 0.04 1.67 8.56 127.69 1.09 2.77 16 15 C 0.19 9.54 1.90 44.17 0.08 9.62 16 16 H 0.02 1.21 6.99 -2.39 -0.02 1.20 16 17 C -0.18 -7.70 7.92 71.98 0.57 -7.13 16 18 C -0.50 -30.81 8.55 25.60 0.22 -30.59 16 19 H 0.03 2.29 7.35 -2.91 -0.02 2.27 16 20 C 0.01 0.64 5.45 84.65 0.46 1.10 16 21 N -0.95 -62.35 13.96 21.45 0.30 -62.05 16 22 Si 0.95 47.52 24.37 68.60 1.67 49.19 16 23 H -0.26 -11.97 6.87 99.48 0.68 -11.29 16 24 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 25 H -0.25 -12.11 6.53 99.48 0.65 -11.46 16 26 C -0.27 -7.06 9.74 66.73 0.65 -6.41 16 27 S 0.19 3.80 21.65 -56.49 -1.22 2.58 16 28 H 0.03 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.05 0.49 7.94 -2.38 -0.02 0.47 16 33 H 0.14 0.71 5.80 -2.39 -0.01 0.70 16 34 H 0.12 0.80 7.32 -2.39 -0.02 0.78 16 35 H 0.12 1.73 6.79 -2.39 -0.02 1.71 16 36 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.12 1.02 5.96 -2.39 -0.01 1.01 16 38 H 0.07 2.30 7.02 -2.39 -0.02 2.28 16 39 H 0.06 2.61 7.93 -2.39 -0.02 2.60 16 40 H 0.04 1.44 6.21 -2.39 -0.01 1.42 16 41 H 0.07 2.38 6.23 -2.39 -0.01 2.36 16 42 H 0.04 2.04 6.86 -2.38 -0.02 2.02 16 43 H 0.06 2.29 6.91 -2.39 -0.02 2.27 16 44 H 0.04 1.69 3.27 -2.39 -0.01 1.68 16 45 H 0.06 2.65 6.33 -2.39 -0.02 2.64 16 46 H 0.27 16.28 8.31 -92.71 -0.77 15.51 16 47 H 0.20 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -92.05 375.69 1.36 -90.69 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.91 Total: 10.76 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 8.56 Total: 3.83 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -7.29 Total: -127.61 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -1.26 Total: -29.45 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.67 Total: 49.19 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.22 Total: 2.58 kcal Total: -92.05 1.36 -90.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161768258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.792 kcal (2) G-P(sol) polarization free energy of solvation -92.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds