Wall clock time and date at job start Wed Apr 1 2020 00:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 114.00064 * 2 1 4 4 C 1.53004 * 109.46893 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47306 * 64.99620 * 4 3 2 6 6 C 1.34779 * 120.00371 * 266.56010 * 5 4 3 7 7 C 1.50701 * 119.99700 * 5.18634 * 6 5 4 8 8 O 1.21283 * 120.00145 * 185.18663 * 6 5 4 9 9 C 1.39009 * 119.99923 * 86.55874 * 5 4 3 10 10 N 1.29616 * 124.94457 * 174.75371 * 9 5 4 11 11 C 1.31990 * 116.91748 * 179.97438 * 10 9 5 12 12 C 1.50703 * 122.71462 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46989 * 275.02600 * 12 11 10 14 14 C 1.46895 * 111.00199 * 293.95320 * 13 12 11 15 15 C 1.46902 * 110.99765 * 169.99998 * 13 12 11 16 16 H 1.09000 * 109.46993 * 60.00064 * 15 13 12 17 17 C 1.52997 * 109.47262 * 300.00194 * 15 13 12 18 18 C 1.50699 * 109.47000 * 179.97438 * 15 13 12 19 19 H 1.07997 * 119.99933 * 0.02562 * 18 15 13 20 20 C 1.37875 * 119.99902 * 180.02562 * 18 15 13 21 21 N 1.31519 * 120.00373 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 119.99836 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.47178 * 89.99714 * 22 20 18 24 24 H 1.48504 * 109.47082 * 209.99897 * 22 20 18 25 25 H 1.48501 * 109.47117 * 329.99379 * 22 20 18 26 26 C 1.33443 * 114.56904 * 0.23964 * 11 10 9 27 27 S 1.70971 * 124.94333 * 354.72316 * 9 5 4 28 28 H 1.09005 * 109.46612 * 300.00005 * 1 2 3 29 29 H 1.08997 * 109.47053 * 59.99661 * 1 2 3 30 30 H 1.08999 * 109.47009 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47469 * 60.00257 * 3 2 1 32 32 H 1.09004 * 109.47154 * 299.99670 * 3 2 1 33 33 H 1.09005 * 109.46924 * 304.99740 * 4 3 2 34 34 H 1.09005 * 109.46818 * 185.00088 * 4 3 2 35 35 H 1.08997 * 109.46837 * 84.64837 * 7 6 5 36 36 H 1.08994 * 109.46866 * 204.65116 * 7 6 5 37 37 H 1.09004 * 109.47059 * 324.65253 * 7 6 5 38 38 H 1.09001 * 109.47105 * 155.02904 * 12 11 10 39 39 H 1.08998 * 109.47215 * 35.02755 * 12 11 10 40 40 H 1.09003 * 109.47278 * 296.04961 * 14 13 12 41 41 H 1.09006 * 109.47288 * 56.04466 * 14 13 12 42 42 H 1.08995 * 109.47597 * 176.04691 * 14 13 12 43 43 H 1.09000 * 109.47011 * 299.99860 * 17 15 13 44 44 H 1.08998 * 109.47263 * 60.00243 * 17 15 13 45 45 H 1.08999 * 109.47176 * 180.02562 * 17 15 13 46 46 H 0.96992 * 119.99959 * 180.02562 * 21 20 18 47 47 H 1.07999 * 125.96602 * 179.77125 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2526 6 6 4.1616 -0.7692 -1.3152 7 6 3.8056 -1.6358 -0.1348 8 8 4.6155 -1.2717 -2.3214 9 6 4.2017 1.3509 -2.3762 10 7 4.6828 0.9197 -3.4999 11 6 4.8323 1.8070 -4.4656 12 6 5.3800 1.4488 -5.8231 13 7 6.8480 1.4858 -5.7841 14 6 7.3344 2.8537 -5.5609 15 6 7.4217 0.9167 -7.0109 16 1 7.0803 1.4912 -7.8721 17 6 6.9713 -0.5381 -7.1574 18 6 8.9257 0.9723 -6.9349 19 1 9.4073 1.3883 -6.0623 20 6 9.6870 0.4920 -7.9793 21 7 9.1006 -0.0151 -9.0417 22 14 11.5514 0.5602 -7.8847 23 1 12.0616 -0.6891 -7.2649 24 1 12.1117 0.6987 -9.2530 25 1 11.9629 1.7253 -7.0611 26 6 4.4643 3.0479 -4.1408 27 16 3.8847 3.0279 -2.4773 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6888 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5681 0.8410 34 1 3.9786 2.1764 0.0889 35 1 2.7443 -1.8817 -0.1717 36 1 4.3926 -2.5536 -0.1677 37 1 4.0222 -1.0988 0.7887 38 1 5.0180 2.1644 -6.5613 39 1 5.0489 0.4467 -6.0957 40 1 7.0497 3.4828 -6.4043 41 1 6.8942 3.2512 -4.6463 42 1 8.4202 2.8424 -5.4663 43 1 7.3126 -1.1126 -6.2963 44 1 5.8834 -0.5779 -7.2127 45 1 7.3973 -0.9605 -8.0675 46 1 9.6362 -0.3533 -9.7762 47 1 4.5116 3.9128 -4.7858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161768391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:57 Heat of formation + Delta-G solvation = 2.705821 kcal Electronic energy + Delta-G solvation = -28231.235912 eV Core-core repulsion = 24349.884852 eV Total energy + Delta-G solvation = -3881.351060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68130 -39.17725 -38.23427 -36.67384 -35.82463 -32.81647 -31.20282 -30.21227 -29.37274 -28.57214 -27.25696 -26.76156 -24.93720 -24.23759 -23.62964 -23.06432 -20.47875 -19.32295 -19.03353 -18.03490 -17.05707 -16.77063 -16.48235 -16.35464 -16.17811 -15.64061 -15.21076 -14.83134 -14.32388 -14.25364 -13.93167 -13.72058 -13.64500 -13.33179 -13.20640 -12.85781 -12.75865 -12.47442 -12.32819 -12.22402 -12.02257 -11.73794 -11.62572 -11.41470 -11.00458 -10.93286 -10.63443 -10.48322 -10.22116 -10.18652 -10.09323 -9.98250 -9.93068 -9.74782 -9.07774 -9.05433 -8.77353 -8.33888 -7.99210 -7.05948 -5.92602 -3.96434 0.92819 1.12619 1.78710 2.49515 2.61220 3.19528 3.29143 3.37084 3.42857 3.46296 4.27876 4.36717 4.46584 4.48866 4.71124 4.76826 4.92074 4.93032 4.94673 5.10632 5.20424 5.24448 5.27169 5.39192 5.44792 5.46441 5.69932 5.77408 5.95094 6.08933 6.20482 6.30044 6.44726 6.52305 6.61597 6.84831 6.95708 7.00550 7.21915 7.27214 7.62946 7.83029 7.92176 8.01385 8.23360 8.33682 8.42032 8.68899 9.09546 9.67752 11.14322 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018834 B = 0.002739 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.354695 B =10220.211000 C =10806.952857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.038 3.962 4 C 0.103 3.897 5 N -0.525 5.525 6 C 0.509 3.491 7 C -0.161 4.161 8 O -0.466 6.466 9 C 0.272 3.728 10 N -0.449 5.449 11 C 0.129 3.871 12 C 0.119 3.881 13 N -0.527 5.527 14 C 0.036 3.964 15 C 0.215 3.785 16 H -0.001 1.001 17 C -0.133 4.133 18 C -0.500 4.500 19 H 0.063 0.937 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.275 1.275 26 C -0.276 4.276 27 S 0.076 5.924 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.094 0.906 40 H 0.011 0.989 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.036 0.964 44 H 0.009 0.991 45 H 0.084 0.916 46 H 0.260 0.740 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.838 5.580 22.166 29.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.040 4.040 4 C -0.020 4.020 5 N -0.257 5.257 6 C 0.295 3.705 7 C -0.221 4.221 8 O -0.334 6.334 9 C -0.096 4.096 10 N -0.169 5.169 11 C -0.003 4.003 12 C -0.012 4.012 13 N -0.252 5.252 14 C -0.112 4.112 15 C 0.109 3.891 16 H 0.016 0.984 17 C -0.191 4.191 18 C -0.538 4.538 19 H 0.081 0.919 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.207 1.207 24 H -0.214 1.214 25 H -0.200 1.200 26 C -0.416 4.416 27 S 0.325 5.675 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.058 0.942 39 H 0.112 0.888 40 H 0.030 0.970 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.028 0.972 45 H 0.103 0.897 46 H 0.069 0.931 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -18.513 4.834 22.491 29.529 hybrid contribution 0.783 0.714 -1.374 1.735 sum -17.730 5.548 21.117 28.126 Atomic orbital electron populations 1.22757 0.80632 1.03030 1.00066 1.87892 1.20054 1.26996 1.95473 1.23054 0.93367 0.85929 1.01636 1.22032 0.93353 1.00716 0.85914 1.45284 1.65455 1.06800 1.08204 1.21183 0.77766 0.80961 0.90611 1.21965 1.05104 0.99600 0.95381 1.90917 1.38625 1.71464 1.32358 1.23757 1.01426 0.92823 0.91567 1.66357 1.16407 1.35556 0.98566 1.20267 0.96467 0.87137 0.96414 1.20699 0.90826 1.02089 0.87561 1.62056 1.02639 1.19227 1.41258 1.22251 1.01928 0.89249 0.97788 1.19263 0.94241 0.91780 0.83788 0.98372 1.21845 0.95717 0.98780 1.02730 1.21144 0.90243 1.39730 1.02718 0.91926 1.24924 0.98622 0.95359 0.95363 1.69900 1.35031 1.41422 1.06974 0.86519 0.85559 0.78432 0.76999 1.20678 1.21383 1.20008 1.26564 1.14968 1.02517 0.97590 1.83410 1.64740 1.06332 1.13019 0.93919 0.93975 0.89419 0.91214 0.92334 0.87016 0.88022 0.87609 0.89031 0.90150 0.94245 0.88790 0.97048 0.93944 0.90635 0.94443 0.97239 0.89703 0.93055 0.80717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.86 8.16 -35.23 -0.29 -3.14 16 3 C 0.04 0.23 6.27 37.16 0.23 0.47 16 4 C 0.10 0.72 5.33 -4.04 -0.02 0.70 16 5 N -0.53 -6.66 2.64 -117.39 -0.31 -6.97 16 6 C 0.51 7.37 7.54 -10.98 -0.08 7.29 16 7 C -0.16 -1.45 8.84 36.01 0.32 -1.13 16 8 O -0.47 -9.53 15.75 5.55 0.09 -9.44 16 9 C 0.27 4.25 7.66 -87.35 -0.67 3.58 16 10 N -0.45 -8.94 8.65 -11.27 -0.10 -9.04 16 11 C 0.13 2.42 5.59 -84.20 -0.47 1.95 16 12 C 0.12 2.48 5.22 -4.97 -0.03 2.45 16 13 N -0.53 -12.53 4.61 -237.73 -1.10 -13.63 16 14 C 0.04 0.77 8.99 60.06 0.54 1.31 16 15 C 0.21 5.79 2.06 -68.87 -0.14 5.64 16 16 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 17 C -0.13 -3.55 8.77 37.16 0.33 -3.22 16 18 C -0.50 -14.38 7.93 -34.44 -0.27 -14.65 16 19 H 0.06 1.81 6.39 -52.49 -0.34 1.47 16 20 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 21 N -0.89 -26.41 11.32 55.43 0.63 -25.78 16 22 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 C -0.28 -4.14 9.74 29.06 0.28 -3.85 16 27 S 0.08 0.91 21.65 -107.50 -2.33 -1.42 16 28 H 0.04 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.42 7.94 -51.93 -0.41 0.01 16 33 H 0.11 0.53 5.80 -51.93 -0.30 0.23 16 34 H 0.10 0.57 7.32 -51.93 -0.38 0.19 16 35 H 0.11 0.88 6.79 -51.93 -0.35 0.53 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.48 5.96 -51.93 -0.31 0.18 16 38 H 0.04 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.09 2.10 5.83 -51.93 -0.30 1.79 16 40 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.04 0.80 6.23 -51.93 -0.32 0.47 16 42 H 0.08 1.70 6.23 -51.93 -0.32 1.38 16 43 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.01 0.22 6.20 -51.93 -0.32 -0.11 16 45 H 0.08 2.42 6.07 -51.93 -0.32 2.10 16 46 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.18 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -36.84 384.23 -8.64 -45.47 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -7.04 Total: -2.40 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 1.03 Total: 3.39 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.88 Total: -55.41 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.20 Total: -12.58 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.33 Total: -1.42 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.84 -8.64 -45.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161768391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.180 kcal (2) G-P(sol) polarization free energy of solvation -36.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds