Wall clock time and date at job start Wed Apr 1 2020 00:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42897 * 114.00064 * 2 1 4 4 C 1.53004 * 109.46893 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47306 * 64.99620 * 4 3 2 6 6 C 1.34779 * 120.00371 * 266.56010 * 5 4 3 7 7 C 1.50701 * 119.99700 * 5.18634 * 6 5 4 8 8 O 1.21283 * 120.00145 * 185.18663 * 6 5 4 9 9 C 1.39009 * 119.99923 * 86.55874 * 5 4 3 10 10 N 1.29616 * 124.94457 * 174.75371 * 9 5 4 11 11 C 1.31990 * 116.91748 * 179.97438 * 10 9 5 12 12 C 1.50703 * 122.71462 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.46989 * 275.02600 * 12 11 10 14 14 C 1.46895 * 111.00199 * 293.95320 * 13 12 11 15 15 C 1.46902 * 110.99765 * 169.99998 * 13 12 11 16 16 H 1.09000 * 109.46993 * 60.00064 * 15 13 12 17 17 C 1.52997 * 109.47262 * 300.00194 * 15 13 12 18 18 C 1.50699 * 109.47000 * 179.97438 * 15 13 12 19 19 H 1.07997 * 119.99933 * 0.02562 * 18 15 13 20 20 C 1.37875 * 119.99902 * 180.02562 * 18 15 13 21 21 N 1.31519 * 120.00373 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 119.99836 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.47178 * 89.99714 * 22 20 18 24 24 H 1.48504 * 109.47082 * 209.99897 * 22 20 18 25 25 H 1.48501 * 109.47117 * 329.99379 * 22 20 18 26 26 C 1.33443 * 114.56904 * 0.23964 * 11 10 9 27 27 S 1.70971 * 124.94333 * 354.72316 * 9 5 4 28 28 H 1.09005 * 109.46612 * 300.00005 * 1 2 3 29 29 H 1.08997 * 109.47053 * 59.99661 * 1 2 3 30 30 H 1.08999 * 109.47009 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47469 * 60.00257 * 3 2 1 32 32 H 1.09004 * 109.47154 * 299.99670 * 3 2 1 33 33 H 1.09005 * 109.46924 * 304.99740 * 4 3 2 34 34 H 1.09005 * 109.46818 * 185.00088 * 4 3 2 35 35 H 1.08997 * 109.46837 * 84.64837 * 7 6 5 36 36 H 1.08994 * 109.46866 * 204.65116 * 7 6 5 37 37 H 1.09004 * 109.47059 * 324.65253 * 7 6 5 38 38 H 1.09001 * 109.47105 * 155.02904 * 12 11 10 39 39 H 1.08998 * 109.47215 * 35.02755 * 12 11 10 40 40 H 1.09003 * 109.47278 * 296.04961 * 14 13 12 41 41 H 1.09006 * 109.47288 * 56.04466 * 14 13 12 42 42 H 1.08995 * 109.47597 * 176.04691 * 14 13 12 43 43 H 1.09000 * 109.47011 * 299.99860 * 17 15 13 44 44 H 1.08998 * 109.47263 * 60.00243 * 17 15 13 45 45 H 1.08999 * 109.47176 * 180.02562 * 17 15 13 46 46 H 0.96992 * 119.99959 * 180.02562 * 21 20 18 47 47 H 1.07999 * 125.96602 * 179.77125 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2526 6 6 4.1616 -0.7692 -1.3152 7 6 3.8056 -1.6358 -0.1348 8 8 4.6155 -1.2717 -2.3214 9 6 4.2017 1.3509 -2.3762 10 7 4.6828 0.9197 -3.4999 11 6 4.8323 1.8070 -4.4656 12 6 5.3800 1.4488 -5.8231 13 7 6.8480 1.4858 -5.7841 14 6 7.3344 2.8537 -5.5609 15 6 7.4217 0.9167 -7.0109 16 1 7.0803 1.4912 -7.8721 17 6 6.9713 -0.5381 -7.1574 18 6 8.9257 0.9723 -6.9349 19 1 9.4073 1.3883 -6.0623 20 6 9.6870 0.4920 -7.9793 21 7 9.1006 -0.0151 -9.0417 22 14 11.5514 0.5602 -7.8847 23 1 12.0616 -0.6891 -7.2649 24 1 12.1117 0.6987 -9.2530 25 1 11.9629 1.7253 -7.0611 26 6 4.4643 3.0479 -4.1408 27 16 3.8847 3.0279 -2.4773 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6888 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5681 0.8410 34 1 3.9786 2.1764 0.0889 35 1 2.7443 -1.8817 -0.1717 36 1 4.3926 -2.5536 -0.1677 37 1 4.0222 -1.0988 0.7887 38 1 5.0180 2.1644 -6.5613 39 1 5.0489 0.4467 -6.0957 40 1 7.0497 3.4828 -6.4043 41 1 6.8942 3.2512 -4.6463 42 1 8.4202 2.8424 -5.4663 43 1 7.3126 -1.1126 -6.2963 44 1 5.8834 -0.5779 -7.2127 45 1 7.3973 -0.9605 -8.0675 46 1 9.6362 -0.3533 -9.7762 47 1 4.5116 3.9128 -4.7858 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161768391.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:56 Heat of formation + Delta-G solvation = -23.937141 kcal Electronic energy + Delta-G solvation = -28232.391238 eV Core-core repulsion = 24349.884852 eV Total energy + Delta-G solvation = -3882.506385 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.74148 -40.39819 -38.85025 -38.44855 -36.83638 -34.86674 -32.41258 -31.06463 -30.94115 -29.95760 -28.82732 -27.19542 -26.86789 -25.66728 -24.77666 -24.21978 -21.91422 -21.04093 -20.10938 -19.07268 -18.36614 -17.93202 -17.57757 -17.34477 -17.16019 -17.03331 -16.27870 -16.06142 -15.76028 -15.71076 -15.44348 -14.93212 -14.88689 -14.58244 -14.31102 -14.07407 -13.92965 -13.59974 -13.46161 -13.36708 -13.00707 -12.98742 -12.90819 -12.81791 -12.62070 -12.58504 -12.26398 -12.14210 -12.10707 -11.99410 -11.64348 -11.34102 -11.23024 -10.93744 -10.61880 -10.54000 -10.22259 -10.13925 -9.13879 -8.91013 -8.12719 -6.24884 -0.24004 0.05892 0.63259 1.39444 1.41987 1.48810 1.52057 1.63764 2.02827 2.41656 2.81845 3.14884 3.29788 3.49901 3.69629 3.89589 3.97886 4.22274 4.25633 4.33352 4.45671 4.46702 4.49814 4.52024 4.60084 4.61498 4.64528 4.68436 4.70779 4.82092 4.87707 4.94187 4.94585 4.99975 5.03578 5.11847 5.21542 5.30575 5.43765 5.69201 5.72466 5.98944 6.20708 6.20912 6.38282 6.67579 6.88371 6.92213 7.16950 7.43591 8.93755 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018834 B = 0.002739 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.354695 B =10220.211000 C =10806.952857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.038 3.962 4 C 0.090 3.910 5 N -0.523 5.523 6 C 0.500 3.500 7 C -0.148 4.148 8 O -0.542 6.542 9 C 0.245 3.755 10 N -0.511 5.511 11 C 0.095 3.905 12 C 0.125 3.875 13 N -0.543 5.543 14 C 0.045 3.955 15 C 0.221 3.779 16 H -0.028 1.028 17 C -0.118 4.118 18 C -0.519 4.519 19 H 0.057 0.943 20 C 0.010 3.990 21 N -0.921 5.921 22 Si 0.964 3.036 23 H -0.279 1.279 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.278 4.278 27 S 0.196 5.804 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.017 0.983 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.018 0.982 44 H 0.023 0.977 45 H 0.065 0.935 46 H 0.263 0.737 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.734 7.905 25.498 33.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.324 6.324 3 C -0.040 4.040 4 C -0.030 4.030 5 N -0.254 5.254 6 C 0.289 3.711 7 C -0.207 4.207 8 O -0.415 6.415 9 C -0.122 4.122 10 N -0.233 5.233 11 C -0.036 4.036 12 C -0.005 4.005 13 N -0.268 5.268 14 C -0.103 4.103 15 C 0.115 3.885 16 H -0.010 1.010 17 C -0.176 4.176 18 C -0.557 4.557 19 H 0.075 0.925 20 C -0.188 4.188 21 N -0.560 5.560 22 Si 0.789 3.211 23 H -0.205 1.205 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.419 4.419 27 S 0.447 5.553 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.064 0.936 33 H 0.157 0.843 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.107 0.893 37 H 0.136 0.864 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.036 0.964 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.042 0.958 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -19.457 7.209 25.898 33.185 hybrid contribution 0.906 0.073 -2.288 2.462 sum -18.551 7.283 23.609 30.896 Atomic orbital electron populations 1.22855 0.79745 1.03525 1.00649 1.87855 1.21092 1.27865 1.95632 1.23130 0.92376 0.85727 1.02733 1.22554 0.94346 1.01937 0.84124 1.45648 1.64340 1.06480 1.08977 1.22213 0.76092 0.81882 0.90887 1.21976 1.05426 0.98846 0.94444 1.90885 1.42199 1.73051 1.35354 1.24221 1.01078 0.95475 0.91465 1.66262 1.18810 1.37871 1.00355 1.19840 0.99492 0.88679 0.95638 1.20527 0.88922 1.00906 0.90176 1.61944 1.04781 1.20837 1.39251 1.22173 1.00818 0.88118 0.99190 1.19024 0.93853 0.91286 0.84373 1.01046 1.21651 0.96502 0.98798 1.00649 1.21380 0.91358 1.40205 1.02790 0.92473 1.25754 1.03424 0.94772 0.94893 1.70021 1.36781 1.41723 1.07518 0.85471 0.79691 0.78552 0.77391 1.20503 1.20434 1.19077 1.26947 1.12762 1.01776 1.00380 1.82868 1.61842 1.01638 1.08996 0.91871 0.94780 0.89140 0.87520 0.93646 0.84292 0.86140 0.86602 0.89328 0.86438 0.92989 0.91654 0.96421 0.91359 0.92441 0.96319 0.95774 0.91633 0.92823 0.78555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -4.88 8.16 -148.98 -1.22 -6.10 16 3 C 0.04 0.32 6.27 71.98 0.45 0.77 16 4 C 0.09 0.95 5.33 86.38 0.46 1.41 16 5 N -0.52 -12.55 2.64 -643.71 -1.70 -14.25 16 6 C 0.50 14.55 7.54 87.66 0.66 15.21 16 7 C -0.15 -2.43 8.84 71.24 0.63 -1.80 16 8 O -0.54 -23.48 15.75 -3.04 -0.05 -23.53 16 9 C 0.24 7.42 7.66 179.20 1.37 8.79 16 10 N -0.51 -20.90 8.65 -189.58 -1.64 -22.55 16 11 C 0.10 3.62 5.59 41.45 0.23 3.85 16 12 C 0.13 5.43 5.22 85.56 0.45 5.87 16 13 N -0.54 -26.76 4.61 -906.05 -4.18 -30.94 16 14 C 0.05 1.92 8.99 127.69 1.15 3.07 16 15 C 0.22 12.46 2.06 44.17 0.09 12.56 16 16 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 17 C -0.12 -6.68 8.77 71.98 0.63 -6.05 16 18 C -0.52 -30.77 7.93 25.60 0.20 -30.57 16 19 H 0.06 3.38 6.39 -2.91 -0.02 3.36 16 20 C 0.01 0.59 5.30 84.65 0.45 1.04 16 21 N -0.92 -55.79 11.32 21.45 0.24 -55.55 16 22 Si 0.96 46.06 29.54 68.60 2.03 48.08 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 C -0.28 -7.79 9.74 66.73 0.65 -7.14 16 27 S 0.20 4.05 21.65 -56.49 -1.22 2.83 16 28 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 29 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.05 0.51 7.94 -2.38 -0.02 0.49 16 33 H 0.14 0.68 5.80 -2.38 -0.01 0.67 16 34 H 0.12 0.80 7.32 -2.38 -0.02 0.78 16 35 H 0.12 1.73 6.79 -2.39 -0.02 1.71 16 36 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.12 0.99 5.96 -2.38 -0.01 0.98 16 38 H 0.05 2.05 8.08 -2.39 -0.02 2.04 16 39 H 0.07 3.13 5.83 -2.39 -0.01 3.12 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.07 2.51 6.23 -2.38 -0.01 2.49 16 42 H 0.06 2.62 6.23 -2.39 -0.01 2.61 16 43 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.02 1.24 6.20 -2.39 -0.01 1.22 16 45 H 0.06 3.93 6.07 -2.39 -0.01 3.92 16 46 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 47 H 0.20 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -86.68 384.23 1.91 -84.77 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.98 Total: 8.75 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 8.67 Total: 8.49 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -7.28 Total: -123.29 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -1.26 Total: -29.63 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.22 Total: 2.83 kcal Total: -86.68 1.91 -84.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161768391.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.831 kcal (2) G-P(sol) polarization free energy of solvation -86.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds