Wall clock time and date at job start Wed Apr 1 2020 01:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47314 * 2 1 4 4 C 1.46497 * 119.99844 * 270.00290 * 3 2 1 5 5 C 1.50702 * 109.47018 * 269.99788 * 4 3 2 6 6 H 1.08004 * 119.99673 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00132 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99981 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99968 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46701 * 90.00185 * 9 7 5 11 11 H 1.48502 * 109.47268 * 209.99670 * 9 7 5 12 12 H 1.48498 * 109.47187 * 330.00276 * 9 7 5 13 13 C 1.34772 * 119.99891 * 89.99936 * 3 2 1 14 14 O 1.21287 * 119.99615 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00362 * 0.02562 * 13 3 2 16 16 N 1.46497 * 109.47185 * 179.97438 * 15 13 3 17 17 N 1.40591 * 127.45636 * 270.16223 * 16 15 13 18 18 N 1.28849 * 106.98078 * 180.26973 * 17 16 15 19 19 N 1.28394 * 110.62567 * 359.74356 * 18 17 16 20 20 C 1.32014 * 110.46599 * 0.02562 * 19 18 17 21 21 C 1.46845 * 126.58122 * 180.02562 * 20 19 18 22 22 C 1.34497 * 120.00589 * 6.75227 * 21 20 19 23 23 C 1.47316 * 119.99692 * 9.98559 * 22 21 20 24 24 C 1.39778 * 120.16264 * 44.18936 * 23 22 21 25 25 C 1.37916 * 119.82982 * 179.97438 * 24 23 22 26 26 C 1.38387 * 120.16714 * 0.02562 * 25 24 23 27 27 C 1.38393 * 120.33144 * 359.97438 * 26 25 24 28 28 C 1.37904 * 120.16588 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46607 * 299.99753 * 1 2 3 30 30 H 1.08997 * 109.46786 * 59.99680 * 1 2 3 31 31 H 1.08997 * 109.46821 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47042 * 239.99617 * 2 1 3 33 33 H 1.09003 * 109.47203 * 119.99789 * 2 1 3 34 34 H 1.09000 * 109.47574 * 29.99225 * 4 3 2 35 35 H 1.08998 * 109.47524 * 149.99857 * 4 3 2 36 36 H 0.97002 * 120.00000 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47032 * 60.00059 * 15 13 3 38 38 H 1.09003 * 109.47155 * 299.99780 * 15 13 3 39 39 H 1.08004 * 120.00070 * 186.75900 * 21 20 19 40 40 H 1.08000 * 120.00708 * 189.98537 * 22 21 20 41 41 H 1.07995 * 120.08719 * 359.96031 * 24 23 22 42 42 H 1.08004 * 119.91620 * 180.02562 * 25 24 23 43 43 H 1.07995 * 119.83305 * 179.71928 * 26 25 24 44 44 H 1.07999 * 119.91787 * 179.97438 * 27 26 25 45 45 H 1.08004 * 120.08581 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0961 7 6 4.1494 2.3904 -2.8775 8 7 5.3917 2.1841 -3.2569 9 14 3.0131 3.4358 -3.9287 10 1 3.1159 4.8559 -3.5068 11 1 3.4068 3.3137 -5.3554 12 1 1.6136 2.9692 -3.7596 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1601 1.1671 15 6 1.9924 1.3060 2.4723 16 7 2.3103 2.2034 3.5858 17 7 3.5487 2.3573 4.2331 18 7 3.3839 3.2419 5.1553 19 7 2.1737 3.6706 5.1597 20 6 1.4687 3.0725 4.2174 21 6 0.0501 3.2960 3.9108 22 6 -0.6251 4.2802 4.5308 23 6 0.0996 5.2698 5.3467 24 6 1.2864 5.8365 4.8733 25 6 1.9590 6.7627 5.6426 26 6 1.4619 7.1310 6.8805 27 6 0.2874 6.5743 7.3558 28 6 -0.3962 5.6469 6.5980 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 5.7180 2.5751 -4.0824 37 1 2.6230 0.4187 2.5299 38 1 0.9445 1.0115 2.5303 39 1 -0.4512 2.6700 3.1874 40 1 -1.6985 4.3451 4.4306 41 1 1.6759 5.5496 3.9077 42 1 2.8760 7.2018 5.2780 43 1 1.9953 7.8534 7.4804 44 1 -0.0942 6.8662 8.3230 45 1 -1.3129 5.2135 6.9700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255173220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:46 Heat of formation + Delta-G solvation = 147.386188 kcal Electronic energy + Delta-G solvation = -29408.203064 eV Core-core repulsion = 25429.974615 eV Total energy + Delta-G solvation = -3978.228449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.73712 -39.54923 -39.14460 -35.85224 -35.41663 -34.63108 -32.82763 -31.62129 -30.74945 -30.62195 -29.77315 -29.16343 -27.32925 -24.42393 -23.56106 -23.25196 -22.61098 -22.10227 -21.97708 -19.65661 -18.92027 -17.67697 -17.20674 -16.97448 -16.78828 -15.95612 -15.79202 -15.37670 -15.18736 -15.09402 -14.49265 -14.21458 -14.07376 -13.80832 -13.68115 -13.38478 -13.27082 -12.95275 -12.70614 -12.58376 -12.45614 -12.21145 -12.07597 -11.90971 -11.61512 -11.31691 -11.17068 -11.15203 -11.03829 -10.96271 -10.80208 -10.71453 -10.62531 -10.29011 -9.67252 -9.54746 -9.30284 -8.75586 -8.68902 -8.18183 -8.02988 -6.18130 -4.18656 0.33116 1.30947 1.50135 1.81827 2.04861 2.78289 2.84768 3.20466 3.25873 3.28670 3.45605 3.86727 3.96073 4.20797 4.29843 4.41663 4.48919 4.70626 4.75223 4.90562 4.99074 5.03049 5.12983 5.14404 5.25354 5.27920 5.38718 5.43252 5.47716 5.56864 5.61690 5.70124 5.79439 5.90101 5.92946 6.03489 6.09284 6.14676 6.24112 6.47678 6.49856 6.55837 6.63210 6.74473 7.03193 7.04247 7.47187 7.87652 8.31652 8.55407 8.63330 8.84510 9.40411 10.95060 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.003020 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.987799 B = 9269.197101 C = 9777.259931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.099 3.901 3 N -0.583 5.583 4 C 0.219 3.781 5 C -0.535 4.535 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.893 5.893 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.494 3.506 14 O -0.519 6.519 15 C 0.101 3.899 16 N -0.358 5.358 17 N -0.070 5.070 18 N -0.050 5.050 19 N -0.313 5.313 20 C 0.281 3.719 21 C -0.120 4.120 22 C -0.022 4.022 23 C -0.081 4.081 24 C -0.036 4.036 25 C -0.122 4.122 26 C -0.104 4.104 27 C -0.136 4.136 28 C -0.094 4.094 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.037 0.963 36 H 0.266 0.734 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.654 -0.284 16.262 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.025 4.025 3 N -0.315 5.315 4 C 0.098 3.902 5 C -0.573 4.573 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.531 5.531 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.191 1.191 13 C 0.277 3.723 14 O -0.395 6.395 15 C -0.025 4.025 16 N -0.154 5.154 17 N -0.055 5.055 18 N -0.044 5.044 19 N -0.165 5.165 20 C 0.007 3.993 21 C -0.141 4.141 22 C -0.045 4.045 23 C -0.081 4.081 24 C -0.055 4.055 25 C -0.141 4.141 26 C -0.122 4.122 27 C -0.154 4.154 28 C -0.113 4.113 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.009 0.543 16.799 23.212 hybrid contribution -0.884 -0.072 -1.533 1.771 sum -16.892 0.471 15.267 22.774 Atomic orbital electron populations 1.22255 0.96291 1.02067 1.02342 1.21590 0.93700 0.83459 1.03770 1.47930 1.63495 1.13496 1.06585 1.19720 0.97696 0.93325 0.79411 1.21275 0.95187 1.33440 1.07388 0.90681 1.24854 0.95003 0.95692 0.97325 1.69892 1.15068 1.44599 1.23557 0.86864 0.81320 0.81641 0.79926 1.19885 1.20909 1.19056 1.20130 0.79883 0.87410 0.84833 1.90773 1.44536 1.17662 1.86513 1.21993 1.04584 0.92669 0.83301 1.51476 1.07807 1.30391 1.25695 1.82542 1.00114 1.16991 1.05827 1.77903 1.10313 1.04515 1.11691 1.75213 0.98654 1.22550 1.20072 1.23964 0.94677 0.89427 0.91204 1.20960 0.86698 1.02751 1.03682 1.22337 0.99316 0.91069 0.91763 1.18809 0.96008 0.98040 0.95282 1.21056 0.92095 0.93192 0.99149 1.20949 0.99787 0.98418 0.94905 1.21172 0.95951 0.99339 0.95729 1.20916 0.96279 0.98385 0.99816 1.21086 0.99476 0.97104 0.93587 0.93163 0.91796 0.91465 0.88897 0.91338 0.94788 0.94531 0.92400 0.84917 0.85537 0.83658 0.83748 0.87103 0.86374 0.86497 0.86411 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.24 37.16 0.38 -1.20 16 2 C 0.10 1.23 5.93 -4.04 -0.02 1.20 16 3 N -0.58 -10.47 2.46 -175.06 -0.43 -10.90 16 4 C 0.22 4.95 4.23 -5.19 -0.02 4.93 16 5 C -0.53 -14.78 9.94 -34.44 -0.34 -15.12 16 6 H 0.08 2.30 8.06 -52.48 -0.42 1.87 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -27.15 13.96 55.43 0.77 -26.37 16 9 Si 0.88 20.92 27.47 -169.99 -4.67 16.26 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -5.86 6.54 56.52 0.37 -5.49 16 13 C 0.49 9.01 7.74 -10.99 -0.09 8.92 16 14 O -0.52 -12.24 16.01 5.55 0.09 -12.15 16 15 C 0.10 1.29 5.42 -5.20 -0.03 1.26 16 16 N -0.36 -5.58 3.21 -60.05 -0.19 -5.78 16 17 N -0.07 -1.29 13.92 60.35 0.84 -0.45 16 18 N -0.05 -0.92 13.36 60.35 0.81 -0.11 16 19 N -0.31 -5.14 7.64 32.27 0.25 -4.90 16 20 C 0.28 4.08 6.80 -154.61 -1.05 3.03 16 21 C -0.12 -1.24 9.73 -37.42 -0.36 -1.60 16 22 C -0.02 -0.20 9.80 -37.21 -0.36 -0.56 16 23 C -0.08 -0.93 4.67 -105.06 -0.49 -1.42 16 24 C -0.04 -0.49 6.40 -39.12 -0.25 -0.75 16 25 C -0.12 -1.57 10.03 -39.64 -0.40 -1.97 16 26 C -0.10 -1.14 10.04 -39.47 -0.40 -1.53 16 27 C -0.14 -1.35 10.03 -39.65 -0.40 -1.75 16 28 C -0.09 -0.94 9.79 -39.13 -0.38 -1.32 16 29 H 0.05 0.38 7.22 -51.93 -0.38 0.01 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 1.26 8.07 -51.93 -0.42 0.84 16 33 H 0.07 0.65 6.44 -51.93 -0.33 0.32 16 34 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 35 H 0.04 0.90 6.85 -51.93 -0.36 0.54 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.13 1.45 7.40 -51.93 -0.38 1.06 16 38 H 0.13 1.01 6.61 -51.93 -0.34 0.67 16 39 H 0.15 1.05 7.60 -52.48 -0.40 0.65 16 40 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.11 1.78 6.98 -52.49 -0.37 1.42 16 42 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -37.36 382.29 -6.99 -44.35 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.90 Total: 0.16 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -4.31 Total: -5.87 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 2.04 Total: -48.50 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.36 -6.99 -44.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255173220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.732 kcal (2) G-P(sol) polarization free energy of solvation -37.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds