Wall clock time and date at job start Wed Apr 1 2020 01:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47314 * 2 1 4 4 C 1.46497 * 119.99844 * 270.00290 * 3 2 1 5 5 C 1.50702 * 109.47018 * 269.99788 * 4 3 2 6 6 H 1.08004 * 119.99673 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00132 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99981 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99968 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46701 * 90.00185 * 9 7 5 11 11 H 1.48502 * 109.47268 * 209.99670 * 9 7 5 12 12 H 1.48498 * 109.47187 * 330.00276 * 9 7 5 13 13 C 1.34772 * 119.99891 * 89.99936 * 3 2 1 14 14 O 1.21287 * 119.99615 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00362 * 0.02562 * 13 3 2 16 16 N 1.46497 * 109.47185 * 179.97438 * 15 13 3 17 17 N 1.40591 * 127.45636 * 270.16223 * 16 15 13 18 18 N 1.28849 * 106.98078 * 180.26973 * 17 16 15 19 19 N 1.28394 * 110.62567 * 359.74356 * 18 17 16 20 20 C 1.32014 * 110.46599 * 0.02562 * 19 18 17 21 21 C 1.46845 * 126.58122 * 180.02562 * 20 19 18 22 22 C 1.34497 * 120.00589 * 6.75227 * 21 20 19 23 23 C 1.47316 * 119.99692 * 9.98559 * 22 21 20 24 24 C 1.39778 * 120.16264 * 44.18936 * 23 22 21 25 25 C 1.37916 * 119.82982 * 179.97438 * 24 23 22 26 26 C 1.38387 * 120.16714 * 0.02562 * 25 24 23 27 27 C 1.38393 * 120.33144 * 359.97438 * 26 25 24 28 28 C 1.37904 * 120.16588 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46607 * 299.99753 * 1 2 3 30 30 H 1.08997 * 109.46786 * 59.99680 * 1 2 3 31 31 H 1.08997 * 109.46821 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47042 * 239.99617 * 2 1 3 33 33 H 1.09003 * 109.47203 * 119.99789 * 2 1 3 34 34 H 1.09000 * 109.47574 * 29.99225 * 4 3 2 35 35 H 1.08998 * 109.47524 * 149.99857 * 4 3 2 36 36 H 0.97002 * 120.00000 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.47032 * 60.00059 * 15 13 3 38 38 H 1.09003 * 109.47155 * 299.99780 * 15 13 3 39 39 H 1.08004 * 120.00070 * 186.75900 * 21 20 19 40 40 H 1.08000 * 120.00708 * 189.98537 * 22 21 20 41 41 H 1.07995 * 120.08719 * 359.96031 * 24 23 22 42 42 H 1.08004 * 119.91620 * 180.02562 * 25 24 23 43 43 H 1.07995 * 119.83305 * 179.71928 * 26 25 24 44 44 H 1.07999 * 119.91787 * 179.97438 * 27 26 25 45 45 H 1.08004 * 120.08581 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0961 7 6 4.1494 2.3904 -2.8775 8 7 5.3917 2.1841 -3.2569 9 14 3.0131 3.4358 -3.9287 10 1 3.1159 4.8559 -3.5068 11 1 3.4068 3.3137 -5.3554 12 1 1.6136 2.9692 -3.7596 13 6 2.2431 2.0165 1.1672 14 8 2.6469 3.1601 1.1671 15 6 1.9924 1.3060 2.4723 16 7 2.3103 2.2034 3.5858 17 7 3.5487 2.3573 4.2331 18 7 3.3839 3.2419 5.1553 19 7 2.1737 3.6706 5.1597 20 6 1.4687 3.0725 4.2174 21 6 0.0501 3.2960 3.9108 22 6 -0.6251 4.2802 4.5308 23 6 0.0996 5.2698 5.3467 24 6 1.2864 5.8365 4.8733 25 6 1.9590 6.7627 5.6426 26 6 1.4619 7.1310 6.8805 27 6 0.2874 6.5743 7.3558 28 6 -0.3962 5.6469 6.5980 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.5818 1.6876 -2.0284 35 1 2.0956 3.1410 -1.1385 36 1 5.7180 2.5751 -4.0824 37 1 2.6230 0.4187 2.5299 38 1 0.9445 1.0115 2.5303 39 1 -0.4512 2.6700 3.1874 40 1 -1.6985 4.3451 4.4306 41 1 1.6759 5.5496 3.9077 42 1 2.8760 7.2018 5.2780 43 1 1.9953 7.8534 7.4804 44 1 -0.0942 6.8662 8.3230 45 1 -1.3129 5.2135 6.9700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255173220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:46 Heat of formation + Delta-G solvation = 121.981496 kcal Electronic energy + Delta-G solvation = -29409.304694 eV Core-core repulsion = 25429.974615 eV Total energy + Delta-G solvation = -3979.330079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.91238 -40.97224 -39.99376 -37.24804 -36.43194 -35.71779 -34.86630 -32.67974 -31.99783 -31.64196 -30.84930 -30.22425 -28.89205 -25.45184 -24.94737 -24.35620 -23.87193 -23.15841 -23.03328 -20.66304 -20.18518 -19.17842 -18.78594 -18.33096 -17.82366 -17.06534 -16.95007 -16.74646 -16.53074 -16.02572 -15.87957 -15.30793 -15.12926 -14.98416 -14.73608 -14.56188 -14.37835 -14.24790 -13.94250 -13.81191 -13.53355 -13.45481 -13.25405 -13.12474 -13.00105 -12.62560 -12.46485 -12.32963 -12.08781 -12.02985 -11.97174 -11.91528 -11.87892 -11.83811 -11.78014 -10.88055 -10.79802 -10.44465 -9.63696 -9.56507 -9.06427 -8.38384 -6.44377 -0.60951 0.27393 0.59399 0.78002 1.07540 1.28603 1.33586 1.41170 1.47837 1.78450 2.14400 2.26656 2.96357 2.97786 3.06091 3.21505 3.31344 3.64217 3.81282 3.89815 4.05777 4.14568 4.15471 4.29516 4.31419 4.37729 4.41580 4.58256 4.61953 4.62970 4.75623 4.78242 4.83595 4.98703 5.02007 5.05773 5.09243 5.17714 5.20752 5.38415 5.40600 5.47073 5.53646 5.64102 5.70594 5.76239 6.16054 6.19830 6.49548 6.58480 7.09252 7.23142 7.41368 8.78766 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013899 B = 0.003020 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.987799 B = 9269.197101 C = 9777.259931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.087 3.913 3 N -0.586 5.586 4 C 0.228 3.772 5 C -0.539 4.539 6 H 0.026 0.974 7 C 0.009 3.991 8 N -0.947 5.947 9 Si 0.947 3.053 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.229 1.229 13 C 0.487 3.513 14 O -0.586 6.586 15 C 0.108 3.892 16 N -0.363 5.363 17 N -0.111 5.111 18 N -0.073 5.073 19 N -0.328 5.328 20 C 0.286 3.714 21 C -0.141 4.141 22 C 0.000 4.000 23 C -0.094 4.094 24 C -0.059 4.059 25 C -0.147 4.147 26 C -0.111 4.111 27 C -0.135 4.135 28 C -0.090 4.090 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.017 0.983 36 H 0.268 0.732 37 H 0.154 0.846 38 H 0.188 0.812 39 H 0.186 0.814 40 H 0.196 0.804 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.134 0.866 44 H 0.149 0.851 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.167 -1.302 17.479 29.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.034 4.034 3 N -0.317 5.317 4 C 0.106 3.894 5 C -0.577 4.577 6 H 0.045 0.955 7 C -0.189 4.189 8 N -0.587 5.587 9 Si 0.770 3.230 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.152 1.152 13 C 0.273 3.727 14 O -0.467 6.467 15 C -0.016 4.016 16 N -0.160 5.160 17 N -0.096 5.096 18 N -0.068 5.068 19 N -0.180 5.180 20 C 0.014 3.986 21 C -0.162 4.162 22 C -0.023 4.023 23 C -0.095 4.095 24 C -0.078 4.078 25 C -0.166 4.166 26 C -0.129 4.129 27 C -0.153 4.153 28 C -0.108 4.108 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.077 0.923 37 H 0.171 0.829 38 H 0.205 0.795 39 H 0.203 0.797 40 H 0.213 0.787 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.152 0.848 44 H 0.166 0.834 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.556 -0.551 18.028 28.107 hybrid contribution 0.851 0.281 -1.819 2.028 sum -20.705 -0.270 16.209 26.296 Atomic orbital electron populations 1.22206 0.92860 1.04193 1.02847 1.22011 0.96452 0.80253 1.04721 1.47998 1.63174 1.15423 1.05076 1.19326 0.94742 0.93012 0.82348 1.21581 0.97298 1.32166 1.06675 0.95525 1.25898 0.96716 0.97210 0.99113 1.70063 1.17572 1.46532 1.24527 0.85726 0.80832 0.78696 0.77754 1.20761 1.20080 1.15152 1.21051 0.78268 0.86815 0.86522 1.90750 1.47426 1.20807 1.87668 1.22282 1.08561 0.91538 0.79241 1.51571 1.07057 1.31216 1.26118 1.82424 1.02201 1.18049 1.06959 1.77849 1.11655 1.04931 1.12350 1.75165 0.98264 1.23013 1.21585 1.24826 0.96100 0.87796 0.89908 1.21504 0.84323 1.04815 1.05547 1.22857 1.01362 0.88904 0.89153 1.19141 0.95280 0.98515 0.96516 1.20881 0.93908 0.94902 0.98146 1.21019 0.99932 0.99320 0.96295 1.21421 0.96765 0.99780 0.94932 1.21354 0.95428 0.97621 1.00914 1.21524 1.00369 0.96339 0.92534 0.90696 0.93316 0.88458 0.90634 0.87953 0.92368 0.96510 0.92296 0.82854 0.79479 0.79684 0.78727 0.90823 0.87710 0.84761 0.83359 0.82586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 10.24 71.98 0.74 -1.48 16 2 C 0.09 1.93 5.93 86.38 0.51 2.44 16 3 N -0.59 -20.48 2.46 -826.15 -2.03 -22.51 16 4 C 0.23 10.33 4.23 85.63 0.36 10.69 16 5 C -0.54 -30.99 9.94 25.60 0.25 -30.74 16 6 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 7 C 0.01 0.50 5.47 84.65 0.46 0.97 16 8 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 9 Si 0.95 43.64 27.47 68.60 1.88 45.53 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.23 -9.09 6.54 99.48 0.65 -8.44 16 13 C 0.49 17.54 7.74 87.66 0.68 18.22 16 14 O -0.59 -28.73 16.01 -3.05 -0.05 -28.78 16 15 C 0.11 2.51 5.42 85.63 0.46 2.97 16 16 N -0.36 -11.16 3.21 -343.89 -1.10 -12.27 16 17 N -0.11 -4.29 13.92 37.02 0.52 -3.77 16 18 N -0.07 -2.84 13.36 37.02 0.49 -2.35 16 19 N -0.33 -11.04 7.64 -51.82 -0.40 -11.44 16 20 C 0.29 8.08 6.80 136.06 0.92 9.01 16 21 C -0.14 -2.43 9.73 23.67 0.23 -2.20 16 22 C 0.00 0.00 9.80 23.80 0.23 0.23 16 23 C -0.09 -1.99 4.67 -20.15 -0.09 -2.08 16 24 C -0.06 -1.70 6.40 22.57 0.14 -1.55 16 25 C -0.15 -4.04 10.03 22.23 0.22 -3.82 16 26 C -0.11 -2.37 10.04 22.34 0.22 -2.15 16 27 C -0.14 -2.33 10.03 22.23 0.22 -2.11 16 28 C -0.09 -1.48 9.79 22.56 0.22 -1.26 16 29 H 0.07 0.67 7.22 -2.39 -0.02 0.65 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.95 8.07 -2.39 -0.02 1.93 16 33 H 0.10 1.56 6.44 -2.39 -0.02 1.55 16 34 H 0.06 2.36 7.13 -2.39 -0.02 2.34 16 35 H 0.02 0.83 6.85 -2.39 -0.02 0.82 16 36 H 0.27 15.86 8.31 -92.71 -0.77 15.08 16 37 H 0.15 2.93 7.40 -2.39 -0.02 2.92 16 38 H 0.19 1.94 6.61 -2.39 -0.02 1.92 16 39 H 0.19 1.60 7.60 -2.91 -0.02 1.58 16 40 H 0.20 0.80 8.06 -2.91 -0.02 0.78 16 41 H 0.07 2.60 6.98 -2.91 -0.02 2.58 16 42 H 0.10 2.95 8.06 -2.91 -0.02 2.93 16 43 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 44 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 45 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -93.63 382.29 6.37 -87.26 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.95 Total: 11.07 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 5.80 Total: -2.87 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -2.22 Total: -112.20 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.05 Total: -28.78 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.53 kcal Total: -93.63 6.37 -87.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255173220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.238 kcal (2) G-P(sol) polarization free energy of solvation -93.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds