Wall clock time and date at job start Wed Apr 1 2020 00:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47235 * 2 1 4 4 N 1.46504 * 109.46985 * 119.99833 * 2 1 3 5 5 C 1.34777 * 119.99766 * 274.99848 * 4 2 1 6 6 O 1.21577 * 120.00283 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99980 * 179.97438 * 5 4 2 8 8 C 1.39235 * 120.00063 * 183.29222 * 7 5 4 9 9 C 1.39481 * 119.83838 * 322.13708 * 8 7 5 10 10 C 1.36376 * 120.16808 * 179.76069 * 9 8 7 11 11 C 1.40861 * 119.83125 * 0.53033 * 10 9 8 12 12 C 1.41155 * 120.16825 * 179.69935 * 11 10 9 13 13 H 1.07996 * 120.00728 * 158.01794 * 12 11 10 14 14 C 1.39902 * 119.99665 * 338.02076 * 12 11 10 15 15 N 1.30886 * 119.99784 * 327.57899 * 14 12 11 16 16 Si 1.86792 * 120.00009 * 147.58119 * 14 12 11 17 17 H 1.48506 * 109.47317 * 94.98543 * 16 14 12 18 18 H 1.48502 * 109.47149 * 214.98570 * 16 14 12 19 19 H 1.48497 * 109.47335 * 334.98377 * 16 14 12 20 20 C 1.40870 * 119.67095 * 359.72175 * 11 10 9 21 21 C 1.36371 * 119.82920 * 359.97438 * 20 11 10 22 22 C 1.50697 * 109.47625 * 239.99651 * 2 1 3 23 23 N 1.30503 * 126.37374 * 285.02791 * 22 2 1 24 24 N 1.28575 * 109.66735 * 179.97438 * 23 22 2 25 25 C 1.30672 * 109.63668 * 359.95506 * 24 23 22 26 26 N 1.35175 * 107.33312 * 359.87851 * 25 24 23 27 27 C 1.46800 * 111.15183 * 180.02562 * 26 25 24 28 28 C 1.54427 * 105.55333 * 17.22717 * 27 26 25 29 29 C 1.51337 * 142.72214 * 180.25160 * 25 24 23 30 30 H 1.09003 * 109.47403 * 60.00040 * 1 2 3 31 31 H 1.09004 * 109.47235 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47701 * 300.00472 * 1 2 3 33 33 H 0.96989 * 120.00147 * 95.00303 * 4 2 1 34 34 H 0.97002 * 119.99393 * 3.29686 * 7 5 4 35 35 H 1.08003 * 119.91333 * 359.97438 * 9 8 7 36 36 H 1.07996 * 120.08104 * 180.23048 * 10 9 8 37 37 H 0.96993 * 119.99658 * 179.97438 * 15 14 12 38 38 H 1.08001 * 120.08648 * 179.97438 * 20 11 10 39 39 H 1.08007 * 119.91547 * 179.97438 * 21 20 11 40 40 H 1.09002 * 110.22747 * 136.24803 * 27 26 25 41 41 H 1.09002 * 110.23189 * 258.20632 * 27 26 25 42 42 H 1.09006 * 110.95961 * 92.50370 * 28 27 26 43 43 H 1.08999 * 110.96186 * 216.20668 * 28 27 26 44 44 H 1.08997 * 110.47791 * 282.15539 * 29 25 24 45 45 H 1.09007 * 110.46910 * 44.76535 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8574 1.1614 2.4118 7 7 2.5957 -0.6536 3.4578 8 6 2.6638 0.0227 4.6730 9 6 3.0504 1.3626 4.7008 10 6 3.1147 2.0328 5.8868 11 6 2.8002 1.3655 7.0867 12 6 2.8705 2.0506 8.3189 13 1 2.3135 1.6889 9.1705 14 6 3.6618 3.1983 8.4369 15 7 4.7630 3.3085 7.7382 16 14 3.1466 4.5733 9.5915 17 1 3.8257 4.4007 10.9009 18 1 3.5293 5.8824 9.0042 19 1 1.6753 4.5299 9.7875 20 6 2.4157 0.0108 7.0511 21 6 2.3500 -0.6446 5.8570 22 6 2.0324 -0.7104 -1.2304 23 7 2.0335 -1.9996 -1.4334 24 7 2.5340 -2.2550 -2.5899 25 6 2.8741 -1.1385 -3.1776 26 7 2.5629 -0.1287 -2.3345 27 6 2.9121 1.1733 -2.9159 28 6 3.0909 0.9169 -4.4282 29 6 3.4775 -0.5821 -4.4490 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2489 -1.6316 1.1527 34 1 2.8712 -1.5820 3.4033 35 1 3.2962 1.8715 3.7804 36 1 3.4106 3.0713 5.9063 37 1 5.3114 4.1044 7.8197 38 1 2.1735 -0.5076 7.9672 39 1 2.0557 -1.6834 5.8281 40 1 2.1075 1.8892 -2.7474 41 1 3.8423 1.5420 -2.4835 42 1 2.1593 1.0926 -4.9663 43 1 3.8954 1.5295 -4.8351 44 1 4.5604 -0.7062 -4.4433 45 1 3.0417 -1.0679 -5.3221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264474736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:28 Heat of formation + Delta-G solvation = 84.945761 kcal Electronic energy + Delta-G solvation = -28377.545885 eV Core-core repulsion = 24396.609817 eV Total energy + Delta-G solvation = -3980.936069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.73839 -39.94499 -37.79045 -37.48737 -35.74282 -34.33010 -33.10586 -32.55136 -30.81694 -29.72875 -29.43406 -28.71356 -27.90775 -25.07391 -24.08231 -23.01885 -21.72910 -21.40458 -21.16433 -20.41780 -19.93085 -18.17602 -17.56282 -17.31713 -16.86227 -16.25467 -15.56353 -15.31689 -15.15150 -14.79639 -14.69751 -14.08247 -13.98345 -13.94541 -13.73208 -13.62630 -13.25813 -12.86634 -12.66216 -12.29538 -12.26996 -12.04508 -12.00749 -11.94648 -11.76547 -11.57008 -11.26979 -11.13296 -11.07720 -10.65136 -10.61737 -10.44571 -10.10271 -9.66827 -9.52836 -9.35542 -9.07399 -8.96546 -8.84723 -7.48825 -7.11012 -6.80740 -4.23315 1.40946 1.98403 2.51062 2.71236 3.03877 3.07738 3.09539 3.13456 3.21682 3.25191 3.66869 3.76362 3.92273 3.92641 4.07865 4.19767 4.55552 4.64735 4.69106 4.77308 4.79931 4.97170 5.01548 5.09596 5.21604 5.27331 5.39234 5.61364 5.70361 5.76422 5.83376 6.08984 6.20862 6.40493 6.43787 6.52818 6.84315 6.87888 7.04925 7.12531 7.31940 7.33338 7.64046 7.89037 8.00554 8.08330 8.27806 8.42714 8.51275 8.62340 8.88306 8.94275 9.13581 10.06974 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021470 B = 0.002077 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.818286 B =13477.219324 C =14140.832789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.258 3.742 3 H 0.101 0.899 4 N -0.743 5.743 5 C 0.699 3.301 6 O -0.579 6.579 7 N -0.662 5.662 8 C -0.001 4.001 9 C -0.074 4.074 10 C -0.173 4.173 11 C 0.111 3.889 12 C -0.467 4.467 13 H 0.081 0.919 14 C 0.088 3.912 15 N -0.769 5.769 16 Si 0.895 3.105 17 H -0.270 1.270 18 H -0.274 1.274 19 H -0.258 1.258 20 C -0.221 4.221 21 C -0.096 4.096 22 C 0.192 3.808 23 N -0.276 5.276 24 N -0.279 5.279 25 C 0.155 3.845 26 N -0.487 5.487 27 C 0.098 3.902 28 C -0.128 4.128 29 C -0.040 4.040 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.402 0.598 34 H 0.391 0.609 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.283 0.717 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 -2.577 -23.470 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.149 3.851 3 H 0.119 0.881 4 N -0.401 5.401 5 C 0.400 3.600 6 O -0.457 6.457 7 N -0.307 5.307 8 C -0.093 4.093 9 C -0.094 4.094 10 C -0.193 4.193 11 C 0.108 3.892 12 C -0.495 4.495 13 H 0.099 0.901 14 C -0.134 4.134 15 N -0.392 5.392 16 Si 0.719 3.281 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.181 1.181 20 C -0.241 4.241 21 C -0.117 4.117 22 C -0.075 4.075 23 N -0.117 5.117 24 N -0.120 5.120 25 C -0.113 4.113 26 N -0.179 5.179 27 C -0.024 4.024 28 C -0.166 4.166 29 C -0.079 4.079 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.236 0.764 34 H 0.225 0.775 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.871 -2.746 -23.083 23.321 hybrid contribution 0.349 1.054 0.254 1.138 sum -1.523 -1.692 -22.829 22.943 Atomic orbital electron populations 1.22182 0.92968 1.03385 1.03068 1.18710 0.94354 0.94851 0.77209 0.88077 1.45026 1.73014 1.13923 1.08108 1.15927 0.78656 0.85320 0.80132 1.90908 1.56843 1.13969 1.83936 1.42018 1.66823 1.14686 1.07219 1.16860 1.16122 0.93950 0.82362 1.20398 0.98395 0.93126 0.97494 1.20699 1.07945 0.99391 0.91247 1.17588 0.88233 0.90334 0.93036 1.19472 1.24520 1.07993 0.97487 0.90091 1.25934 0.92844 0.99051 0.95572 1.69956 1.07770 1.26990 1.34459 0.86523 0.80955 0.80239 0.80418 1.19531 1.19919 1.18117 1.20454 1.13343 0.94926 0.95410 1.20047 1.01575 0.97786 0.92264 1.24558 1.01284 0.90607 0.91071 1.74374 1.17860 1.09921 1.09510 1.74003 1.14779 1.21588 1.01586 1.26006 1.03147 0.85783 0.96387 1.47170 1.45469 1.10788 1.14516 1.22519 1.03301 0.82476 0.94152 1.22866 1.04381 0.95703 0.93687 1.20719 1.01532 0.94017 0.91671 0.92018 0.91347 0.90100 0.76367 0.77543 0.88029 0.87652 0.90651 0.88670 0.89225 0.88194 0.88311 0.89033 0.87565 0.87838 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.47 37.15 0.35 -1.47 16 2 C 0.26 3.26 3.12 -69.09 -0.22 3.05 16 3 H 0.10 1.33 7.58 -51.93 -0.39 0.94 16 4 N -0.74 -10.53 5.07 -59.82 -0.30 -10.83 16 5 C 0.70 12.77 8.34 -86.91 -0.72 12.04 16 6 O -0.58 -12.69 13.63 5.30 0.07 -12.62 16 7 N -0.66 -12.20 5.30 -14.10 -0.07 -12.28 16 8 C 0.00 -0.01 6.25 -83.57 -0.52 -0.54 16 9 C -0.07 -1.87 8.59 -39.79 -0.34 -2.21 16 10 C -0.17 -4.66 8.74 -39.26 -0.34 -5.00 16 11 C 0.11 3.00 5.57 -106.80 -0.60 2.40 16 12 C -0.47 -12.45 8.94 -37.85 -0.34 -12.78 16 13 H 0.08 2.07 8.02 -52.49 -0.42 1.65 16 14 C 0.09 2.21 4.77 -17.33 -0.08 2.12 16 15 N -0.77 -19.91 11.78 55.55 0.65 -19.25 16 16 Si 0.90 18.53 29.66 -169.99 -5.04 13.49 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 20 C -0.22 -5.46 9.74 -39.26 -0.38 -5.84 16 21 C -0.10 -2.16 9.90 -39.79 -0.39 -2.56 16 22 C 0.19 2.37 7.09 -154.89 -1.10 1.28 16 23 N -0.28 -3.97 11.92 32.81 0.39 -3.58 16 24 N -0.28 -3.90 12.22 32.93 0.40 -3.49 16 25 C 0.15 1.58 8.69 -154.84 -1.35 0.24 16 26 N -0.49 -4.78 3.62 -109.38 -0.40 -5.18 16 27 C 0.10 0.51 7.77 -3.13 -0.02 0.48 16 28 C -0.13 -0.31 7.18 -25.02 -0.18 -0.49 16 29 C -0.04 -0.18 6.86 -26.61 -0.18 -0.37 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.40 5.15 8.38 -40.82 -0.34 4.80 16 34 H 0.39 5.85 8.84 -40.82 -0.36 5.48 16 35 H 0.10 2.57 6.46 -52.48 -0.34 2.23 16 36 H 0.11 2.91 6.52 -52.49 -0.34 2.57 16 37 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 38 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 40 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.11 0.02 8.14 -51.93 -0.42 -0.41 16 44 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -34.44 379.03 -10.99 -45.43 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -5.98 Total: 12.24 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -6.42 Total: -9.65 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.67 Total: -54.61 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.07 Total: -12.62 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.04 Total: 13.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.44 -10.99 -45.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264474736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.375 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds