Wall clock time and date at job start Wed Apr 1 2020 00:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47235 * 2 1 4 4 N 1.46504 * 109.46985 * 119.99833 * 2 1 3 5 5 C 1.34777 * 119.99766 * 274.99848 * 4 2 1 6 6 O 1.21577 * 120.00283 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99980 * 179.97438 * 5 4 2 8 8 C 1.39235 * 120.00063 * 183.29222 * 7 5 4 9 9 C 1.39481 * 119.83838 * 322.13708 * 8 7 5 10 10 C 1.36376 * 120.16808 * 179.76069 * 9 8 7 11 11 C 1.40861 * 119.83125 * 0.53033 * 10 9 8 12 12 C 1.41155 * 120.16825 * 179.69935 * 11 10 9 13 13 H 1.07996 * 120.00728 * 158.01794 * 12 11 10 14 14 C 1.39902 * 119.99665 * 338.02076 * 12 11 10 15 15 N 1.30886 * 119.99784 * 327.57899 * 14 12 11 16 16 Si 1.86792 * 120.00009 * 147.58119 * 14 12 11 17 17 H 1.48506 * 109.47317 * 94.98543 * 16 14 12 18 18 H 1.48502 * 109.47149 * 214.98570 * 16 14 12 19 19 H 1.48497 * 109.47335 * 334.98377 * 16 14 12 20 20 C 1.40870 * 119.67095 * 359.72175 * 11 10 9 21 21 C 1.36371 * 119.82920 * 359.97438 * 20 11 10 22 22 C 1.50697 * 109.47625 * 239.99651 * 2 1 3 23 23 N 1.30503 * 126.37374 * 285.02791 * 22 2 1 24 24 N 1.28575 * 109.66735 * 179.97438 * 23 22 2 25 25 C 1.30672 * 109.63668 * 359.95506 * 24 23 22 26 26 N 1.35175 * 107.33312 * 359.87851 * 25 24 23 27 27 C 1.46800 * 111.15183 * 180.02562 * 26 25 24 28 28 C 1.54427 * 105.55333 * 17.22717 * 27 26 25 29 29 C 1.51337 * 142.72214 * 180.25160 * 25 24 23 30 30 H 1.09003 * 109.47403 * 60.00040 * 1 2 3 31 31 H 1.09004 * 109.47235 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47701 * 300.00472 * 1 2 3 33 33 H 0.96989 * 120.00147 * 95.00303 * 4 2 1 34 34 H 0.97002 * 119.99393 * 3.29686 * 7 5 4 35 35 H 1.08003 * 119.91333 * 359.97438 * 9 8 7 36 36 H 1.07996 * 120.08104 * 180.23048 * 10 9 8 37 37 H 0.96993 * 119.99658 * 179.97438 * 15 14 12 38 38 H 1.08001 * 120.08648 * 179.97438 * 20 11 10 39 39 H 1.08007 * 119.91547 * 179.97438 * 21 20 11 40 40 H 1.09002 * 110.22747 * 136.24803 * 27 26 25 41 41 H 1.09002 * 110.23189 * 258.20632 * 27 26 25 42 42 H 1.09006 * 110.95961 * 92.50370 * 28 27 26 43 43 H 1.08999 * 110.96186 * 216.20668 * 28 27 26 44 44 H 1.08997 * 110.47791 * 282.15539 * 29 25 24 45 45 H 1.09007 * 110.46910 * 44.76535 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8574 1.1614 2.4118 7 7 2.5957 -0.6536 3.4578 8 6 2.6638 0.0227 4.6730 9 6 3.0504 1.3626 4.7008 10 6 3.1147 2.0328 5.8868 11 6 2.8002 1.3655 7.0867 12 6 2.8705 2.0506 8.3189 13 1 2.3135 1.6889 9.1705 14 6 3.6618 3.1983 8.4369 15 7 4.7630 3.3085 7.7382 16 14 3.1466 4.5733 9.5915 17 1 3.8257 4.4007 10.9009 18 1 3.5293 5.8824 9.0042 19 1 1.6753 4.5299 9.7875 20 6 2.4157 0.0108 7.0511 21 6 2.3500 -0.6446 5.8570 22 6 2.0324 -0.7104 -1.2304 23 7 2.0335 -1.9996 -1.4334 24 7 2.5340 -2.2550 -2.5899 25 6 2.8741 -1.1385 -3.1776 26 7 2.5629 -0.1287 -2.3345 27 6 2.9121 1.1733 -2.9159 28 6 3.0909 0.9169 -4.4282 29 6 3.4775 -0.5821 -4.4490 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2489 -1.6316 1.1527 34 1 2.8712 -1.5820 3.4033 35 1 3.2962 1.8715 3.7804 36 1 3.4106 3.0713 5.9063 37 1 5.3114 4.1044 7.8197 38 1 2.1735 -0.5076 7.9672 39 1 2.0557 -1.6834 5.8281 40 1 2.1075 1.8892 -2.7474 41 1 3.8423 1.5420 -2.4835 42 1 2.1593 1.0926 -4.9663 43 1 3.8954 1.5295 -4.8351 44 1 4.5604 -0.7062 -4.4433 45 1 3.0417 -1.0679 -5.3221 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264474736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:27 Heat of formation + Delta-G solvation = 63.413350 kcal Electronic energy + Delta-G solvation = -28378.479601 eV Core-core repulsion = 24396.609817 eV Total energy + Delta-G solvation = -3981.869784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.54270 -41.46764 -39.34999 -38.28028 -37.06260 -36.05232 -34.84251 -33.43007 -31.92218 -31.36775 -30.65613 -30.29214 -28.52447 -26.81716 -25.20278 -23.65939 -23.20442 -22.90259 -22.24728 -21.58885 -21.29282 -19.58080 -19.24197 -18.49998 -18.02784 -17.14831 -17.08974 -16.70190 -16.36933 -15.97687 -15.79717 -15.67013 -15.17092 -14.88744 -14.61543 -14.46262 -14.34844 -14.19592 -13.99523 -13.93123 -13.80731 -13.26576 -13.13167 -12.97649 -12.76320 -12.75812 -12.55311 -12.50384 -12.35393 -12.25387 -11.87495 -11.51656 -11.48354 -11.24492 -11.09233 -10.88296 -10.68444 -10.37789 -10.16780 -9.44193 -8.99319 -8.67428 -6.21157 0.58083 0.88433 1.16148 1.24551 1.37191 1.45793 1.56020 1.62266 1.84411 2.14263 2.19970 2.63830 2.68256 3.07516 3.28704 3.42519 3.67836 3.73661 3.83786 3.93858 4.01060 4.32073 4.39039 4.44065 4.46532 4.48670 4.52299 4.71109 4.77162 4.81617 4.94602 4.97672 5.06153 5.07994 5.10228 5.14990 5.17858 5.27668 5.32145 5.45357 5.62629 5.72615 5.77083 6.08154 6.11169 6.16154 6.35883 6.66686 6.91370 7.02499 7.05865 7.54950 7.60788 8.22250 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021470 B = 0.002077 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.818286 B =13477.219324 C =14140.832789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.260 3.740 3 H 0.096 0.904 4 N -0.725 5.725 5 C 0.701 3.299 6 O -0.616 6.616 7 N -0.656 5.656 8 C 0.011 3.989 9 C -0.085 4.085 10 C -0.197 4.197 11 C 0.080 3.920 12 C -0.503 4.503 13 H 0.082 0.918 14 C 0.047 3.953 15 N -0.803 5.803 16 Si 0.971 3.029 17 H -0.256 1.256 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.232 4.232 21 C -0.091 4.091 22 C 0.181 3.819 23 N -0.305 5.305 24 N -0.329 5.329 25 C 0.161 3.839 26 N -0.488 5.488 27 C 0.082 3.918 28 C -0.111 4.111 29 C -0.040 4.040 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.411 0.589 34 H 0.411 0.589 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.292 0.708 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.138 0.862 44 H 0.120 0.880 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.600 -2.425 -25.316 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.152 3.848 3 H 0.114 0.886 4 N -0.383 5.383 5 C 0.402 3.598 6 O -0.496 6.496 7 N -0.303 5.303 8 C -0.082 4.082 9 C -0.106 4.106 10 C -0.217 4.217 11 C 0.078 3.922 12 C -0.531 4.531 13 H 0.100 0.900 14 C -0.172 4.172 15 N -0.427 5.427 16 Si 0.791 3.209 17 H -0.181 1.181 18 H -0.191 1.191 19 H -0.183 1.183 20 C -0.252 4.252 21 C -0.112 4.112 22 C -0.087 4.087 23 N -0.145 5.145 24 N -0.169 5.169 25 C -0.108 4.108 26 N -0.179 5.179 27 C -0.038 4.038 28 C -0.149 4.149 29 C -0.080 4.080 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.247 0.753 34 H 0.248 0.752 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.126 0.874 39 H 0.148 0.852 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.156 0.844 44 H 0.138 0.862 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.901 -2.640 -24.983 25.194 hybrid contribution 0.393 0.926 0.628 1.186 sum -1.508 -1.713 -24.355 24.462 Atomic orbital electron populations 1.22090 0.92110 1.03331 1.03214 1.18740 0.94952 0.94371 0.76735 0.88593 1.44862 1.71853 1.14174 1.07382 1.15983 0.78230 0.84833 0.80791 1.90891 1.58322 1.15766 1.84636 1.41815 1.67040 1.15438 1.06056 1.16898 1.13944 0.93181 0.84196 1.20437 0.99054 0.94516 0.96552 1.20613 1.09954 0.98867 0.92244 1.17922 0.89355 0.91677 0.93269 1.19724 1.25803 1.09901 0.97636 0.90014 1.26796 0.92217 1.00882 0.97295 1.69974 1.08693 1.28057 1.35957 0.85376 0.80224 0.76794 0.78484 1.18085 1.19100 1.18265 1.20720 1.13201 0.94304 0.96967 1.20377 1.00108 0.99516 0.91151 1.24288 1.02272 0.90489 0.91693 1.74254 1.18791 1.11102 1.10353 1.73883 1.17033 1.23801 1.02181 1.26998 1.01060 0.84937 0.97796 1.47472 1.44429 1.12452 1.13581 1.23008 1.04030 0.80807 0.95975 1.22942 1.06154 0.94293 0.91512 1.21084 1.02235 0.95191 0.89451 0.89891 0.91438 0.91859 0.75314 0.75198 0.88791 0.89649 0.89759 0.87370 0.85202 0.87077 0.87615 0.87913 0.84388 0.86213 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.47 71.98 0.68 -2.69 16 2 C 0.26 6.49 3.12 44.24 0.14 6.62 16 3 H 0.10 2.51 7.58 -2.39 -0.02 2.49 16 4 N -0.73 -20.20 5.07 -461.42 -2.34 -22.54 16 5 C 0.70 25.38 8.34 179.05 1.49 26.87 16 6 O -0.62 -27.32 13.63 -3.96 -0.05 -27.37 16 7 N -0.66 -23.51 5.30 -316.78 -1.68 -25.19 16 8 C 0.01 0.52 6.25 38.57 0.24 0.76 16 9 C -0.09 -4.42 8.59 22.13 0.19 -4.23 16 10 C -0.20 -11.06 8.74 22.48 0.20 -10.86 16 11 C 0.08 4.48 5.57 -21.28 -0.12 4.36 16 12 C -0.50 -27.57 8.94 23.39 0.21 -27.36 16 13 H 0.08 4.29 8.02 -2.91 -0.02 4.27 16 14 C 0.05 2.41 4.77 85.24 0.41 2.82 16 15 N -0.80 -42.78 11.78 21.82 0.26 -42.52 16 16 Si 0.97 38.47 29.66 68.60 2.03 40.50 16 17 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 18 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 19 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 20 C -0.23 -11.45 9.74 22.48 0.22 -11.23 16 21 C -0.09 -3.99 9.90 22.13 0.22 -3.77 16 22 C 0.18 4.38 7.09 137.94 0.98 5.35 16 23 N -0.30 -8.72 11.92 -50.09 -0.60 -9.32 16 24 N -0.33 -9.10 12.22 -49.74 -0.61 -9.70 16 25 C 0.16 3.06 8.69 138.24 1.20 4.26 16 26 N -0.49 -8.88 3.62 -499.98 -1.81 -10.69 16 27 C 0.08 0.64 7.77 86.81 0.67 1.32 16 28 C -0.11 -0.11 7.18 31.70 0.23 0.12 16 29 C -0.04 -0.25 6.86 30.67 0.21 -0.04 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.41 10.20 8.38 -92.72 -0.78 9.43 16 34 H 0.41 11.49 8.84 -92.71 -0.82 10.67 16 35 H 0.09 4.94 6.46 -2.91 -0.02 4.92 16 36 H 0.09 5.01 6.52 -2.91 -0.02 4.99 16 37 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 38 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 39 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 40 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.10 -0.07 8.14 -2.38 -0.02 -0.09 16 43 H 0.14 -0.65 8.14 -2.39 -0.02 -0.67 16 44 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 Total: -1.00 -78.75 379.03 1.82 -76.92 By element: Atomic # 1 Polarization: 38.16 SS G_CDS: -0.55 Total: 37.61 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 7.17 Total: -7.70 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -6.78 Total: -119.96 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.05 Total: -27.37 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -78.75 1.82 -76.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264474736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.338 kcal (2) G-P(sol) polarization free energy of solvation -78.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds