Wall clock time and date at job start Wed Apr 1 2020 00:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.47185 * 2 1 4 4 N 1.46498 * 109.46755 * 239.99579 * 2 1 3 5 5 C 1.34781 * 119.99668 * 85.00536 * 4 2 1 6 6 O 1.21579 * 120.00061 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99651 * 179.97438 * 5 4 2 8 8 C 1.39247 * 119.99652 * 175.70797 * 7 5 4 9 9 C 1.39483 * 119.82984 * 215.01995 * 8 7 5 10 10 C 1.36379 * 120.16355 * 179.76644 * 9 8 7 11 11 C 1.40871 * 119.82974 * 0.50740 * 10 9 8 12 12 C 1.41156 * 120.16364 * 179.72503 * 11 10 9 13 13 H 1.08002 * 119.99548 * 214.80699 * 12 11 10 14 14 C 1.39888 * 120.00047 * 34.80485 * 12 11 10 15 15 N 1.30879 * 120.00100 * 355.55926 * 14 12 11 16 16 Si 1.86802 * 120.00161 * 175.55863 * 14 12 11 17 17 H 1.48507 * 109.46965 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47349 * 119.99563 * 16 14 12 19 19 H 1.48500 * 109.47339 * 240.00155 * 16 14 12 20 20 C 1.40871 * 119.67089 * 359.74401 * 11 10 9 21 21 C 1.36373 * 119.82950 * 0.02562 * 20 11 10 22 22 C 1.50707 * 109.46907 * 120.00025 * 2 1 3 23 23 N 1.30500 * 126.36821 * 74.97600 * 22 2 1 24 24 N 1.28575 * 109.66198 * 179.97438 * 23 22 2 25 25 C 1.30671 * 109.63612 * 359.90479 * 24 23 22 26 26 N 1.35164 * 107.33450 * 0.19704 * 25 24 23 27 27 C 1.46800 * 111.15386 * 179.69858 * 26 25 24 28 28 C 1.54763 * 105.58471 * 17.04279 * 27 26 25 29 29 C 1.51345 * 142.71911 * 180.17309 * 25 24 23 30 30 H 1.08996 * 109.47137 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46768 * 299.99989 * 1 2 3 32 32 H 1.08995 * 109.46876 * 60.00234 * 1 2 3 33 33 H 0.96999 * 120.00609 * 265.00149 * 4 2 1 34 34 H 0.96999 * 120.00200 * 355.71062 * 7 5 4 35 35 H 1.07993 * 119.91884 * 0.02562 * 9 8 7 36 36 H 1.07995 * 120.08234 * 180.25587 * 10 9 8 37 37 H 0.97001 * 119.99917 * 179.97438 * 15 14 12 38 38 H 1.08002 * 120.08384 * 179.97438 * 20 11 10 39 39 H 1.07994 * 119.91904 * 179.97438 * 21 20 11 40 40 H 1.09001 * 110.23174 * 136.06456 * 27 26 25 41 41 H 1.09004 * 110.23308 * 257.94112 * 27 26 25 42 42 H 1.08997 * 111.08107 * 216.29519 * 28 27 26 43 43 H 1.08999 * 110.98938 * 92.44449 * 28 27 26 44 44 H 1.09000 * 110.46796 * 282.26654 * 29 25 24 45 45 H 1.08994 * 110.47641 * 44.74880 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8576 1.1612 -2.4118 7 7 2.5967 -0.6536 -3.4574 8 6 2.6453 0.0163 -4.6771 9 6 2.3853 -0.6759 -5.8598 10 6 2.4263 -0.0255 -7.0578 11 6 2.7427 1.3466 -7.0997 12 6 2.7928 2.0255 -8.3362 13 1 3.5137 2.8149 -8.4900 14 6 1.9088 1.6759 -9.3624 15 7 1.0945 0.6630 -9.2080 16 14 1.8904 2.6548 -10.9533 17 1 2.8988 3.7423 -10.8771 18 1 2.2150 1.7570 -12.0908 19 1 0.5424 3.2438 -11.1566 20 6 3.0092 2.0377 -5.9014 21 6 2.9598 1.3748 -4.7106 22 6 2.0324 -0.7105 1.2305 23 7 2.0335 -1.9996 1.4335 24 7 2.5347 -2.2550 2.5897 25 6 2.8781 -1.1388 3.1758 26 7 2.5668 -0.1290 2.3329 27 6 2.9136 1.1732 2.9153 28 6 3.8921 0.8633 4.0736 29 6 3.4907 -0.5830 4.4433 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6319 -1.1526 34 1 2.8865 -1.5775 -3.3996 35 1 2.1468 -1.7287 -5.8264 36 1 2.2207 -0.5618 -7.9723 37 1 0.4813 0.4208 -9.9194 38 1 3.2529 3.0896 -5.9258 39 1 3.1642 1.9031 -3.7912 40 1 3.3998 1.8021 2.1696 41 1 2.0193 1.6654 3.2975 42 1 3.7318 1.5392 4.9136 43 1 4.9265 0.9056 3.7328 44 1 2.7588 -0.5809 5.2511 45 1 4.3694 -1.1617 4.7276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264474737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:31 Heat of formation + Delta-G solvation = 87.340245 kcal Electronic energy + Delta-G solvation = -28335.716776 eV Core-core repulsion = 24354.884540 eV Total energy + Delta-G solvation = -3980.832236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.75818 -40.01431 -37.80896 -37.51225 -35.77244 -34.31494 -33.04856 -32.54134 -30.81380 -29.74881 -29.48872 -28.55461 -27.92213 -25.07785 -24.10264 -23.03049 -21.83831 -21.46732 -20.99686 -20.40408 -20.02943 -18.22323 -17.45031 -17.23623 -17.02871 -16.31227 -15.55752 -15.23852 -15.12212 -14.84255 -14.69337 -14.17708 -13.97582 -13.94281 -13.79801 -13.59659 -13.22931 -12.84023 -12.67708 -12.29848 -12.26119 -12.08615 -12.02838 -11.78148 -11.67145 -11.57214 -11.32889 -11.13920 -10.95578 -10.70912 -10.64236 -10.46798 -10.08185 -9.56697 -9.44422 -9.38717 -9.21552 -9.05665 -8.85880 -7.50185 -6.80396 -6.57610 -4.29965 1.38316 1.97254 2.48242 2.69498 3.01715 3.11485 3.11966 3.16729 3.18698 3.23150 3.64338 3.74846 3.89783 4.01257 4.06108 4.18401 4.59602 4.66317 4.74222 4.75773 4.76457 4.96262 4.99640 5.08274 5.19996 5.26344 5.37788 5.60081 5.68005 5.74772 5.81520 6.08485 6.24017 6.38932 6.44512 6.51600 6.79504 6.83888 7.07954 7.18847 7.29574 7.43543 7.69049 7.88453 8.00503 8.13139 8.34392 8.40876 8.47255 8.68005 8.93846 8.97327 9.09339 10.33648 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029897 B = 0.001940 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.334173 B =14430.718683 C =14764.985593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.258 3.742 3 H 0.101 0.899 4 N -0.742 5.742 5 C 0.700 3.300 6 O -0.579 6.579 7 N -0.664 5.664 8 C 0.024 3.976 9 C -0.122 4.122 10 C -0.140 4.140 11 C 0.097 3.903 12 C -0.461 4.461 13 H 0.075 0.925 14 C 0.069 3.931 15 N -0.813 5.813 16 Si 0.914 3.086 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.204 4.204 21 C -0.086 4.086 22 C 0.191 3.809 23 N -0.276 5.276 24 N -0.279 5.279 25 C 0.155 3.845 26 N -0.487 5.487 27 C 0.098 3.902 28 C -0.128 4.128 29 C -0.040 4.040 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.402 0.598 34 H 0.394 0.606 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.276 0.724 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 -0.853 25.067 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.149 3.851 3 H 0.119 0.881 4 N -0.400 5.400 5 C 0.401 3.599 6 O -0.456 6.456 7 N -0.309 5.309 8 C -0.069 4.069 9 C -0.143 4.143 10 C -0.160 4.160 11 C 0.095 3.905 12 C -0.492 4.492 13 H 0.094 0.906 14 C -0.146 4.146 15 N -0.441 5.441 16 Si 0.740 3.260 17 H -0.186 1.186 18 H -0.200 1.200 19 H -0.200 1.200 20 C -0.225 4.225 21 C -0.107 4.107 22 C -0.075 4.075 23 N -0.116 5.116 24 N -0.119 5.119 25 C -0.113 4.113 26 N -0.179 5.179 27 C -0.024 4.024 28 C -0.166 4.166 29 C -0.080 4.080 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.237 0.763 34 H 0.227 0.773 35 H 0.109 0.891 36 H 0.150 0.850 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.110 0.890 44 H 0.120 0.880 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.510 -1.285 24.504 24.666 hybrid contribution 0.135 0.785 -0.449 0.915 sum 2.644 -0.499 24.054 24.205 Atomic orbital electron populations 1.22189 0.92914 1.03449 1.03116 1.18716 0.94409 0.94796 0.77173 0.88070 1.45035 1.72899 1.13953 1.08110 1.15914 0.78609 0.85303 0.80119 1.90901 1.56846 1.13956 1.83882 1.42093 1.66430 1.15439 1.06957 1.17076 1.14346 0.93132 0.82338 1.20309 1.03550 0.98044 0.92367 1.21182 1.03871 0.94662 0.96295 1.17727 0.89157 0.91340 0.92289 1.19509 1.16271 1.16895 0.96554 0.90639 1.25869 0.94416 0.94641 0.99663 1.69775 1.17702 1.23439 1.33137 0.86163 0.78890 0.80162 0.80826 1.18636 1.20049 1.20046 1.20799 1.11273 0.98221 0.92159 1.20400 0.99737 0.93008 0.97510 1.24550 1.01474 0.90599 0.90925 1.74381 1.17750 1.09918 1.09575 1.74007 1.14759 1.21558 1.01599 1.26008 1.03406 0.85788 0.96100 1.47155 1.45553 1.10748 1.14490 1.22569 1.00681 0.82377 0.96819 1.22879 0.99961 0.96090 0.97700 1.20667 1.01625 0.94692 0.90967 0.91310 0.91978 0.90067 0.76307 0.77312 0.89064 0.85022 0.91264 0.88670 0.87422 0.88187 0.88339 0.87519 0.89032 0.87980 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.47 37.16 0.35 -1.48 16 2 C 0.26 3.20 3.12 -69.08 -0.22 2.99 16 3 H 0.10 1.29 7.58 -51.93 -0.39 0.89 16 4 N -0.74 -10.32 5.07 -59.81 -0.30 -10.62 16 5 C 0.70 12.53 8.36 -86.92 -0.73 11.81 16 6 O -0.58 -12.39 13.42 5.30 0.07 -12.32 16 7 N -0.66 -12.03 5.31 -14.10 -0.07 -12.10 16 8 C 0.02 0.53 6.31 -83.57 -0.53 0.01 16 9 C -0.12 -2.83 9.90 -39.79 -0.39 -3.22 16 10 C -0.14 -3.64 8.62 -39.26 -0.34 -3.98 16 11 C 0.10 2.64 5.55 -106.80 -0.59 2.04 16 12 C -0.46 -12.43 9.02 -37.86 -0.34 -12.77 16 13 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 14 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 15 N -0.81 -21.41 10.60 55.54 0.59 -20.83 16 16 Si 0.91 19.23 29.56 -169.99 -5.03 14.21 16 17 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 19 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 20 C -0.20 -5.22 9.74 -39.26 -0.38 -5.60 16 21 C -0.09 -2.09 8.61 -39.79 -0.34 -2.43 16 22 C 0.19 2.32 7.09 -154.89 -1.10 1.22 16 23 N -0.28 -3.91 11.92 32.82 0.39 -3.52 16 24 N -0.28 -3.84 12.22 32.93 0.40 -3.44 16 25 C 0.15 1.55 8.69 -154.85 -1.35 0.20 16 26 N -0.49 -4.64 3.62 -109.19 -0.40 -5.03 16 27 C 0.10 0.47 7.78 -2.95 -0.02 0.45 16 28 C -0.13 -0.30 7.20 -24.97 -0.18 -0.48 16 29 C -0.04 -0.17 6.84 -26.73 -0.18 -0.36 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.40 5.06 8.38 -40.82 -0.34 4.72 16 34 H 0.39 5.76 8.83 -40.82 -0.36 5.40 16 35 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.13 3.54 6.13 -52.49 -0.32 3.21 16 37 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 38 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 39 H 0.11 2.57 6.22 -52.49 -0.33 2.24 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.11 -0.02 8.14 -51.93 -0.42 -0.45 16 43 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -34.59 377.45 -11.03 -45.62 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -5.94 Total: 12.28 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -6.43 Total: -9.94 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.61 Total: -55.54 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.07 Total: -12.32 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.59 -11.03 -45.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264474737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.957 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds