Wall clock time and date at job start Wed Apr 1 2020 00:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.47185 * 2 1 4 4 N 1.46498 * 109.46755 * 239.99579 * 2 1 3 5 5 C 1.34781 * 119.99668 * 85.00536 * 4 2 1 6 6 O 1.21579 * 120.00061 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99651 * 179.97438 * 5 4 2 8 8 C 1.39247 * 119.99652 * 175.70797 * 7 5 4 9 9 C 1.39483 * 119.82984 * 215.01995 * 8 7 5 10 10 C 1.36379 * 120.16355 * 179.76644 * 9 8 7 11 11 C 1.40871 * 119.82974 * 0.50740 * 10 9 8 12 12 C 1.41156 * 120.16364 * 179.72503 * 11 10 9 13 13 H 1.08002 * 119.99548 * 214.80699 * 12 11 10 14 14 C 1.39888 * 120.00047 * 34.80485 * 12 11 10 15 15 N 1.30879 * 120.00100 * 355.55926 * 14 12 11 16 16 Si 1.86802 * 120.00161 * 175.55863 * 14 12 11 17 17 H 1.48507 * 109.46965 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47349 * 119.99563 * 16 14 12 19 19 H 1.48500 * 109.47339 * 240.00155 * 16 14 12 20 20 C 1.40871 * 119.67089 * 359.74401 * 11 10 9 21 21 C 1.36373 * 119.82950 * 0.02562 * 20 11 10 22 22 C 1.50707 * 109.46907 * 120.00025 * 2 1 3 23 23 N 1.30500 * 126.36821 * 74.97600 * 22 2 1 24 24 N 1.28575 * 109.66198 * 179.97438 * 23 22 2 25 25 C 1.30671 * 109.63612 * 359.90479 * 24 23 22 26 26 N 1.35164 * 107.33450 * 0.19704 * 25 24 23 27 27 C 1.46800 * 111.15386 * 179.69858 * 26 25 24 28 28 C 1.54763 * 105.58471 * 17.04279 * 27 26 25 29 29 C 1.51345 * 142.71911 * 180.17309 * 25 24 23 30 30 H 1.08996 * 109.47137 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46768 * 299.99989 * 1 2 3 32 32 H 1.08995 * 109.46876 * 60.00234 * 1 2 3 33 33 H 0.96999 * 120.00609 * 265.00149 * 4 2 1 34 34 H 0.96999 * 120.00200 * 355.71062 * 7 5 4 35 35 H 1.07993 * 119.91884 * 0.02562 * 9 8 7 36 36 H 1.07995 * 120.08234 * 180.25587 * 10 9 8 37 37 H 0.97001 * 119.99917 * 179.97438 * 15 14 12 38 38 H 1.08002 * 120.08384 * 179.97438 * 20 11 10 39 39 H 1.07994 * 119.91904 * 179.97438 * 21 20 11 40 40 H 1.09001 * 110.23174 * 136.06456 * 27 26 25 41 41 H 1.09004 * 110.23308 * 257.94112 * 27 26 25 42 42 H 1.08997 * 111.08107 * 216.29519 * 28 27 26 43 43 H 1.08999 * 110.98938 * 92.44449 * 28 27 26 44 44 H 1.09000 * 110.46796 * 282.26654 * 29 25 24 45 45 H 1.08994 * 110.47641 * 44.74880 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8576 1.1612 -2.4118 7 7 2.5967 -0.6536 -3.4574 8 6 2.6453 0.0163 -4.6771 9 6 2.3853 -0.6759 -5.8598 10 6 2.4263 -0.0255 -7.0578 11 6 2.7427 1.3466 -7.0997 12 6 2.7928 2.0255 -8.3362 13 1 3.5137 2.8149 -8.4900 14 6 1.9088 1.6759 -9.3624 15 7 1.0945 0.6630 -9.2080 16 14 1.8904 2.6548 -10.9533 17 1 2.8988 3.7423 -10.8771 18 1 2.2150 1.7570 -12.0908 19 1 0.5424 3.2438 -11.1566 20 6 3.0092 2.0377 -5.9014 21 6 2.9598 1.3748 -4.7106 22 6 2.0324 -0.7105 1.2305 23 7 2.0335 -1.9996 1.4335 24 7 2.5347 -2.2550 2.5897 25 6 2.8781 -1.1388 3.1758 26 7 2.5668 -0.1290 2.3329 27 6 2.9136 1.1732 2.9153 28 6 3.8921 0.8633 4.0736 29 6 3.4907 -0.5830 4.4433 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6319 -1.1526 34 1 2.8865 -1.5775 -3.3996 35 1 2.1468 -1.7287 -5.8264 36 1 2.2207 -0.5618 -7.9723 37 1 0.4813 0.4208 -9.9194 38 1 3.2529 3.0896 -5.9258 39 1 3.1642 1.9031 -3.7912 40 1 3.3998 1.8021 2.1696 41 1 2.0193 1.6654 3.2975 42 1 3.7318 1.5392 4.9136 43 1 4.9265 0.9056 3.7328 44 1 2.7588 -0.5809 5.2511 45 1 4.3694 -1.1617 4.7276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264474737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:30 Heat of formation + Delta-G solvation = 65.879881 kcal Electronic energy + Delta-G solvation = -28336.647367 eV Core-core repulsion = 24354.884540 eV Total energy + Delta-G solvation = -3981.762827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.53898 -41.52103 -39.37850 -38.26893 -37.07696 -36.01774 -34.77686 -33.42378 -31.90568 -31.41635 -30.57535 -30.23818 -28.51279 -26.83155 -25.21530 -23.71215 -23.27365 -22.70469 -22.24580 -21.66313 -21.30282 -19.63093 -19.15707 -18.42756 -18.02836 -17.29744 -17.02402 -16.74846 -16.37922 -15.98739 -15.67113 -15.57088 -15.14167 -14.90141 -14.73727 -14.50880 -14.30903 -14.10700 -14.05176 -13.93428 -13.57021 -13.27215 -13.17480 -12.87717 -12.79101 -12.72890 -12.54672 -12.50552 -12.47556 -12.24688 -11.81697 -11.48441 -11.38242 -11.26409 -11.09838 -11.04519 -10.67246 -10.38673 -10.16624 -9.44699 -8.69407 -8.48366 -6.30810 0.57785 0.85184 1.16102 1.26153 1.40415 1.47856 1.55677 1.60323 1.82270 2.14074 2.25769 2.64487 2.82665 3.07475 3.24820 3.42649 3.66892 3.70317 3.86192 3.94615 3.99413 4.32683 4.40013 4.40770 4.47703 4.49373 4.56286 4.70614 4.77949 4.82555 4.94117 4.97902 5.05888 5.08484 5.12754 5.15188 5.16669 5.30067 5.34573 5.44576 5.68845 5.73727 5.79694 6.02939 6.10909 6.22499 6.40958 6.70312 6.98720 7.01287 7.03932 7.53634 7.57809 8.44556 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029897 B = 0.001940 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.334173 B =14430.718683 C =14764.985593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.261 3.739 3 H 0.100 0.900 4 N -0.725 5.725 5 C 0.703 3.297 6 O -0.613 6.613 7 N -0.658 5.658 8 C 0.041 3.959 9 C -0.121 4.121 10 C -0.158 4.158 11 C 0.065 3.935 12 C -0.496 4.496 13 H 0.073 0.927 14 C 0.026 3.974 15 N -0.843 5.843 16 Si 0.989 3.011 17 H -0.260 1.260 18 H -0.264 1.264 19 H -0.270 1.270 20 C -0.218 4.218 21 C -0.095 4.095 22 C 0.181 3.819 23 N -0.306 5.306 24 N -0.329 5.329 25 C 0.161 3.839 26 N -0.488 5.488 27 C 0.083 3.917 28 C -0.113 4.113 29 C -0.039 4.039 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.411 0.589 34 H 0.413 0.587 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.284 0.716 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.143 0.857 43 H 0.094 0.906 44 H 0.124 0.876 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.557 -0.358 27.243 27.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.153 3.847 3 H 0.117 0.883 4 N -0.382 5.382 5 C 0.403 3.597 6 O -0.493 6.493 7 N -0.305 5.305 8 C -0.053 4.053 9 C -0.141 4.141 10 C -0.178 4.178 11 C 0.063 3.937 12 C -0.527 4.527 13 H 0.091 0.909 14 C -0.186 4.186 15 N -0.471 5.471 16 Si 0.810 3.190 17 H -0.183 1.183 18 H -0.188 1.188 19 H -0.195 1.195 20 C -0.238 4.238 21 C -0.115 4.115 22 C -0.087 4.087 23 N -0.146 5.146 24 N -0.170 5.170 25 C -0.108 4.108 26 N -0.179 5.179 27 C -0.037 4.037 28 C -0.151 4.151 29 C -0.079 4.079 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.247 0.753 34 H 0.250 0.750 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.137 0.863 42 H 0.161 0.839 43 H 0.112 0.888 44 H 0.142 0.858 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.848 -0.829 26.749 26.913 hybrid contribution 0.055 0.590 -0.875 1.057 sum 2.902 -0.239 25.874 26.037 Atomic orbital electron populations 1.22102 0.92288 1.03267 1.03230 1.18748 0.94825 0.94480 0.76681 0.88252 1.44881 1.71708 1.14209 1.07418 1.15950 0.78168 0.84849 0.80711 1.90882 1.58214 1.15613 1.84545 1.41895 1.66669 1.16211 1.05766 1.17085 1.11739 0.92679 0.83814 1.20528 1.02506 0.99491 0.91582 1.21157 1.05149 0.94534 0.96958 1.18046 0.90476 0.92185 0.93025 1.19731 1.17532 1.17791 0.97672 0.90906 1.26744 0.93481 0.95524 1.02828 1.69841 1.18195 1.24593 1.34464 0.85057 0.78945 0.78651 0.76372 1.18335 1.18844 1.19488 1.20930 1.11757 0.98602 0.92470 1.20511 1.00040 0.93953 0.97019 1.24271 1.02432 0.90451 0.91563 1.74261 1.18727 1.11183 1.10448 1.73886 1.17044 1.23820 1.02208 1.27003 1.01341 0.84942 0.97504 1.47457 1.44473 1.12427 1.13523 1.23069 1.02420 0.80575 0.97670 1.22958 0.99271 0.95174 0.97656 1.21029 1.02327 0.95617 0.88925 0.91592 0.89807 0.91930 0.75299 0.75048 0.86019 0.86361 0.90563 0.88420 0.87161 0.87984 0.86302 0.83931 0.88778 0.85778 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.47 71.98 0.68 -2.70 16 2 C 0.26 6.29 3.12 44.25 0.14 6.43 16 3 H 0.10 2.46 7.58 -2.39 -0.02 2.44 16 4 N -0.72 -19.62 5.07 -461.41 -2.34 -21.96 16 5 C 0.70 24.66 8.36 179.05 1.50 26.15 16 6 O -0.61 -26.11 13.42 -3.96 -0.05 -26.16 16 7 N -0.66 -23.09 5.31 -316.78 -1.68 -24.78 16 8 C 0.04 1.82 6.31 38.56 0.24 2.06 16 9 C -0.12 -5.55 9.90 22.14 0.22 -5.33 16 10 C -0.16 -8.39 8.62 22.48 0.19 -8.20 16 11 C 0.07 3.64 5.55 -21.27 -0.12 3.52 16 12 C -0.50 -27.60 9.02 23.39 0.21 -27.39 16 13 H 0.07 3.92 7.85 -2.91 -0.02 3.89 16 14 C 0.03 1.34 5.42 85.23 0.46 1.80 16 15 N -0.84 -45.22 10.60 21.82 0.23 -44.99 16 16 Si 0.99 39.72 29.56 68.60 2.03 41.75 16 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 18 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 19 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 20 C -0.22 -11.43 9.74 22.48 0.22 -11.21 16 21 C -0.09 -4.63 8.61 22.13 0.19 -4.44 16 22 C 0.18 4.25 7.09 137.95 0.98 5.23 16 23 N -0.31 -8.63 11.92 -50.09 -0.60 -9.23 16 24 N -0.33 -8.96 12.22 -49.74 -0.61 -9.57 16 25 C 0.16 2.96 8.69 138.24 1.20 4.16 16 26 N -0.49 -8.44 3.62 -499.35 -1.81 -10.25 16 27 C 0.08 0.56 7.78 86.92 0.68 1.24 16 28 C -0.11 -0.08 7.20 31.73 0.23 0.15 16 29 C -0.04 -0.22 6.84 30.59 0.21 -0.01 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.41 9.98 8.38 -92.71 -0.78 9.20 16 34 H 0.41 11.34 8.83 -92.71 -0.82 10.52 16 35 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 36 H 0.12 6.55 6.13 -2.91 -0.02 6.54 16 37 H 0.28 13.81 8.30 -92.71 -0.77 13.04 16 38 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 39 H 0.11 5.29 6.22 -2.91 -0.02 5.28 16 40 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.12 0.34 8.14 -2.38 -0.02 0.32 16 42 H 0.14 -0.83 8.14 -2.39 -0.02 -0.85 16 43 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -78.32 377.45 1.86 -76.46 By element: Atomic # 1 Polarization: 37.81 SS G_CDS: -0.54 Total: 37.27 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 7.23 Total: -8.54 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -6.81 Total: -120.78 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.05 Total: -26.16 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -78.32 1.86 -76.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264474737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.340 kcal (2) G-P(sol) polarization free energy of solvation -78.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds