Wall clock time and date at job start Wed Apr 1 2020 00:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47057 * 2 1 4 4 N 1.40082 * 126.03461 * 90.02457 * 3 2 1 5 5 C 1.30839 * 108.20386 * 179.97438 * 4 3 2 6 6 C 1.50707 * 125.89962 * 180.02562 * 5 4 3 7 7 C 1.39870 * 108.20480 * 0.02562 * 5 4 3 8 8 S 1.76196 * 126.04122 * 179.97438 * 7 5 4 9 9 O 1.42100 * 106.39984 * 336.47480 * 8 7 5 10 10 O 1.42105 * 106.39961 * 203.56235 * 8 7 5 11 11 N 1.65593 * 107.22113 * 90.02152 * 8 7 5 12 12 C 1.46502 * 119.99605 * 269.99694 * 11 8 7 13 13 C 1.50700 * 109.47099 * 264.99737 * 12 11 8 14 14 H 1.07992 * 120.00396 * 0.02562 * 13 12 11 15 15 C 1.37886 * 119.99695 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00026 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99768 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46985 * 89.99876 * 17 15 13 19 19 H 1.48494 * 109.47043 * 209.99938 * 17 15 13 20 20 H 1.48502 * 109.47164 * 330.00049 * 17 15 13 21 21 C 1.46499 * 120.00395 * 89.99978 * 11 8 7 22 22 C 1.53000 * 109.46840 * 265.00156 * 21 11 8 23 23 C 1.53002 * 117.49654 * 243.74138 * 22 21 11 24 24 C 1.52999 * 117.49718 * 175.08794 * 22 21 11 25 25 C 1.34949 * 126.03989 * 270.30658 * 3 2 1 26 26 C 1.50696 * 126.12509 * 0.02562 * 25 3 2 27 27 H 1.09005 * 109.47001 * 59.99941 * 1 2 3 28 28 H 1.09000 * 109.47484 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47194 * 300.00355 * 1 2 3 30 30 H 1.09000 * 109.46850 * 239.99964 * 2 1 3 31 31 H 1.08995 * 109.46924 * 120.00230 * 2 1 3 32 32 H 1.08999 * 109.46933 * 269.97975 * 6 5 4 33 33 H 1.08997 * 109.46636 * 29.97990 * 6 5 4 34 34 H 1.08999 * 109.46932 * 149.97852 * 6 5 4 35 35 H 1.08995 * 109.47474 * 25.00485 * 12 11 8 36 36 H 1.09003 * 109.46943 * 145.00256 * 12 11 8 37 37 H 0.97000 * 119.99891 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47391 * 144.99826 * 21 11 8 39 39 H 1.09001 * 109.46813 * 24.99883 * 21 11 8 40 40 H 1.08997 * 115.55341 * 29.41678 * 22 21 11 41 41 H 1.09000 * 117.49888 * 0.02562 * 23 22 21 42 42 H 1.09005 * 117.49831 * 145.01661 * 23 22 21 43 43 H 1.08998 * 117.50075 * 214.97635 * 24 22 21 44 44 H 1.09007 * 117.49719 * 359.97438 * 24 22 21 45 45 H 1.09000 * 109.47326 * 270.17605 * 26 25 3 46 46 H 1.09008 * 109.47330 * 30.17234 * 26 25 3 47 47 H 1.09001 * 109.47410 * 150.17321 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1580 1.1328 5 6 2.7090 3.3322 0.7322 6 6 3.1151 4.4774 1.6237 7 6 2.7113 3.3411 -0.6665 8 16 3.1879 4.6908 -1.6939 9 8 3.0269 5.8665 -0.9121 10 8 2.5392 4.4931 -2.9427 11 7 4.8116 4.5388 -1.9811 12 6 5.7774 5.1687 -1.0774 13 6 6.1724 6.5162 -1.6245 14 1 5.7463 6.8684 -2.5522 15 6 7.0778 7.2995 -0.9405 16 7 7.5963 6.8708 0.1896 17 14 7.5668 8.9701 -1.6182 18 1 6.6460 10.0079 -1.0888 19 1 8.9577 9.2846 -1.2037 20 1 7.4855 8.9460 -3.1008 21 6 5.2823 3.7745 -3.1389 22 6 5.5949 2.3395 -2.7098 23 6 7.0462 1.8686 -2.8231 24 6 5.9930 1.3461 -3.8031 25 6 2.2775 2.1317 -1.0912 26 6 2.1159 1.6993 -2.5257 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.2443 5.0967 1.8390 33 1 3.5216 4.0855 2.5560 34 1 3.8729 5.0782 1.1209 35 1 5.3260 5.2941 -0.0933 36 1 6.6619 4.5372 -0.9936 37 1 8.2335 7.4217 0.6706 38 1 6.1838 4.2388 -3.5387 39 1 4.5082 3.7638 -3.9062 40 1 5.0063 1.9597 -1.8747 41 1 7.7784 2.5812 -3.2029 42 1 7.4124 1.1788 -2.0626 43 1 5.6666 0.3126 -3.6872 44 1 6.0318 1.7147 -4.8282 45 1 3.0446 1.2493 -2.8764 46 1 1.3092 0.9696 -2.5966 47 1 1.8768 2.5662 -3.1418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265986097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:10 Heat of formation + Delta-G solvation = 20.032757 kcal Electronic energy + Delta-G solvation = -29861.684190 eV Core-core repulsion = 25981.084482 eV Total energy + Delta-G solvation = -3880.599708 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.30611 -37.62082 -36.56833 -35.11429 -34.96740 -34.71200 -32.47005 -32.30770 -30.79368 -27.86190 -27.56365 -27.02983 -25.30148 -23.50012 -22.37696 -22.09178 -21.06602 -20.29457 -19.45933 -18.15979 -17.23414 -16.54970 -16.41440 -15.86743 -15.64892 -15.36698 -14.72746 -14.54318 -14.35485 -14.12821 -13.82714 -13.38758 -13.23780 -13.14111 -13.04798 -12.54087 -12.45911 -12.43853 -12.35850 -11.99135 -11.80803 -11.79821 -11.64661 -11.35096 -11.31883 -11.10535 -11.06492 -11.01650 -10.89224 -10.73785 -10.50747 -10.23672 -10.11905 -9.98348 -9.66717 -9.55259 -9.02594 -8.90879 -8.37546 -7.99478 -6.00445 -4.03773 1.20942 1.68311 2.40858 2.52604 3.36713 3.42817 3.45811 3.82778 4.08994 4.27088 4.42272 4.48037 4.55836 4.65225 4.76318 4.87050 4.96518 4.98429 5.09583 5.16941 5.20377 5.25703 5.34491 5.39112 5.44375 5.56029 5.66629 5.72045 5.77872 5.85737 5.87811 5.99243 6.05207 6.10975 6.16394 6.20214 6.32628 6.34354 6.55203 6.62490 6.78035 6.95499 7.35459 7.50467 7.67152 7.69845 7.97283 8.27140 8.98525 9.60836 11.07972 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.004602 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.883866 B = 6082.444330 C = 6955.639221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.122 3.878 3 N -0.366 5.366 4 N -0.304 5.304 5 C 0.170 3.830 6 C -0.094 4.094 7 C -0.813 4.813 8 S 2.715 3.285 9 O -0.943 6.943 10 O -0.984 6.984 11 N -0.979 5.979 12 C 0.257 3.743 13 C -0.526 4.526 14 H 0.061 0.939 15 C 0.064 3.936 16 N -0.895 5.895 17 Si 0.893 3.107 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.152 3.848 22 C -0.168 4.168 23 C -0.172 4.172 24 C -0.184 4.184 25 C 0.205 3.795 26 C -0.136 4.136 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.040 0.960 36 H 0.037 0.963 37 H 0.263 0.737 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.076 0.924 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.337 -16.050 -3.807 18.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.144 5.144 4 N -0.125 5.125 5 C 0.001 3.999 6 C -0.152 4.152 7 C -0.909 4.909 8 S 2.802 3.198 9 O -0.933 6.933 10 O -0.975 6.975 11 N -0.817 5.817 12 C 0.136 3.864 13 C -0.565 4.565 14 H 0.079 0.921 15 C -0.138 4.138 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.198 1.198 21 C 0.025 3.975 22 C -0.189 4.189 23 C -0.209 4.209 24 C -0.222 4.222 25 C 0.072 3.928 26 C -0.194 4.194 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.095 0.905 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.076 -16.285 -2.888 19.366 hybrid contribution 0.652 0.484 -0.315 0.870 sum -9.424 -15.801 -3.203 18.674 Atomic orbital electron populations 1.22205 0.94134 1.03115 1.03508 1.21731 0.95404 0.78138 1.04604 1.49060 1.49963 1.11762 1.03644 1.77338 1.24319 1.04065 1.06730 1.21927 0.92863 0.93715 0.91361 1.20621 1.03553 0.92949 0.98120 1.31703 1.31478 1.18822 1.08884 1.01175 0.72546 0.73167 0.72899 1.93574 1.85110 1.43409 1.71253 1.93390 1.74806 1.86960 1.42314 1.57402 1.23772 1.64443 1.36047 1.19103 0.87399 0.92209 0.87715 1.21490 1.24800 1.01896 1.08353 0.92125 1.24897 0.95984 0.98133 0.94831 1.69921 1.30343 1.37795 1.15339 0.86569 0.77573 0.84407 0.79329 1.20415 1.21297 1.19847 1.20791 1.01626 0.87427 0.87607 1.22964 0.98902 0.96384 1.00607 1.22977 0.92474 1.03545 1.01882 1.22939 1.04972 0.98408 0.95863 1.20881 0.91518 0.89318 0.91118 1.21228 1.03750 1.05618 0.88825 0.91844 0.90373 0.91445 0.88783 0.88448 0.89471 0.90569 0.87850 0.94267 0.94528 0.92779 0.89324 0.89844 0.88360 0.88293 0.89473 0.89480 0.88644 0.88775 0.90547 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.24 37.16 0.38 -0.95 16 2 C 0.12 1.12 6.78 -4.04 -0.03 1.09 16 3 N -0.37 -5.16 3.61 -57.14 -0.21 -5.36 16 4 N -0.30 -5.19 12.58 33.67 0.42 -4.77 16 5 C 0.17 3.10 7.21 -82.40 -0.59 2.50 16 6 C -0.09 -1.65 9.53 36.01 0.34 -1.30 16 7 C -0.81 -14.53 6.17 -40.01 -0.25 -14.77 16 8 S 2.71 54.77 5.62 -107.50 -0.60 54.16 16 9 O -0.94 -22.22 14.88 -57.17 -0.85 -23.07 16 10 O -0.98 -19.38 13.80 -57.17 -0.79 -20.17 16 11 N -0.98 -19.97 2.77 -115.66 -0.32 -20.29 16 12 C 0.26 6.30 5.10 -5.19 -0.03 6.27 16 13 C -0.53 -14.37 9.38 -34.44 -0.32 -14.69 16 14 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 17 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.15 2.58 5.96 -4.04 -0.02 2.56 16 22 C -0.17 -2.43 5.53 -90.62 -0.50 -2.93 16 23 C -0.17 -2.31 10.18 -26.70 -0.27 -2.59 16 24 C -0.18 -2.09 10.25 -26.70 -0.27 -2.37 16 25 C 0.21 3.05 6.68 -82.27 -0.55 2.50 16 26 C -0.14 -1.55 9.57 36.00 0.34 -1.21 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.62 7.68 -51.93 -0.40 0.22 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.10 2.06 5.02 -51.93 -0.26 1.80 16 35 H 0.04 1.01 5.75 -51.93 -0.30 0.72 16 36 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.09 1.55 7.84 -51.93 -0.41 1.14 16 39 H 0.08 1.30 6.91 -51.93 -0.36 0.94 16 40 H 0.10 1.48 7.64 -51.93 -0.40 1.08 16 41 H 0.10 1.38 8.03 -51.93 -0.42 0.96 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.09 0.93 7.38 -51.93 -0.38 0.55 16 46 H 0.08 0.63 7.74 -51.92 -0.40 0.23 16 47 H 0.13 1.66 5.54 -51.93 -0.29 1.37 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -33.36 392.47 -9.97 -43.32 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.38 Total: 2.86 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -1.87 Total: -24.21 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.63 Total: -55.32 kcal Atomic # 8 Polarization: -41.61 SS G_CDS: -1.64 Total: -43.24 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 54.77 SS G_CDS: -0.60 Total: 54.16 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.36 -9.97 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265986097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.355 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds