Wall clock time and date at job start Wed Apr 1 2020 00:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47057 * 2 1 4 4 N 1.40082 * 126.03461 * 90.02457 * 3 2 1 5 5 C 1.30839 * 108.20386 * 179.97438 * 4 3 2 6 6 C 1.50707 * 125.89962 * 180.02562 * 5 4 3 7 7 C 1.39870 * 108.20480 * 0.02562 * 5 4 3 8 8 S 1.76196 * 126.04122 * 179.97438 * 7 5 4 9 9 O 1.42100 * 106.39984 * 336.47480 * 8 7 5 10 10 O 1.42105 * 106.39961 * 203.56235 * 8 7 5 11 11 N 1.65593 * 107.22113 * 90.02152 * 8 7 5 12 12 C 1.46502 * 119.99605 * 269.99694 * 11 8 7 13 13 C 1.50700 * 109.47099 * 264.99737 * 12 11 8 14 14 H 1.07992 * 120.00396 * 0.02562 * 13 12 11 15 15 C 1.37886 * 119.99695 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00026 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99768 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46985 * 89.99876 * 17 15 13 19 19 H 1.48494 * 109.47043 * 209.99938 * 17 15 13 20 20 H 1.48502 * 109.47164 * 330.00049 * 17 15 13 21 21 C 1.46499 * 120.00395 * 89.99978 * 11 8 7 22 22 C 1.53000 * 109.46840 * 265.00156 * 21 11 8 23 23 C 1.53002 * 117.49654 * 243.74138 * 22 21 11 24 24 C 1.52999 * 117.49718 * 175.08794 * 22 21 11 25 25 C 1.34949 * 126.03989 * 270.30658 * 3 2 1 26 26 C 1.50696 * 126.12509 * 0.02562 * 25 3 2 27 27 H 1.09005 * 109.47001 * 59.99941 * 1 2 3 28 28 H 1.09000 * 109.47484 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47194 * 300.00355 * 1 2 3 30 30 H 1.09000 * 109.46850 * 239.99964 * 2 1 3 31 31 H 1.08995 * 109.46924 * 120.00230 * 2 1 3 32 32 H 1.08999 * 109.46933 * 269.97975 * 6 5 4 33 33 H 1.08997 * 109.46636 * 29.97990 * 6 5 4 34 34 H 1.08999 * 109.46932 * 149.97852 * 6 5 4 35 35 H 1.08995 * 109.47474 * 25.00485 * 12 11 8 36 36 H 1.09003 * 109.46943 * 145.00256 * 12 11 8 37 37 H 0.97000 * 119.99891 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.47391 * 144.99826 * 21 11 8 39 39 H 1.09001 * 109.46813 * 24.99883 * 21 11 8 40 40 H 1.08997 * 115.55341 * 29.41678 * 22 21 11 41 41 H 1.09000 * 117.49888 * 0.02562 * 23 22 21 42 42 H 1.09005 * 117.49831 * 145.01661 * 23 22 21 43 43 H 1.08998 * 117.50075 * 214.97635 * 24 22 21 44 44 H 1.09007 * 117.49719 * 359.97438 * 24 22 21 45 45 H 1.09000 * 109.47326 * 270.17605 * 26 25 3 46 46 H 1.09008 * 109.47330 * 30.17234 * 26 25 3 47 47 H 1.09001 * 109.47410 * 150.17321 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2935 2.1580 1.1328 5 6 2.7090 3.3322 0.7322 6 6 3.1151 4.4774 1.6237 7 6 2.7113 3.3411 -0.6665 8 16 3.1879 4.6908 -1.6939 9 8 3.0269 5.8665 -0.9121 10 8 2.5392 4.4931 -2.9427 11 7 4.8116 4.5388 -1.9811 12 6 5.7774 5.1687 -1.0774 13 6 6.1724 6.5162 -1.6245 14 1 5.7463 6.8684 -2.5522 15 6 7.0778 7.2995 -0.9405 16 7 7.5963 6.8708 0.1896 17 14 7.5668 8.9701 -1.6182 18 1 6.6460 10.0079 -1.0888 19 1 8.9577 9.2846 -1.2037 20 1 7.4855 8.9460 -3.1008 21 6 5.2823 3.7745 -3.1389 22 6 5.5949 2.3395 -2.7098 23 6 7.0462 1.8686 -2.8231 24 6 5.9930 1.3461 -3.8031 25 6 2.2775 2.1317 -1.0912 26 6 2.1159 1.6993 -2.5257 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.2443 5.0967 1.8390 33 1 3.5216 4.0855 2.5560 34 1 3.8729 5.0782 1.1209 35 1 5.3260 5.2941 -0.0933 36 1 6.6619 4.5372 -0.9936 37 1 8.2335 7.4217 0.6706 38 1 6.1838 4.2388 -3.5387 39 1 4.5082 3.7638 -3.9062 40 1 5.0063 1.9597 -1.8747 41 1 7.7784 2.5812 -3.2029 42 1 7.4124 1.1788 -2.0626 43 1 5.6666 0.3126 -3.6872 44 1 6.0318 1.7147 -4.8282 45 1 3.0446 1.2493 -2.8764 46 1 1.3092 0.9696 -2.5966 47 1 1.8768 2.5662 -3.1418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265986097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:09 Heat of formation + Delta-G solvation = -1.411553 kcal Electronic energy + Delta-G solvation = -29862.614085 eV Core-core repulsion = 25981.084482 eV Total energy + Delta-G solvation = -3881.529603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.50754 -38.85027 -38.18598 -36.72663 -36.31295 -36.00274 -34.31644 -33.53269 -31.88801 -29.64235 -28.74533 -28.12901 -26.96179 -24.40309 -24.20561 -23.12410 -22.30652 -21.48807 -20.60320 -19.69921 -18.72346 -18.37980 -17.93654 -17.30349 -16.95910 -16.53756 -16.24440 -16.05464 -15.43697 -15.29151 -15.01588 -14.75251 -14.49638 -14.30101 -14.26574 -14.06681 -13.90660 -13.65341 -13.43446 -13.22927 -13.18902 -12.99561 -12.89355 -12.84151 -12.78827 -12.65393 -12.51548 -12.34345 -12.25432 -12.24092 -12.07518 -11.93056 -11.73314 -11.51749 -11.19648 -10.70716 -10.52629 -10.21736 -10.16549 -9.68177 -8.13116 -6.24005 -0.33642 0.50992 1.13504 1.39694 1.42479 1.45755 1.54187 2.31345 2.47106 2.98020 3.01376 3.17983 3.24489 3.39509 3.63011 3.83468 3.86256 4.00215 4.04457 4.06697 4.19443 4.27155 4.29356 4.32441 4.54695 4.60162 4.62872 4.64974 4.69173 4.73990 4.87724 4.89380 4.94584 4.96322 5.06788 5.12053 5.14289 5.19542 5.30398 5.35482 5.38038 5.44989 5.59215 5.79548 5.91750 6.02444 6.18731 6.41753 6.84146 7.43930 8.94353 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.004602 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.883866 B = 6082.444330 C = 6955.639221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.355 5.355 4 N -0.318 5.318 5 C 0.151 3.849 6 C -0.094 4.094 7 C -0.836 4.836 8 S 2.723 3.277 9 O -0.988 6.988 10 O -0.983 6.983 11 N -0.984 5.984 12 C 0.276 3.724 13 C -0.543 4.543 14 H 0.054 0.946 15 C 0.015 3.985 16 N -0.923 5.923 17 Si 0.951 3.049 18 H -0.279 1.279 19 H -0.277 1.277 20 H -0.264 1.264 21 C 0.146 3.854 22 C -0.185 4.185 23 C -0.187 4.187 24 C -0.146 4.146 25 C 0.218 3.782 26 C -0.139 4.139 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.044 0.956 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.019 0.981 36 H 0.023 0.977 37 H 0.265 0.735 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.228 -18.952 -5.588 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.011 4.011 3 N -0.134 5.134 4 N -0.139 5.139 5 C -0.018 4.018 6 C -0.152 4.152 7 C -0.936 4.936 8 S 2.814 3.186 9 O -0.979 6.979 10 O -0.974 6.974 11 N -0.821 5.821 12 C 0.152 3.848 13 C -0.582 4.582 14 H 0.072 0.928 15 C -0.184 4.184 16 N -0.563 5.563 17 Si 0.776 3.224 18 H -0.205 1.205 19 H -0.202 1.202 20 H -0.189 1.189 21 C 0.021 3.979 22 C -0.205 4.205 23 C -0.224 4.224 24 C -0.183 4.183 25 C 0.083 3.917 26 C -0.196 4.196 27 H 0.082 0.918 28 H 0.129 0.871 29 H 0.064 0.936 30 H 0.149 0.851 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.037 0.963 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.134 0.866 44 H 0.127 0.873 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.964 -19.191 -4.704 22.597 hybrid contribution 0.848 1.233 0.241 1.515 sum -10.116 -17.958 -4.463 21.089 Atomic orbital electron populations 1.22196 0.92897 1.04940 1.02433 1.22322 0.96424 0.75530 1.06864 1.49449 1.48497 1.12963 1.02476 1.77243 1.24395 1.03787 1.08507 1.21949 0.93920 0.94258 0.91674 1.20543 1.03038 0.93112 0.98526 1.31245 1.34324 1.19639 1.08422 1.00530 0.72211 0.73111 0.72744 1.93514 1.85669 1.46486 1.72220 1.93384 1.74515 1.87131 1.42340 1.57258 1.23218 1.65099 1.36539 1.18598 0.87399 0.91196 0.87564 1.21820 1.24858 1.03303 1.08221 0.92773 1.25678 0.96050 1.01581 0.95137 1.70020 1.30876 1.39118 1.16328 0.85658 0.77524 0.80031 0.79140 1.20516 1.20191 1.18872 1.20986 1.01477 0.88680 0.86782 1.22762 0.99676 0.95522 1.02535 1.23018 0.92072 1.03919 1.03430 1.23081 1.01127 0.98797 0.95339 1.21328 0.89382 0.88190 0.92849 1.21415 1.06378 1.06081 0.85749 0.91817 0.87068 0.93628 0.85090 0.87713 0.88835 0.89113 0.90861 0.96328 0.95944 0.92563 0.90592 0.88373 0.88786 0.89517 0.89053 0.86618 0.87297 0.86571 0.86516 0.87149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 71.98 0.74 -1.24 16 2 C 0.11 1.54 6.78 86.38 0.59 2.13 16 3 N -0.36 -9.22 3.61 -334.70 -1.21 -10.43 16 4 N -0.32 -10.72 12.58 -47.38 -0.60 -11.31 16 5 C 0.15 5.62 7.21 43.10 0.31 5.93 16 6 C -0.09 -3.50 9.53 71.24 0.68 -2.82 16 7 C -0.84 -30.08 6.17 21.99 0.14 -29.95 16 8 S 2.72 113.25 5.62 -56.49 -0.32 112.93 16 9 O -0.99 -49.32 14.88 -128.00 -1.90 -51.22 16 10 O -0.98 -38.73 13.80 -128.00 -1.77 -40.50 16 11 N -0.98 -41.59 2.77 -519.84 -1.44 -43.03 16 12 C 0.28 14.23 5.10 85.63 0.44 14.67 16 13 C -0.54 -30.81 9.38 25.60 0.24 -30.57 16 14 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 15 C 0.01 0.85 5.46 84.66 0.46 1.31 16 16 N -0.92 -54.55 13.29 21.45 0.28 -54.27 16 17 Si 0.95 44.87 29.54 68.60 2.03 46.90 16 18 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 20 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 21 C 0.15 4.97 5.96 86.38 0.51 5.49 16 22 C -0.18 -5.10 5.53 -10.79 -0.06 -5.16 16 23 C -0.19 -4.84 10.18 30.62 0.31 -4.53 16 24 C -0.15 -2.81 10.25 30.62 0.31 -2.50 16 25 C 0.22 6.06 6.68 41.40 0.28 6.34 16 26 C -0.14 -2.65 9.57 71.23 0.68 -1.97 16 27 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 28 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.13 0.97 7.68 -2.39 -0.02 0.96 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.07 3.18 5.02 -2.39 -0.01 3.17 16 35 H 0.02 1.04 5.75 -2.39 -0.01 1.03 16 36 H 0.02 1.20 8.11 -2.39 -0.02 1.18 16 37 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 38 H 0.08 2.72 7.84 -2.39 -0.02 2.70 16 39 H 0.10 2.98 6.91 -2.39 -0.02 2.96 16 40 H 0.09 2.69 7.64 -2.39 -0.02 2.68 16 41 H 0.09 2.43 8.03 -2.39 -0.02 2.41 16 42 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 43 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.12 1.76 7.38 -2.39 -0.02 1.74 16 46 H 0.12 1.29 7.74 -2.38 -0.02 1.27 16 47 H 0.11 2.60 5.54 -2.39 -0.01 2.58 16 Total: -1.00 -75.92 392.47 1.67 -74.25 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.97 Total: 19.54 kcal Atomic # 6 Polarization: -48.49 SS G_CDS: 5.63 Total: -42.86 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -2.96 Total: -119.04 kcal Atomic # 8 Polarization: -88.05 SS G_CDS: -3.67 Total: -91.72 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 113.25 SS G_CDS: -0.32 Total: 112.93 kcal Total: -75.92 1.67 -74.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265986097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.838 kcal (2) G-P(sol) polarization free energy of solvation -75.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds