Wall clock time and date at job start Wed Apr 1 2020 00:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.46923 * 2 1 4 4 N 1.40083 * 126.03863 * 269.97786 * 3 2 1 5 5 C 1.30843 * 108.20217 * 179.74614 * 4 3 2 6 6 C 1.50700 * 125.89624 * 180.26106 * 5 4 3 7 7 C 1.39868 * 108.20230 * 0.43566 * 5 4 3 8 8 S 1.76204 * 126.03811 * 179.82170 * 7 5 4 9 9 O 1.42101 * 106.40082 * 156.15030 * 8 7 5 10 10 O 1.42101 * 106.40150 * 23.23403 * 8 7 5 11 11 N 1.65600 * 107.21983 * 269.69175 * 8 7 5 12 12 C 1.36937 * 120.00027 * 270.00223 * 11 8 7 13 13 H 1.08004 * 120.00041 * 129.54777 * 12 11 8 14 14 C 1.38809 * 120.00014 * 309.55549 * 12 11 8 15 15 N 1.31625 * 119.99493 * 335.42926 * 14 12 11 16 16 Si 1.86797 * 120.00135 * 155.43289 * 14 12 11 17 17 H 1.48492 * 109.47608 * 59.99683 * 16 14 12 18 18 H 1.48506 * 109.46921 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47251 * 299.99218 * 16 14 12 20 20 C 1.46500 * 119.99851 * 89.99437 * 11 8 7 21 21 C 1.54962 * 110.91749 * 127.39563 * 20 11 8 22 22 C 1.54269 * 104.15783 * 156.29662 * 21 20 11 23 23 C 1.53866 * 106.64294 * 336.44642 * 22 21 20 24 24 C 1.54266 * 106.59821 * 359.97438 * 23 22 21 25 25 C 1.34947 * 126.03600 * 90.00637 * 3 2 1 26 26 C 1.50701 * 126.12697 * 359.95623 * 25 3 2 27 27 H 1.09001 * 109.47090 * 59.99815 * 1 2 3 28 28 H 1.09004 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46850 * 299.99576 * 1 2 3 30 30 H 1.09000 * 109.46850 * 240.00424 * 2 1 3 31 31 H 1.08999 * 109.47370 * 120.00645 * 2 1 3 32 32 H 1.09000 * 109.46942 * 270.20573 * 6 5 4 33 33 H 1.08996 * 109.47262 * 30.20704 * 6 5 4 34 34 H 1.09003 * 109.46996 * 150.20722 * 6 5 4 35 35 H 0.96999 * 119.99285 * 180.02562 * 15 14 12 36 36 H 1.08996 * 110.67340 * 4.09385 * 20 11 8 37 37 H 1.09004 * 110.47716 * 37.64697 * 21 20 11 38 38 H 1.09003 * 110.53426 * 274.97332 * 21 20 11 39 39 H 1.09001 * 110.02917 * 217.13550 * 22 21 20 40 40 H 1.09001 * 110.03047 * 95.76062 * 22 21 20 41 41 H 1.09002 * 110.03375 * 119.25717 * 23 22 21 42 42 H 1.08994 * 110.03582 * 240.64355 * 23 22 21 43 43 H 1.08994 * 110.49136 * 142.28901 * 24 23 22 44 44 H 1.09005 * 110.48466 * 264.79870 * 24 23 22 45 45 H 1.09006 * 109.46987 * 270.02611 * 26 25 3 46 46 H 1.09000 * 109.47238 * 30.02067 * 26 25 3 47 47 H 1.08994 * 109.47399 * 150.02472 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2934 2.1581 -1.1327 5 6 2.7032 3.3343 -0.7320 6 6 3.1014 4.4823 -1.6235 7 6 2.7118 3.3408 0.6667 8 16 3.1892 4.6903 1.6942 9 8 2.5414 4.4923 2.9433 10 8 3.0279 5.8662 0.9128 11 7 4.8132 4.5380 1.9803 12 6 5.2538 3.8232 3.0619 13 1 6.0059 3.0587 2.9340 14 6 4.7336 4.0809 4.3228 15 7 4.2174 5.2612 4.5930 16 14 4.7664 2.7529 5.6361 17 1 6.1719 2.3546 5.9024 18 1 4.1556 3.2762 6.8845 19 1 3.9979 1.5724 5.1656 20 6 5.7784 5.1680 1.0760 21 6 6.7807 6.0492 1.8636 22 6 8.0189 6.1241 0.9464 23 6 7.9652 4.8880 0.0317 24 6 6.6962 4.1037 0.4248 25 6 2.2831 2.1297 1.0912 26 6 2.1285 1.6947 2.5258 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.1672 4.4192 -1.8427 33 1 2.5355 4.4331 -2.5537 34 1 2.8894 5.4248 -1.1186 35 1 3.8543 5.4414 5.4742 36 1 5.2656 5.7544 0.3137 37 1 7.0372 5.5795 2.8132 38 1 6.3674 7.0443 2.0284 39 1 8.9291 6.1057 1.5459 40 1 7.9852 7.0339 0.3471 41 1 7.9044 5.1978 -1.0115 42 1 8.8497 4.2701 0.1865 43 1 6.2206 3.6795 -0.4594 44 1 6.9397 3.3179 1.1400 45 1 1.1223 1.9326 2.8712 46 1 2.2931 0.6197 2.5993 47 1 2.8580 2.2172 3.1446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266165413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:13 Heat of formation + Delta-G solvation = -7.766260 kcal Electronic energy + Delta-G solvation = -30587.393126 eV Core-core repulsion = 26705.587963 eV Total energy + Delta-G solvation = -3881.805163 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.81551 -37.69787 -35.68896 -34.63720 -34.15638 -33.83368 -31.96931 -31.27980 -30.43815 -27.90490 -27.27510 -26.71498 -26.52428 -24.19612 -23.13586 -20.47344 -19.68598 -19.50946 -18.99991 -18.58760 -17.07576 -16.13428 -15.90125 -15.42422 -14.96593 -14.91331 -14.66075 -14.26219 -14.15329 -13.56666 -13.31911 -13.06433 -12.86574 -12.75305 -12.62589 -12.55216 -12.15533 -12.06245 -11.99766 -11.79040 -11.66053 -11.48882 -11.40735 -11.28761 -10.99145 -10.70450 -10.62659 -10.50985 -10.35630 -10.33619 -10.21719 -10.04950 -10.01095 -9.71419 -9.54556 -9.41103 -8.64638 -8.61549 -8.32450 -7.48692 -6.40768 -4.04885 2.09058 2.24639 2.82351 2.97106 3.22666 3.27042 3.29462 4.19661 4.58749 4.83225 4.91960 4.98019 5.01772 5.09932 5.19852 5.34788 5.38314 5.44224 5.47816 5.51206 5.57494 5.64474 5.73479 5.90895 5.95677 6.00335 6.07772 6.14936 6.18269 6.25507 6.33365 6.34375 6.39190 6.50874 6.52975 6.55819 6.67619 6.73207 6.74948 6.96115 7.10913 7.12261 7.25490 7.42277 7.53895 7.75401 8.08673 8.36537 9.04283 9.49978 10.66226 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010365 B = 0.006549 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.689059 B = 4274.391472 C = 5672.817483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 N -0.376 5.376 4 N -0.316 5.316 5 C 0.150 3.850 6 C -0.101 4.101 7 C -0.799 4.799 8 S 2.616 3.384 9 O -0.951 6.951 10 O -1.014 7.014 11 N -0.813 5.813 12 C -0.294 4.294 13 H 0.077 0.923 14 C 0.067 3.933 15 N -0.785 5.785 16 Si 0.907 3.093 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.268 1.268 20 C 0.155 3.845 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.120 4.120 24 C -0.136 4.136 25 C 0.199 3.801 26 C -0.112 4.112 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.276 0.724 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 -6.987 -5.606 8.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.156 5.156 4 N -0.137 5.137 5 C -0.018 4.018 6 C -0.159 4.159 7 C -0.889 4.889 8 S 2.713 3.287 9 O -0.940 6.940 10 O -1.004 7.004 11 N -0.637 5.637 12 C -0.438 4.438 13 H 0.095 0.905 14 C -0.150 4.150 15 N -0.419 5.419 16 Si 0.733 3.267 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.193 1.193 20 C 0.046 3.954 21 C -0.153 4.153 22 C -0.162 4.162 23 C -0.158 4.158 24 C -0.175 4.175 25 C 0.068 3.932 26 C -0.170 4.170 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.083 0.917 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.739 -7.130 -6.394 9.606 hybrid contribution 0.032 -0.998 0.817 1.290 sum -0.708 -8.128 -5.577 9.883 Atomic orbital electron populations 1.22184 0.94560 1.02710 1.03322 1.21612 0.95094 0.78822 1.04116 1.48947 1.51257 1.11665 1.03752 1.77149 1.24959 1.04243 1.07325 1.21779 0.94560 0.93401 0.92086 1.20665 1.01608 0.95619 0.98014 1.32717 1.27708 1.20017 1.08414 1.07747 0.74983 0.73701 0.72294 1.93401 1.75223 1.85604 1.39769 1.93241 1.86937 1.47617 1.72560 1.52627 1.19522 1.61248 1.30319 1.18704 1.25458 1.16209 0.83392 0.90528 1.25578 0.95961 0.95342 0.98167 1.69873 1.30097 1.19373 1.22606 0.86358 0.78341 0.81773 0.80195 1.20042 1.20795 1.19326 1.21646 0.90057 0.92196 0.91481 1.22500 0.93599 0.99651 0.99554 1.22114 0.98882 0.97325 0.97882 1.22040 0.98079 0.96952 0.98711 1.22724 0.95562 0.99307 0.99912 1.20846 0.91938 0.89729 0.90668 1.20908 1.05703 1.01417 0.88979 0.91740 0.90709 0.91892 0.89008 0.89033 0.90423 0.91316 0.86987 0.91310 0.90128 0.89428 0.92402 0.92602 0.92749 0.92744 0.92714 0.93053 0.90579 0.89604 0.91670 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 10.24 37.16 0.38 -1.47 16 2 C 0.13 1.58 6.96 -4.04 -0.03 1.55 16 3 N -0.38 -6.74 3.61 -57.14 -0.21 -6.95 16 4 N -0.32 -6.27 12.58 33.67 0.42 -5.85 16 5 C 0.15 3.11 7.21 -82.40 -0.59 2.51 16 6 C -0.10 -1.80 10.14 36.01 0.37 -1.43 16 7 C -0.80 -17.63 6.17 -40.02 -0.25 -17.88 16 8 S 2.62 64.16 5.40 -107.50 -0.58 63.58 16 9 O -0.95 -25.29 11.98 -57.17 -0.69 -25.97 16 10 O -1.01 -26.13 13.93 -57.17 -0.80 -26.93 16 11 N -0.81 -18.87 2.75 -51.46 -0.14 -19.01 16 12 C -0.29 -6.95 7.41 -15.06 -0.11 -7.06 16 13 H 0.08 1.74 6.93 -52.48 -0.36 1.38 16 14 C 0.07 1.64 3.99 -17.43 -0.07 1.57 16 15 N -0.79 -20.74 11.72 55.49 0.65 -20.09 16 16 Si 0.91 19.08 29.07 -169.99 -4.94 14.13 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 20 C 0.15 3.17 3.31 -65.90 -0.22 2.95 16 21 C -0.11 -2.19 6.35 -25.03 -0.16 -2.35 16 22 C -0.12 -1.91 6.80 -25.62 -0.17 -2.08 16 23 C -0.12 -1.78 6.80 -25.62 -0.17 -1.95 16 24 C -0.14 -2.39 6.39 -25.07 -0.16 -2.55 16 25 C 0.20 3.96 6.92 -82.27 -0.57 3.39 16 26 C -0.11 -2.01 9.15 36.01 0.33 -1.68 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 0.96 7.05 -51.93 -0.37 0.60 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.11 2.17 5.66 -51.93 -0.29 1.88 16 35 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.08 1.67 6.95 -51.93 -0.36 1.31 16 37 H 0.09 1.84 7.08 -51.93 -0.37 1.47 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.08 1.41 6.72 -51.93 -0.35 1.06 16 45 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.06 0.93 7.08 -51.93 -0.37 0.56 16 47 H 0.12 2.46 6.13 -51.93 -0.32 2.14 16 LS Contribution 377.96 15.07 5.70 5.70 Total: -1.00 -30.73 377.96 -9.43 -40.16 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.42 Total: 7.71 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -1.43 Total: -26.48 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.73 Total: -51.90 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -1.48 Total: -52.90 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.94 Total: 14.13 kcal Atomic # 16 Polarization: 64.16 SS G_CDS: -0.58 Total: 63.58 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.73 -9.43 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266165413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.391 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds