Wall clock time and date at job start Wed Apr 1 2020 00:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.46923 * 2 1 4 4 N 1.40083 * 126.03863 * 269.97786 * 3 2 1 5 5 C 1.30843 * 108.20217 * 179.74614 * 4 3 2 6 6 C 1.50700 * 125.89624 * 180.26106 * 5 4 3 7 7 C 1.39868 * 108.20230 * 0.43566 * 5 4 3 8 8 S 1.76204 * 126.03811 * 179.82170 * 7 5 4 9 9 O 1.42101 * 106.40082 * 156.15030 * 8 7 5 10 10 O 1.42101 * 106.40150 * 23.23403 * 8 7 5 11 11 N 1.65600 * 107.21983 * 269.69175 * 8 7 5 12 12 C 1.36937 * 120.00027 * 270.00223 * 11 8 7 13 13 H 1.08004 * 120.00041 * 129.54777 * 12 11 8 14 14 C 1.38809 * 120.00014 * 309.55549 * 12 11 8 15 15 N 1.31625 * 119.99493 * 335.42926 * 14 12 11 16 16 Si 1.86797 * 120.00135 * 155.43289 * 14 12 11 17 17 H 1.48492 * 109.47608 * 59.99683 * 16 14 12 18 18 H 1.48506 * 109.46921 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47251 * 299.99218 * 16 14 12 20 20 C 1.46500 * 119.99851 * 89.99437 * 11 8 7 21 21 C 1.54962 * 110.91749 * 127.39563 * 20 11 8 22 22 C 1.54269 * 104.15783 * 156.29662 * 21 20 11 23 23 C 1.53866 * 106.64294 * 336.44642 * 22 21 20 24 24 C 1.54266 * 106.59821 * 359.97438 * 23 22 21 25 25 C 1.34947 * 126.03600 * 90.00637 * 3 2 1 26 26 C 1.50701 * 126.12697 * 359.95623 * 25 3 2 27 27 H 1.09001 * 109.47090 * 59.99815 * 1 2 3 28 28 H 1.09004 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46850 * 299.99576 * 1 2 3 30 30 H 1.09000 * 109.46850 * 240.00424 * 2 1 3 31 31 H 1.08999 * 109.47370 * 120.00645 * 2 1 3 32 32 H 1.09000 * 109.46942 * 270.20573 * 6 5 4 33 33 H 1.08996 * 109.47262 * 30.20704 * 6 5 4 34 34 H 1.09003 * 109.46996 * 150.20722 * 6 5 4 35 35 H 0.96999 * 119.99285 * 180.02562 * 15 14 12 36 36 H 1.08996 * 110.67340 * 4.09385 * 20 11 8 37 37 H 1.09004 * 110.47716 * 37.64697 * 21 20 11 38 38 H 1.09003 * 110.53426 * 274.97332 * 21 20 11 39 39 H 1.09001 * 110.02917 * 217.13550 * 22 21 20 40 40 H 1.09001 * 110.03047 * 95.76062 * 22 21 20 41 41 H 1.09002 * 110.03375 * 119.25717 * 23 22 21 42 42 H 1.08994 * 110.03582 * 240.64355 * 23 22 21 43 43 H 1.08994 * 110.49136 * 142.28901 * 24 23 22 44 44 H 1.09005 * 110.48466 * 264.79870 * 24 23 22 45 45 H 1.09006 * 109.46987 * 270.02611 * 26 25 3 46 46 H 1.09000 * 109.47238 * 30.02067 * 26 25 3 47 47 H 1.08994 * 109.47399 * 150.02472 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2934 2.1581 -1.1327 5 6 2.7032 3.3343 -0.7320 6 6 3.1014 4.4823 -1.6235 7 6 2.7118 3.3408 0.6667 8 16 3.1892 4.6903 1.6942 9 8 2.5414 4.4923 2.9433 10 8 3.0279 5.8662 0.9128 11 7 4.8132 4.5380 1.9803 12 6 5.2538 3.8232 3.0619 13 1 6.0059 3.0587 2.9340 14 6 4.7336 4.0809 4.3228 15 7 4.2174 5.2612 4.5930 16 14 4.7664 2.7529 5.6361 17 1 6.1719 2.3546 5.9024 18 1 4.1556 3.2762 6.8845 19 1 3.9979 1.5724 5.1656 20 6 5.7784 5.1680 1.0760 21 6 6.7807 6.0492 1.8636 22 6 8.0189 6.1241 0.9464 23 6 7.9652 4.8880 0.0317 24 6 6.6962 4.1037 0.4248 25 6 2.2831 2.1297 1.0912 26 6 2.1285 1.6947 2.5258 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 4.1672 4.4192 -1.8427 33 1 2.5355 4.4331 -2.5537 34 1 2.8894 5.4248 -1.1186 35 1 3.8543 5.4414 5.4742 36 1 5.2656 5.7544 0.3137 37 1 7.0372 5.5795 2.8132 38 1 6.3674 7.0443 2.0284 39 1 8.9291 6.1057 1.5459 40 1 7.9852 7.0339 0.3471 41 1 7.9044 5.1978 -1.0115 42 1 8.8497 4.2701 0.1865 43 1 6.2206 3.6795 -0.4594 44 1 6.9397 3.3179 1.1400 45 1 1.1223 1.9326 2.8712 46 1 2.2931 0.6197 2.5993 47 1 2.8580 2.2172 3.1446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266165413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:12 Heat of formation + Delta-G solvation = -26.516510 kcal Electronic energy + Delta-G solvation = -30588.206198 eV Core-core repulsion = 26705.587963 eV Total energy + Delta-G solvation = -3882.618235 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.29263 -39.21642 -37.60517 -36.04115 -35.87814 -35.61216 -33.37753 -33.05495 -31.75693 -29.31926 -28.62501 -28.28580 -27.97345 -25.95829 -24.27164 -21.99297 -21.29580 -20.85091 -20.45087 -20.34081 -18.75486 -17.74383 -17.54811 -17.04571 -16.55949 -16.35879 -16.17701 -15.88851 -15.39594 -15.17869 -14.76916 -14.36479 -14.29920 -14.14798 -14.01196 -13.98468 -13.70962 -13.52010 -13.46833 -13.16101 -13.06537 -12.98280 -12.84495 -12.72408 -12.44023 -12.26693 -12.16257 -12.06269 -12.01997 -11.90640 -11.82570 -11.74349 -11.65654 -11.22028 -11.09365 -11.02997 -10.43951 -10.08221 -9.88791 -9.27526 -8.25602 -5.93495 0.31840 0.69811 1.36160 1.51531 1.54691 1.58223 1.64015 2.45686 3.07029 3.17529 3.44350 3.55022 3.66461 3.92310 4.00246 4.01021 4.04848 4.08022 4.10333 4.21549 4.27705 4.49460 4.60208 4.63020 4.65892 4.68481 4.70551 4.81645 4.86030 4.94277 4.94903 4.97606 5.04801 5.07881 5.15666 5.19474 5.24295 5.28578 5.32937 5.48480 5.58469 5.62156 5.66438 5.73654 6.04289 6.09426 6.48958 6.56860 7.21804 7.67174 8.81393 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010365 B = 0.006549 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.689059 B = 4274.391472 C = 5672.817483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.365 5.365 4 N -0.323 5.323 5 C 0.137 3.863 6 C -0.101 4.101 7 C -0.830 4.830 8 S 2.619 3.381 9 O -0.980 6.980 10 O -1.039 7.039 11 N -0.822 5.822 12 C -0.292 4.292 13 H 0.085 0.915 14 C 0.030 3.970 15 N -0.830 5.830 16 Si 0.953 3.047 17 H -0.260 1.260 18 H -0.291 1.291 19 H -0.251 1.251 20 C 0.141 3.859 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.112 4.112 24 C -0.128 4.128 25 C 0.197 3.803 26 C -0.113 4.113 27 H 0.047 0.953 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.271 0.729 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.106 0.894 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.341 -9.868 -6.748 12.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.010 4.010 3 N -0.145 5.145 4 N -0.144 5.144 5 C -0.031 4.031 6 C -0.159 4.159 7 C -0.924 4.924 8 S 2.719 3.281 9 O -0.969 6.969 10 O -1.029 7.029 11 N -0.647 5.647 12 C -0.436 4.436 13 H 0.103 0.897 14 C -0.184 4.184 15 N -0.466 5.466 16 Si 0.776 3.224 17 H -0.185 1.185 18 H -0.217 1.217 19 H -0.175 1.175 20 C 0.034 3.966 21 C -0.154 4.154 22 C -0.154 4.154 23 C -0.150 4.150 24 C -0.168 4.168 25 C 0.064 3.936 26 C -0.171 4.171 27 H 0.067 0.933 28 H 0.130 0.870 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.137 0.863 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.112 0.888 46 H 0.125 0.875 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.176 -10.016 -7.544 12.540 hybrid contribution -0.320 -0.167 1.087 1.145 sum -0.144 -10.183 -6.457 12.058 Atomic orbital electron populations 1.22164 0.93148 1.04763 1.02085 1.22196 0.96276 0.76171 1.06324 1.49341 1.49702 1.12958 1.02533 1.77079 1.24899 1.04094 1.08320 1.22106 0.94830 0.94349 0.91849 1.20699 1.03059 0.93807 0.98354 1.32346 1.30552 1.20451 1.09033 1.07108 0.75273 0.73787 0.71888 1.93356 1.76036 1.86185 1.41344 1.93204 1.87406 1.49320 1.72941 1.52583 1.19335 1.61782 1.30965 1.18915 1.25205 1.16016 0.83434 0.89745 1.26352 0.95356 0.96636 1.00040 1.69986 1.32334 1.21431 1.22838 0.85639 0.79212 0.80034 0.77507 1.18459 1.21723 1.17461 1.21896 0.90083 0.93385 0.91271 1.22448 0.95366 0.98083 0.99477 1.22075 0.97203 0.98568 0.97520 1.22032 0.97136 0.96298 0.99575 1.22631 0.96272 0.98406 0.99444 1.21067 0.91129 0.89439 0.91943 1.20952 1.05272 1.03668 0.87211 0.93343 0.86986 0.92745 0.87386 0.86290 0.88794 0.88974 0.89083 0.91906 0.91008 0.91642 0.94283 0.91001 0.91168 0.90715 0.90721 0.92632 0.91611 0.88808 0.87545 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.24 71.98 0.74 -2.31 16 2 C 0.11 2.38 6.96 86.38 0.60 2.98 16 3 N -0.37 -12.36 3.61 -334.70 -1.21 -13.57 16 4 N -0.32 -12.36 12.58 -47.38 -0.60 -12.96 16 5 C 0.14 5.62 7.21 43.10 0.31 5.93 16 6 C -0.10 -3.58 10.14 71.24 0.72 -2.86 16 7 C -0.83 -36.91 6.17 21.99 0.14 -36.77 16 8 S 2.62 133.11 5.40 -56.49 -0.31 132.81 16 9 O -0.98 -54.21 11.98 -128.00 -1.53 -55.75 16 10 O -1.04 -56.13 13.93 -128.00 -1.78 -57.92 16 11 N -0.82 -39.22 2.75 -316.73 -0.87 -40.09 16 12 C -0.29 -14.07 7.41 84.03 0.62 -13.45 16 13 H 0.09 3.84 6.93 -2.91 -0.02 3.82 16 14 C 0.03 1.47 3.99 84.86 0.34 1.81 16 15 N -0.83 -45.75 11.72 21.65 0.25 -45.49 16 16 Si 0.95 38.88 29.07 68.60 1.99 40.88 16 17 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 18 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 20 C 0.14 5.89 3.31 46.31 0.15 6.04 16 21 C -0.11 -4.49 6.35 31.70 0.20 -4.29 16 22 C -0.12 -3.35 6.80 31.32 0.21 -3.14 16 23 C -0.11 -3.03 6.80 31.32 0.21 -2.82 16 24 C -0.13 -4.39 6.39 31.67 0.20 -4.18 16 25 C 0.20 7.66 6.92 41.40 0.29 7.95 16 26 C -0.11 -3.88 9.15 71.24 0.65 -3.23 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 31 H 0.12 1.95 7.05 -2.39 -0.02 1.94 16 32 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 33 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.09 3.64 5.66 -2.39 -0.01 3.63 16 35 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.07 3.07 6.95 -2.39 -0.02 3.05 16 37 H 0.06 2.84 7.08 -2.38 -0.02 2.82 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 2.37 6.72 -2.38 -0.02 2.35 16 45 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 46 H 0.11 2.66 7.08 -2.39 -0.02 2.65 16 47 H 0.09 3.70 6.13 -2.39 -0.01 3.68 16 Total: -1.00 -69.86 377.96 2.30 -67.56 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.97 Total: 32.87 kcal Atomic # 6 Polarization: -53.73 SS G_CDS: 5.39 Total: -48.34 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -2.42 Total: -112.10 kcal Atomic # 8 Polarization: -110.35 SS G_CDS: -3.32 Total: -113.66 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 1.99 Total: 40.88 kcal Atomic # 16 Polarization: 133.11 SS G_CDS: -0.31 Total: 132.81 kcal Total: -69.86 2.30 -67.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266165413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.041 kcal (2) G-P(sol) polarization free energy of solvation -69.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds