Wall clock time and date at job start Wed Apr 1 2020 01:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47224 * 2 1 4 4 C 1.46899 * 111.00190 * 294.92924 * 3 2 1 5 5 C 1.50695 * 109.47242 * 288.41835 * 4 3 2 6 6 H 1.07998 * 120.00229 * 2.24329 * 5 4 3 7 7 C 1.37882 * 119.99864 * 182.24124 * 5 4 3 8 8 N 1.31513 * 119.99757 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99816 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46870 * 60.00776 * 9 7 5 11 11 H 1.48506 * 109.46902 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47370 * 300.00258 * 9 7 5 13 13 C 1.46895 * 110.99628 * 58.88820 * 3 2 1 14 14 C 1.50703 * 109.47347 * 66.04469 * 13 3 2 15 15 N 1.30433 * 126.43227 * 263.10933 * 14 13 3 16 16 N 1.28522 * 110.11337 * 179.97438 * 15 14 13 17 17 C 1.31481 * 109.90650 * 0.02562 * 16 15 14 18 18 N 1.36470 * 106.76299 * 359.97438 * 17 16 15 19 19 C 1.38901 * 120.93887 * 179.97438 * 18 17 16 20 20 C 1.38662 * 121.28608 * 179.97438 * 19 18 17 21 21 C 1.38060 * 119.87008 * 180.02562 * 20 19 18 22 22 C 1.38616 * 120.58801 * 0.02562 * 21 20 19 23 23 C 1.37900 * 120.35493 * 359.97438 * 22 21 20 24 24 C 1.39351 * 119.60779 * 0.02562 * 23 22 21 25 25 C 1.47420 * 121.35098 * 179.97438 * 24 23 22 26 26 O 1.21632 * 120.57886 * 0.04222 * 25 24 23 27 27 N 1.34945 * 118.85473 * 180.02562 * 25 24 23 28 28 C 1.46498 * 119.50871 * 179.97438 * 27 25 24 29 29 H 1.08996 * 109.47501 * 179.05818 * 1 2 3 30 30 H 1.09005 * 109.46673 * 299.06012 * 1 2 3 31 31 H 1.09003 * 109.47219 * 59.05237 * 1 2 3 32 32 H 1.09007 * 109.46796 * 240.00166 * 2 1 3 33 33 H 1.09001 * 109.46997 * 120.00838 * 2 1 3 34 34 H 1.08997 * 109.46886 * 48.41752 * 4 3 2 35 35 H 1.08992 * 109.46841 * 168.41574 * 4 3 2 36 36 H 0.97008 * 119.99410 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.47042 * 306.04144 * 13 3 2 38 38 H 1.09002 * 109.46821 * 186.04233 * 13 3 2 39 39 H 1.07994 * 120.06415 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.70608 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.82144 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.18929 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.47956 * 270.00519 * 28 27 25 44 44 H 1.09006 * 109.47082 * 30.00765 * 28 27 25 45 45 H 1.09001 * 109.47411 * 150.00042 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6502 2.0741 -1.2436 5 6 2.4727 1.5297 -2.3830 6 1 3.1715 0.7250 -2.2083 7 6 2.3331 2.0591 -3.6485 8 7 1.4825 3.0393 -3.8610 9 14 3.3532 1.3848 -5.0606 10 1 3.0557 -0.0589 -5.2409 11 1 3.0179 2.1181 -6.3077 12 1 4.7961 1.5586 -4.7562 13 6 1.5271 2.1175 1.1742 14 6 2.1264 1.5252 2.4236 15 7 1.5680 0.6463 3.2092 16 7 2.3570 0.3589 4.1822 17 6 3.4731 1.0450 4.0712 18 7 3.3560 1.8077 2.9457 19 6 4.3815 2.6560 2.5480 20 6 4.2704 3.4337 1.4054 21 6 5.3081 4.2665 1.0369 22 6 6.4638 4.3331 1.7993 23 6 6.5921 3.5670 2.9387 24 6 5.5518 2.7225 3.3213 25 6 5.6483 1.8864 4.5316 26 8 6.6456 1.9173 5.2272 27 7 4.6108 1.0863 4.8548 28 6 4.6916 0.2490 6.0542 29 1 -0.3634 -1.0275 -0.0169 30 1 -0.3633 0.4992 0.8984 31 1 -0.3634 0.5285 -0.8814 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 0.5922 1.9109 -1.4488 35 1 1.8391 3.1422 -1.1370 36 1 1.3846 3.4119 -4.7513 37 1 0.4407 2.0409 1.2207 38 1 1.8143 3.1660 1.0951 39 1 3.3743 3.3875 0.8045 40 1 5.2186 4.8714 0.1467 41 1 7.2681 4.9885 1.4993 42 1 7.4940 3.6207 3.5305 43 1 5.1232 -0.7176 5.7943 44 1 5.3198 0.7392 6.7980 45 1 3.6918 0.1023 6.4630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266900160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:30 Heat of formation + Delta-G solvation = 109.738542 kcal Electronic energy + Delta-G solvation = -30455.439679 eV Core-core repulsion = 26475.578706 eV Total energy + Delta-G solvation = -3979.860973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.68071 -40.72066 -38.97319 -37.54864 -36.48325 -35.00990 -32.82266 -31.93064 -30.84181 -30.13464 -29.53094 -27.91148 -27.57414 -25.36051 -24.08655 -23.79395 -23.11991 -23.07030 -20.94231 -19.86510 -19.54209 -18.99967 -17.40391 -17.23638 -16.65327 -16.32544 -15.94678 -15.59757 -15.19783 -14.96052 -14.83053 -14.50624 -14.33400 -14.05748 -13.88671 -13.86641 -13.09550 -12.97702 -12.70341 -12.60733 -12.23953 -12.04895 -11.87047 -11.69179 -11.48753 -11.34657 -11.27614 -11.16541 -10.95293 -10.83570 -10.80052 -10.63319 -10.30979 -10.14555 -9.90893 -9.42528 -9.39272 -8.80376 -8.54794 -8.43808 -7.49246 -6.14064 -4.15286 0.32012 0.70190 1.63226 1.72774 2.32671 2.36286 2.80550 3.26392 3.31288 3.34256 3.54480 3.76455 3.95931 4.29542 4.38295 4.52233 4.58258 4.80312 4.92290 4.93834 4.98701 5.10035 5.13654 5.22554 5.23776 5.40353 5.47939 5.49799 5.66179 5.76715 5.80013 5.89876 5.96454 5.98285 6.07439 6.09612 6.18402 6.34421 6.43812 6.49869 6.56154 6.81297 6.87396 7.03569 7.25001 7.40472 7.62907 7.85697 7.98949 8.33535 8.53315 8.91198 9.49212 10.96206 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012294 B = 0.004036 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.997512 B = 6936.215804 C = 8469.966445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.060 3.940 3 N -0.531 5.531 4 C 0.190 3.810 5 C -0.506 4.506 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.120 3.880 14 C 0.224 3.776 15 N -0.258 5.258 16 N -0.294 5.294 17 C 0.396 3.604 18 N -0.426 5.426 19 C 0.173 3.827 20 C -0.121 4.121 21 C -0.053 4.053 22 C -0.133 4.133 23 C -0.033 4.033 24 C -0.167 4.167 25 C 0.569 3.431 26 O -0.505 6.505 27 N -0.509 5.509 28 C 0.083 3.917 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.006 0.994 35 H 0.030 0.970 36 H 0.263 0.737 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.162 0.838 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 2.333 14.195 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.068 4.068 3 N -0.256 5.256 4 C 0.066 3.934 5 C -0.544 4.544 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.010 4.010 14 C -0.042 4.042 15 N -0.095 5.095 16 N -0.140 5.140 17 C 0.043 3.957 18 N -0.116 5.116 19 C 0.077 3.923 20 C -0.141 4.141 21 C -0.072 4.072 22 C -0.151 4.151 23 C -0.053 4.053 24 C -0.172 4.172 25 C 0.360 3.640 26 O -0.378 6.378 27 N -0.238 5.238 28 C -0.057 4.057 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.024 0.976 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.179 0.821 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.164 0.836 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.223 1.430 15.071 16.368 hybrid contribution 0.532 0.378 -1.423 1.566 sum 6.755 1.809 13.648 15.335 Atomic orbital electron populations 1.22348 0.98628 1.01640 1.01925 1.21983 0.92757 0.90373 1.01686 1.62489 1.58636 1.02442 1.02070 1.19845 0.95698 0.93820 0.84035 1.21022 1.22509 1.18935 0.91973 0.91990 1.24927 0.95547 0.95063 0.98712 1.69930 1.35757 1.25552 1.22407 0.86591 0.80608 0.79087 0.81327 1.20273 1.21342 1.20217 1.20754 0.98212 0.97300 0.84716 1.24974 0.81263 0.98583 0.99373 1.74231 1.22615 1.11926 1.00773 1.74648 0.97919 1.22117 1.19310 1.21338 0.92101 0.95436 0.86852 1.43543 1.14663 1.32680 1.20748 1.17826 0.86283 0.92291 0.95937 1.21431 1.02474 0.95610 0.94560 1.21458 0.91602 0.95530 0.98576 1.21321 0.98674 1.00221 0.94898 1.21010 0.96685 0.91884 0.95686 1.19442 0.95852 1.04451 0.97500 1.18092 0.81806 0.78889 0.85210 1.90837 1.28593 1.66031 1.52378 1.44302 1.11830 1.42220 1.25495 1.21991 1.04809 0.94319 0.84630 0.93026 0.92881 0.91584 0.89862 0.92848 0.97599 0.95208 0.92778 0.90363 0.88882 0.82073 0.83643 0.84221 0.83576 0.90802 0.88880 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 9.26 37.16 0.34 -2.84 16 2 C 0.06 1.13 5.73 -3.82 -0.02 1.10 16 3 N -0.53 -10.14 4.39 -237.52 -1.04 -11.18 16 4 C 0.19 4.30 4.61 -4.98 -0.02 4.27 16 5 C -0.51 -12.88 8.55 -34.44 -0.29 -13.18 16 6 H 0.06 1.61 7.43 -52.49 -0.39 1.22 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -24.53 13.29 55.43 0.74 -23.79 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 C 0.12 1.96 4.18 -4.98 -0.02 1.94 16 14 C 0.22 3.74 6.60 -154.09 -1.02 2.72 16 15 N -0.26 -4.54 11.87 32.97 0.39 -4.15 16 16 N -0.29 -4.99 11.99 30.29 0.36 -4.63 16 17 C 0.40 6.27 8.29 -319.06 -2.64 3.63 16 18 N -0.43 -6.83 3.01 -58.28 -0.18 -7.01 16 19 C 0.17 2.54 6.65 -83.67 -0.56 1.98 16 20 C -0.12 -1.66 9.45 -39.49 -0.37 -2.04 16 21 C -0.05 -0.58 10.02 -39.51 -0.40 -0.98 16 22 C -0.13 -1.26 10.03 -39.57 -0.40 -1.66 16 23 C -0.03 -0.36 9.65 -39.29 -0.38 -0.74 16 24 C -0.17 -2.27 5.88 -104.92 -0.62 -2.88 16 25 C 0.57 8.11 7.65 -12.45 -0.10 8.01 16 26 O -0.50 -7.60 16.10 5.25 0.08 -7.52 16 27 N -0.51 -7.05 3.06 -125.29 -0.38 -7.43 16 28 C 0.08 0.86 10.35 59.85 0.62 1.48 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.86 6.31 -51.93 -0.33 0.53 16 31 H 0.07 1.23 6.27 -51.93 -0.33 0.90 16 32 H 0.08 1.69 7.10 -51.92 -0.37 1.32 16 33 H 0.05 1.00 7.07 -51.93 -0.37 0.63 16 34 H 0.01 0.15 5.97 -51.93 -0.31 -0.16 16 35 H 0.03 0.70 7.82 -51.93 -0.41 0.29 16 36 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.08 1.24 5.99 -51.93 -0.31 0.93 16 38 H 0.09 1.38 5.64 -51.93 -0.29 1.09 16 39 H 0.16 2.42 4.39 -52.49 -0.23 2.19 16 40 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.15 1.37 7.76 -52.48 -0.41 0.96 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.85 7.41 -51.93 -0.38 0.47 16 45 H 0.09 0.88 7.88 -51.93 -0.41 0.47 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -30.09 364.65 -10.87 -40.97 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.36 Total: 1.54 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -5.97 Total: 2.27 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.11 Total: -58.18 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.08 Total: -7.52 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.09 -10.87 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266900160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.707 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds