Wall clock time and date at job start Wed Apr 1 2020 01:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47224 * 2 1 4 4 C 1.46899 * 111.00190 * 294.92924 * 3 2 1 5 5 C 1.50695 * 109.47242 * 288.41835 * 4 3 2 6 6 H 1.07998 * 120.00229 * 2.24329 * 5 4 3 7 7 C 1.37882 * 119.99864 * 182.24124 * 5 4 3 8 8 N 1.31513 * 119.99757 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99816 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46870 * 60.00776 * 9 7 5 11 11 H 1.48506 * 109.46902 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47370 * 300.00258 * 9 7 5 13 13 C 1.46895 * 110.99628 * 58.88820 * 3 2 1 14 14 C 1.50703 * 109.47347 * 66.04469 * 13 3 2 15 15 N 1.30433 * 126.43227 * 263.10933 * 14 13 3 16 16 N 1.28522 * 110.11337 * 179.97438 * 15 14 13 17 17 C 1.31481 * 109.90650 * 0.02562 * 16 15 14 18 18 N 1.36470 * 106.76299 * 359.97438 * 17 16 15 19 19 C 1.38901 * 120.93887 * 179.97438 * 18 17 16 20 20 C 1.38662 * 121.28608 * 179.97438 * 19 18 17 21 21 C 1.38060 * 119.87008 * 180.02562 * 20 19 18 22 22 C 1.38616 * 120.58801 * 0.02562 * 21 20 19 23 23 C 1.37900 * 120.35493 * 359.97438 * 22 21 20 24 24 C 1.39351 * 119.60779 * 0.02562 * 23 22 21 25 25 C 1.47420 * 121.35098 * 179.97438 * 24 23 22 26 26 O 1.21632 * 120.57886 * 0.04222 * 25 24 23 27 27 N 1.34945 * 118.85473 * 180.02562 * 25 24 23 28 28 C 1.46498 * 119.50871 * 179.97438 * 27 25 24 29 29 H 1.08996 * 109.47501 * 179.05818 * 1 2 3 30 30 H 1.09005 * 109.46673 * 299.06012 * 1 2 3 31 31 H 1.09003 * 109.47219 * 59.05237 * 1 2 3 32 32 H 1.09007 * 109.46796 * 240.00166 * 2 1 3 33 33 H 1.09001 * 109.46997 * 120.00838 * 2 1 3 34 34 H 1.08997 * 109.46886 * 48.41752 * 4 3 2 35 35 H 1.08992 * 109.46841 * 168.41574 * 4 3 2 36 36 H 0.97008 * 119.99410 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.47042 * 306.04144 * 13 3 2 38 38 H 1.09002 * 109.46821 * 186.04233 * 13 3 2 39 39 H 1.07994 * 120.06415 * 359.97438 * 20 19 18 40 40 H 1.07999 * 119.70608 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.82144 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.18929 * 179.97438 * 23 22 21 43 43 H 1.08996 * 109.47956 * 270.00519 * 28 27 25 44 44 H 1.09006 * 109.47082 * 30.00765 * 28 27 25 45 45 H 1.09001 * 109.47411 * 150.00042 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6502 2.0741 -1.2436 5 6 2.4727 1.5297 -2.3830 6 1 3.1715 0.7250 -2.2083 7 6 2.3331 2.0591 -3.6485 8 7 1.4825 3.0393 -3.8610 9 14 3.3532 1.3848 -5.0606 10 1 3.0557 -0.0589 -5.2409 11 1 3.0179 2.1181 -6.3077 12 1 4.7961 1.5586 -4.7562 13 6 1.5271 2.1175 1.1742 14 6 2.1264 1.5252 2.4236 15 7 1.5680 0.6463 3.2092 16 7 2.3570 0.3589 4.1822 17 6 3.4731 1.0450 4.0712 18 7 3.3560 1.8077 2.9457 19 6 4.3815 2.6560 2.5480 20 6 4.2704 3.4337 1.4054 21 6 5.3081 4.2665 1.0369 22 6 6.4638 4.3331 1.7993 23 6 6.5921 3.5670 2.9387 24 6 5.5518 2.7225 3.3213 25 6 5.6483 1.8864 4.5316 26 8 6.6456 1.9173 5.2272 27 7 4.6108 1.0863 4.8548 28 6 4.6916 0.2490 6.0542 29 1 -0.3634 -1.0275 -0.0169 30 1 -0.3633 0.4992 0.8984 31 1 -0.3634 0.5285 -0.8814 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5140 0.8899 34 1 0.5922 1.9109 -1.4488 35 1 1.8391 3.1422 -1.1370 36 1 1.3846 3.4119 -4.7513 37 1 0.4407 2.0409 1.2207 38 1 1.8143 3.1660 1.0951 39 1 3.3743 3.3875 0.8045 40 1 5.2186 4.8714 0.1467 41 1 7.2681 4.9885 1.4993 42 1 7.4940 3.6207 3.5305 43 1 5.1232 -0.7176 5.7943 44 1 5.3198 0.7392 6.7980 45 1 3.6918 0.1023 6.4630 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266900160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:29 Heat of formation + Delta-G solvation = 95.141012 kcal Electronic energy + Delta-G solvation = -30456.072676 eV Core-core repulsion = 26475.578706 eV Total energy + Delta-G solvation = -3980.493969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.89247 -41.80404 -39.98373 -39.06328 -37.60836 -36.11137 -34.75681 -32.99609 -32.08243 -31.15900 -31.08585 -29.22582 -28.78885 -26.89345 -25.17991 -25.01411 -24.72986 -24.14865 -22.23924 -21.17872 -20.71329 -20.12332 -18.50278 -18.42546 -18.32438 -17.66446 -17.10974 -16.92920 -16.57011 -16.33372 -15.94964 -15.83780 -15.54827 -15.35751 -15.03436 -14.84086 -14.65509 -14.15543 -13.99503 -13.66521 -13.48197 -13.34385 -13.17264 -13.08021 -12.86663 -12.78088 -12.58714 -12.57406 -12.44925 -12.35701 -12.09895 -11.95057 -11.88929 -11.59743 -11.40090 -11.32812 -10.53625 -10.35818 -9.84110 -9.60877 -9.08085 -8.14243 -6.21153 -0.68474 -0.31956 0.52010 0.62513 1.18433 1.25502 1.45401 1.46406 1.53822 1.63209 2.43983 2.58206 2.70015 2.83419 3.12003 3.19796 3.31005 3.52336 3.58505 3.77695 4.06831 4.11949 4.16900 4.20320 4.24152 4.33353 4.35066 4.39004 4.44106 4.55999 4.64367 4.66557 4.79555 4.83892 4.91359 4.98446 5.02983 5.11106 5.20762 5.26968 5.31607 5.33389 5.50761 5.58252 5.69742 5.76790 6.06374 6.25401 6.31974 6.52096 6.91273 7.26257 7.46920 8.95302 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012294 B = 0.004036 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.997512 B = 6936.215804 C = 8469.966445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.065 3.935 3 N -0.533 5.533 4 C 0.207 3.793 5 C -0.514 4.514 6 H 0.053 0.947 7 C 0.015 3.985 8 N -0.926 5.926 9 Si 0.953 3.047 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.127 3.873 14 C 0.218 3.782 15 N -0.273 5.273 16 N -0.309 5.309 17 C 0.398 3.602 18 N -0.428 5.428 19 C 0.147 3.853 20 C -0.137 4.137 21 C -0.051 4.051 22 C -0.112 4.112 23 C -0.029 4.029 24 C -0.181 4.181 25 C 0.567 3.433 26 O -0.515 6.515 27 N -0.510 5.510 28 C 0.078 3.922 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.054 0.946 34 H -0.012 1.012 35 H 0.020 0.980 36 H 0.263 0.737 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.144 0.856 40 H 0.164 0.836 41 H 0.181 0.819 42 H 0.166 0.834 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.192 2.935 14.432 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.063 4.063 3 N -0.258 5.258 4 C 0.082 3.918 5 C -0.553 4.553 6 H 0.072 0.928 7 C -0.183 4.183 8 N -0.567 5.567 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.195 1.195 13 C -0.003 4.003 14 C -0.049 4.049 15 N -0.111 5.111 16 N -0.156 5.156 17 C 0.044 3.956 18 N -0.118 5.118 19 C 0.052 3.948 20 C -0.156 4.156 21 C -0.070 4.070 22 C -0.130 4.130 23 C -0.048 4.048 24 C -0.186 4.186 25 C 0.359 3.641 26 O -0.390 6.390 27 N -0.240 5.240 28 C -0.062 4.062 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.006 0.994 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.162 0.838 40 H 0.181 0.819 41 H 0.199 0.801 42 H 0.183 0.817 43 H 0.102 0.898 44 H 0.124 0.876 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.134 2.027 15.330 17.472 hybrid contribution 0.025 0.231 -1.436 1.455 sum 8.160 2.257 13.894 16.270 Atomic orbital electron populations 1.22227 0.97285 1.02523 1.01398 1.21885 0.93808 0.89947 1.00665 1.62316 1.59096 1.02581 1.01764 1.19485 0.94062 0.93285 0.84947 1.21274 1.22384 1.18535 0.93093 0.92827 1.25607 0.96511 0.95322 1.00908 1.70027 1.37080 1.26669 1.22889 0.85684 0.79443 0.78323 0.78626 1.20214 1.21054 1.19518 1.20707 0.98427 0.97626 0.83533 1.24801 0.81831 0.98833 0.99392 1.74160 1.23292 1.12389 1.01227 1.74571 0.98465 1.22958 1.19569 1.21480 0.92311 0.94909 0.86919 1.43605 1.14716 1.32810 1.20669 1.18037 0.86566 0.93195 0.97008 1.21411 1.02940 0.96793 0.94477 1.21763 0.91311 0.94722 0.99222 1.21747 0.98714 0.99210 0.93293 1.21362 0.96419 0.90897 0.96124 1.19646 0.96308 1.05302 0.97375 1.18254 0.81645 0.78865 0.85359 1.90824 1.28828 1.66520 1.52843 1.44531 1.11071 1.42440 1.25909 1.22228 1.05661 0.94491 0.83788 0.91419 0.91976 0.93401 0.91801 0.92738 0.99431 0.96176 0.92770 0.89858 0.87667 0.83847 0.81852 0.80141 0.81656 0.89805 0.87643 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.00 9.26 71.98 0.67 -5.34 16 2 C 0.07 2.47 5.73 86.30 0.49 2.96 16 3 N -0.53 -20.65 4.39 -905.39 -3.97 -24.62 16 4 C 0.21 9.56 4.61 85.56 0.39 9.95 16 5 C -0.51 -26.46 8.55 25.60 0.22 -26.24 16 6 H 0.05 2.80 7.43 -2.91 -0.02 2.78 16 7 C 0.02 0.80 5.46 84.66 0.46 1.27 16 8 N -0.93 -50.93 13.29 21.45 0.28 -50.64 16 9 Si 0.95 41.70 29.54 68.60 2.03 43.72 16 10 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 C 0.13 4.19 4.18 85.56 0.36 4.55 16 14 C 0.22 7.33 6.60 137.67 0.91 8.24 16 15 N -0.27 -9.65 11.87 -49.59 -0.59 -10.24 16 16 N -0.31 -10.50 11.99 -58.09 -0.70 -11.20 16 17 C 0.40 12.55 8.29 260.18 2.16 14.70 16 18 N -0.43 -13.76 3.01 -338.29 -1.02 -14.77 16 19 C 0.15 4.26 6.65 38.66 0.26 4.51 16 20 C -0.14 -3.67 9.45 22.33 0.21 -3.45 16 21 C -0.05 -1.02 10.02 22.32 0.22 -0.80 16 22 C -0.11 -1.71 10.03 22.28 0.22 -1.49 16 23 C -0.03 -0.55 9.65 22.46 0.22 -0.33 16 24 C -0.18 -4.68 5.88 -20.06 -0.12 -4.80 16 25 C 0.57 15.55 7.65 86.64 0.66 16.21 16 26 O -0.52 -14.74 16.10 -4.13 -0.07 -14.80 16 27 N -0.51 -13.79 3.06 -668.44 -2.04 -15.83 16 28 C 0.08 1.53 10.35 127.77 1.32 2.85 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 2.00 6.31 -2.38 -0.02 1.98 16 31 H 0.05 1.81 6.27 -2.39 -0.01 1.79 16 32 H 0.06 2.64 7.10 -2.38 -0.02 2.63 16 33 H 0.05 2.05 7.07 -2.39 -0.02 2.04 16 34 H -0.01 -0.59 5.97 -2.39 -0.01 -0.61 16 35 H 0.02 0.96 7.82 -2.39 -0.02 0.95 16 36 H 0.26 13.84 8.31 -92.70 -0.77 13.07 16 37 H 0.08 2.66 5.99 -2.39 -0.01 2.64 16 38 H 0.11 3.19 5.64 -2.39 -0.01 3.18 16 39 H 0.14 4.35 4.39 -2.91 -0.01 4.33 16 40 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 41 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 42 H 0.17 2.51 7.76 -2.91 -0.02 2.49 16 43 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.11 1.80 7.41 -2.38 -0.02 1.78 16 45 H 0.10 1.80 7.88 -2.39 -0.02 1.78 16 Total: -1.00 -64.57 364.65 3.63 -60.94 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.05 Total: 14.66 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: 8.66 Total: 22.79 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -8.03 Total: -127.30 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.07 Total: -14.80 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -64.57 3.63 -60.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266900160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.083 kcal (2) G-P(sol) polarization free energy of solvation -64.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds