Wall clock time and date at job start Wed Apr 1 2020 00:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46501 * 109.47057 * 2 1 4 4 N 1.40081 * 126.03401 * 270.02048 * 3 2 1 5 5 C 1.30841 * 108.20078 * 179.97438 * 4 3 2 6 6 C 1.39865 * 108.20315 * 359.78334 * 5 4 3 7 7 C 1.34947 * 126.03553 * 90.00019 * 3 2 1 8 8 C 1.50695 * 126.12910 * 359.97438 * 7 3 2 9 9 C 1.53036 * 109.45973 * 144.99903 * 8 7 3 10 10 C 1.53190 * 109.31273 * 181.38575 * 9 8 7 11 11 N 1.46923 * 108.77809 * 305.36826 * 10 9 8 12 12 S 1.65608 * 120.62912 * 233.58654 * 11 10 9 13 13 O 1.42105 * 104.27567 * 206.06737 * 12 11 10 14 14 O 1.42099 * 104.27801 * 333.92707 * 12 11 10 15 15 C 1.81397 * 104.44917 * 89.99778 * 12 11 10 16 16 C 1.53002 * 109.47293 * 179.97438 * 15 12 11 17 17 C 1.50702 * 109.47210 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00272 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99776 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99723 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99713 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47194 * 90.00551 * 21 19 17 23 23 H 1.48504 * 109.46916 * 209.99963 * 21 19 17 24 24 H 1.48499 * 109.47410 * 329.99959 * 21 19 17 25 25 C 1.46927 * 118.73985 * 53.85904 * 11 10 9 26 26 C 1.53041 * 109.46180 * 265.06811 * 8 7 3 27 27 H 1.09001 * 109.47045 * 299.99999 * 1 2 3 28 28 H 1.09002 * 109.46962 * 60.00064 * 1 2 3 29 29 H 1.09003 * 109.46505 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47045 * 240.00000 * 2 1 3 31 31 H 1.09002 * 109.46962 * 119.99936 * 2 1 3 32 32 H 1.08007 * 125.89637 * 180.02562 * 5 4 3 33 33 H 1.08006 * 126.03871 * 180.23715 * 6 5 4 34 34 H 1.09009 * 109.45967 * 25.02798 * 8 7 3 35 35 H 1.09001 * 109.49825 * 61.43457 * 9 8 7 36 36 H 1.09001 * 109.52568 * 301.35215 * 9 8 7 37 37 H 1.09007 * 109.58645 * 185.57808 * 10 9 8 38 38 H 1.08998 * 109.70504 * 65.22672 * 10 9 8 39 39 H 1.09001 * 109.47492 * 299.99928 * 15 12 11 40 40 H 1.09001 * 109.47146 * 59.99771 * 15 12 11 41 41 H 1.09001 * 109.47069 * 300.00526 * 16 15 12 42 42 H 1.09001 * 109.46935 * 59.99981 * 16 15 12 43 43 H 0.97001 * 119.99602 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58645 * 65.92691 * 25 11 10 45 45 H 1.09001 * 109.58579 * 186.35848 * 25 11 10 46 46 H 1.08990 * 109.49710 * 298.56774 * 26 8 7 47 47 H 1.09009 * 109.49418 * 58.63037 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2927 2.1583 -1.1328 5 6 2.7075 3.3327 -0.7321 6 6 2.7059 3.3429 0.6665 7 6 2.2830 2.1297 1.0913 8 6 2.1287 1.6947 2.5258 9 6 3.2320 2.3321 3.3733 10 6 3.0927 1.8605 4.8242 11 7 1.7299 2.1538 5.2881 12 16 1.4796 3.0191 6.6778 13 8 0.2020 2.5926 7.1308 14 8 2.6476 2.7838 7.4522 15 6 1.4166 4.7472 6.1299 16 6 1.1860 5.6572 7.3380 17 6 1.1342 7.0929 6.8829 18 1 1.2534 7.3324 5.8366 19 6 0.9337 8.1007 7.8023 20 7 0.7881 7.8091 9.0763 21 14 0.8688 9.8802 7.2380 22 1 -0.5322 10.2434 6.9056 23 1 1.3642 10.7625 8.3250 24 1 1.7228 10.0496 6.0350 25 6 0.5933 1.6598 4.4989 26 6 0.7606 2.1386 3.0488 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.9970 4.1540 -1.3711 33 1 2.9935 4.1719 1.2963 34 1 2.2056 0.6091 2.5864 35 1 3.1404 3.4175 3.3333 36 1 4.2066 2.0348 2.9861 37 1 3.8132 2.3869 5.4503 38 1 3.2749 0.7873 4.8808 39 1 2.3593 5.0110 5.6505 40 1 0.5998 4.8734 5.4192 41 1 0.2432 5.3932 7.8171 42 1 2.0025 5.5310 8.0490 43 1 0.6473 8.5181 9.7231 44 1 0.5749 0.5703 4.5271 45 1 -0.3360 2.0538 4.9104 46 1 0.6922 3.2257 3.0118 47 1 -0.0241 1.7033 2.4299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278855161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:20 Heat of formation + Delta-G solvation = -10.804961 kcal Electronic energy + Delta-G solvation = -28458.063828 eV Core-core repulsion = 24576.126897 eV Total energy + Delta-G solvation = -3881.936931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.56972 -38.57617 -36.69730 -35.47766 -34.81895 -33.90489 -33.52808 -31.26882 -31.16371 -29.88024 -29.13973 -25.63048 -24.85874 -24.03771 -23.55208 -21.94092 -21.36913 -20.47817 -19.47058 -18.51549 -17.68614 -17.12797 -16.50089 -15.98660 -15.50063 -15.38880 -15.32708 -14.61902 -14.59090 -14.50173 -14.41466 -13.92600 -13.77176 -13.64193 -13.39026 -13.26554 -12.84168 -12.62663 -12.53496 -12.35434 -11.95790 -11.76904 -11.73322 -11.62382 -11.58109 -11.34680 -11.30365 -11.08698 -10.97414 -10.93845 -10.83291 -10.61726 -10.41249 -10.38459 -9.77273 -9.43603 -9.34478 -8.82601 -8.65736 -8.50987 -6.13112 -4.18627 0.72527 1.69001 2.27747 2.70684 2.97122 3.25817 3.32253 3.34874 4.12752 4.20871 4.29362 4.38822 4.39243 4.46404 4.58643 4.67993 4.73449 4.79825 4.87140 4.95121 5.04465 5.15512 5.18965 5.22203 5.28343 5.35477 5.39173 5.50299 5.55904 5.60497 5.62940 5.65689 5.69956 5.73960 5.78948 5.88908 5.94111 6.10839 6.18941 6.48442 6.51728 6.61974 6.84084 7.29057 7.34910 7.56254 7.80014 8.16865 8.84874 9.46261 10.97924 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012583 B = 0.003116 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.636534 B = 8984.592241 C =10362.872322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.127 3.873 3 N -0.370 5.370 4 N -0.303 5.303 5 C 0.046 3.954 6 C -0.269 4.269 7 C 0.095 3.905 8 C -0.020 4.020 9 C -0.125 4.125 10 C 0.123 3.877 11 N -1.007 6.007 12 S 2.589 3.411 13 O -0.964 6.964 14 O -0.964 6.964 15 C -0.588 4.588 16 C 0.028 3.972 17 C -0.520 4.520 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.124 3.876 26 C -0.127 4.127 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.181 0.819 33 H 0.148 0.852 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.265 0.735 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.676 -16.248 -17.905 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.153 5.153 4 N -0.124 5.124 5 C -0.140 4.140 6 C -0.298 4.298 7 C -0.033 4.033 8 C -0.041 4.041 9 C -0.165 4.165 10 C -0.003 4.003 11 N -0.843 5.843 12 S 2.688 3.312 13 O -0.955 6.955 14 O -0.954 6.954 15 C -0.721 4.721 16 C -0.011 4.011 17 C -0.559 4.559 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.002 4.002 26 C -0.167 4.167 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.198 0.802 33 H 0.165 0.835 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.098 0.902 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.261 -17.502 -17.886 25.126 hybrid contribution 0.151 2.022 -0.236 2.041 sum 2.412 -15.480 -18.122 23.955 Atomic orbital electron populations 1.22239 0.94201 1.03128 1.03441 1.21638 0.95346 0.78275 1.04171 1.48675 1.51356 1.11897 1.03332 1.77342 1.22448 1.04554 1.08028 1.23829 0.99233 0.95687 0.95212 1.21285 1.14998 0.98584 0.94918 1.21071 0.99743 0.92406 0.90043 1.19757 0.96828 1.00477 0.87006 1.21991 0.97932 1.02008 0.94534 1.21363 0.82822 1.01463 0.94610 1.58020 1.11418 1.70225 1.44636 1.05766 0.74033 0.77923 0.73457 1.93534 1.42440 1.80837 1.78674 1.93534 1.49916 1.85031 1.66943 1.30489 1.10037 1.19912 1.11705 1.18961 0.98445 0.94376 0.89305 1.21000 1.50725 0.90035 0.94145 0.92031 1.25067 0.94945 0.99589 0.94879 1.69953 1.48444 1.33236 1.01235 0.86478 0.78398 0.84055 0.78414 1.20472 1.21014 1.19720 1.21437 0.89031 0.99539 0.90147 1.22124 0.95499 1.02916 0.96163 0.91633 0.91660 0.90497 0.88922 0.89051 0.80218 0.83464 0.90077 0.90195 0.90346 0.88561 0.91307 0.86247 0.86305 0.94934 0.94902 0.92531 0.91269 0.88605 0.90221 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.24 37.16 0.38 -0.64 16 2 C 0.13 0.84 6.96 -4.04 -0.03 0.82 16 3 N -0.37 -3.67 3.61 -57.14 -0.21 -3.87 16 4 N -0.30 -3.57 12.58 30.63 0.39 -3.19 16 5 C 0.05 0.48 12.03 -17.36 -0.21 0.27 16 6 C -0.27 -2.77 9.98 -40.01 -0.40 -3.17 16 7 C 0.09 0.92 5.85 -82.27 -0.48 0.44 16 8 C -0.02 -0.17 2.34 -91.73 -0.21 -0.38 16 9 C -0.13 -1.07 4.92 -26.61 -0.13 -1.20 16 10 C 0.12 1.25 6.31 -3.71 -0.02 1.23 16 11 N -1.01 -12.41 3.21 -113.27 -0.36 -12.78 16 12 S 2.59 44.79 5.41 -107.50 -0.58 44.20 16 13 O -0.96 -19.30 16.72 -57.54 -0.96 -20.26 16 14 O -0.96 -19.27 16.72 -57.54 -0.96 -20.23 16 15 C -0.59 -10.87 6.12 37.16 0.23 -10.64 16 16 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 17 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 21 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.12 1.26 6.34 -3.48 -0.02 1.24 16 26 C -0.13 -1.11 5.36 -26.38 -0.14 -1.25 16 27 H 0.06 0.41 6.54 -51.93 -0.34 0.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.44 6.98 -51.93 -0.36 0.08 16 32 H 0.18 1.38 8.06 -52.48 -0.42 0.95 16 33 H 0.15 1.39 7.41 -52.48 -0.39 1.00 16 34 H 0.08 0.56 6.95 -51.92 -0.36 0.20 16 35 H 0.08 0.72 7.36 -51.93 -0.38 0.34 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 1.05 7.10 -51.93 -0.37 0.68 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 40 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 41 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.10 1.05 7.09 -51.93 -0.37 0.68 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 0.55 6.54 -51.92 -0.34 0.21 16 LS Contribution 388.03 15.07 5.85 5.85 Total: -1.00 -35.99 388.03 -10.25 -46.23 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.52 Total: -0.71 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -1.59 Total: -25.69 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.55 Total: -45.42 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.92 Total: -40.49 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 44.79 SS G_CDS: -0.58 Total: 44.20 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.99 -10.25 -46.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278855161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.429 kcal (2) G-P(sol) polarization free energy of solvation -35.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds