Wall clock time and date at job start Wed Apr 1 2020 00:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46501 * 109.47057 * 2 1 4 4 N 1.40081 * 126.03401 * 270.02048 * 3 2 1 5 5 C 1.30841 * 108.20078 * 179.97438 * 4 3 2 6 6 C 1.39865 * 108.20315 * 359.78334 * 5 4 3 7 7 C 1.34947 * 126.03553 * 90.00019 * 3 2 1 8 8 C 1.50695 * 126.12910 * 359.97438 * 7 3 2 9 9 C 1.53036 * 109.45973 * 144.99903 * 8 7 3 10 10 C 1.53190 * 109.31273 * 181.38575 * 9 8 7 11 11 N 1.46923 * 108.77809 * 305.36826 * 10 9 8 12 12 S 1.65608 * 120.62912 * 233.58654 * 11 10 9 13 13 O 1.42105 * 104.27567 * 206.06737 * 12 11 10 14 14 O 1.42099 * 104.27801 * 333.92707 * 12 11 10 15 15 C 1.81397 * 104.44917 * 89.99778 * 12 11 10 16 16 C 1.53002 * 109.47293 * 179.97438 * 15 12 11 17 17 C 1.50702 * 109.47210 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00272 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99776 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99723 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99713 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47194 * 90.00551 * 21 19 17 23 23 H 1.48504 * 109.46916 * 209.99963 * 21 19 17 24 24 H 1.48499 * 109.47410 * 329.99959 * 21 19 17 25 25 C 1.46927 * 118.73985 * 53.85904 * 11 10 9 26 26 C 1.53041 * 109.46180 * 265.06811 * 8 7 3 27 27 H 1.09001 * 109.47045 * 299.99999 * 1 2 3 28 28 H 1.09002 * 109.46962 * 60.00064 * 1 2 3 29 29 H 1.09003 * 109.46505 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47045 * 240.00000 * 2 1 3 31 31 H 1.09002 * 109.46962 * 119.99936 * 2 1 3 32 32 H 1.08007 * 125.89637 * 180.02562 * 5 4 3 33 33 H 1.08006 * 126.03871 * 180.23715 * 6 5 4 34 34 H 1.09009 * 109.45967 * 25.02798 * 8 7 3 35 35 H 1.09001 * 109.49825 * 61.43457 * 9 8 7 36 36 H 1.09001 * 109.52568 * 301.35215 * 9 8 7 37 37 H 1.09007 * 109.58645 * 185.57808 * 10 9 8 38 38 H 1.08998 * 109.70504 * 65.22672 * 10 9 8 39 39 H 1.09001 * 109.47492 * 299.99928 * 15 12 11 40 40 H 1.09001 * 109.47146 * 59.99771 * 15 12 11 41 41 H 1.09001 * 109.47069 * 300.00526 * 16 15 12 42 42 H 1.09001 * 109.46935 * 59.99981 * 16 15 12 43 43 H 0.97001 * 119.99602 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.58645 * 65.92691 * 25 11 10 45 45 H 1.09001 * 109.58579 * 186.35848 * 25 11 10 46 46 H 1.08990 * 109.49710 * 298.56774 * 26 8 7 47 47 H 1.09009 * 109.49418 * 58.63037 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2927 2.1583 -1.1328 5 6 2.7075 3.3327 -0.7321 6 6 2.7059 3.3429 0.6665 7 6 2.2830 2.1297 1.0913 8 6 2.1287 1.6947 2.5258 9 6 3.2320 2.3321 3.3733 10 6 3.0927 1.8605 4.8242 11 7 1.7299 2.1538 5.2881 12 16 1.4796 3.0191 6.6778 13 8 0.2020 2.5926 7.1308 14 8 2.6476 2.7838 7.4522 15 6 1.4166 4.7472 6.1299 16 6 1.1860 5.6572 7.3380 17 6 1.1342 7.0929 6.8829 18 1 1.2534 7.3324 5.8366 19 6 0.9337 8.1007 7.8023 20 7 0.7881 7.8091 9.0763 21 14 0.8688 9.8802 7.2380 22 1 -0.5322 10.2434 6.9056 23 1 1.3642 10.7625 8.3250 24 1 1.7228 10.0496 6.0350 25 6 0.5933 1.6598 4.4989 26 6 0.7606 2.1386 3.0488 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.9970 4.1540 -1.3711 33 1 2.9935 4.1719 1.2963 34 1 2.2056 0.6091 2.5864 35 1 3.1404 3.4175 3.3333 36 1 4.2066 2.0348 2.9861 37 1 3.8132 2.3869 5.4503 38 1 3.2749 0.7873 4.8808 39 1 2.3593 5.0110 5.6505 40 1 0.5998 4.8734 5.4192 41 1 0.2432 5.3932 7.8171 42 1 2.0025 5.5310 8.0490 43 1 0.6473 8.5181 9.7231 44 1 0.5749 0.5703 4.5271 45 1 -0.3360 2.0538 4.9104 46 1 0.6922 3.2257 3.0118 47 1 -0.0241 1.7033 2.4299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278855161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:19 Heat of formation + Delta-G solvation = -35.265300 kcal Electronic energy + Delta-G solvation = -28459.124508 eV Core-core repulsion = 24576.126897 eV Total energy + Delta-G solvation = -3882.997611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.27736 -39.38504 -38.20216 -36.98940 -35.87907 -35.40373 -34.35682 -33.10161 -32.03101 -30.53702 -29.87339 -27.58088 -25.69012 -24.61219 -24.29628 -23.59365 -22.31536 -21.28857 -20.27671 -19.67376 -19.05128 -18.33821 -17.79046 -17.23159 -17.02575 -16.52671 -16.07813 -15.92706 -15.69432 -15.32018 -15.15971 -15.04589 -14.60352 -14.55063 -14.47894 -14.38893 -13.96898 -13.71433 -13.58070 -13.33289 -13.16550 -13.07922 -12.92551 -12.90716 -12.79894 -12.77734 -12.28898 -12.23309 -12.19697 -12.06970 -12.04764 -11.74949 -11.66785 -11.55669 -11.37855 -11.07411 -10.63974 -10.15089 -9.90423 -9.39115 -8.25302 -6.39041 -0.67666 0.97043 1.41347 1.42819 1.54001 1.66459 1.77347 1.95614 2.38591 2.88271 3.08144 3.20166 3.44825 3.66457 3.70164 3.87326 3.96231 4.09810 4.12500 4.15745 4.20803 4.23570 4.33226 4.41846 4.45653 4.61747 4.65408 4.72800 4.77112 4.79451 4.85561 4.87604 4.95019 4.99423 5.03345 5.15228 5.18845 5.25932 5.29172 5.29942 5.34488 5.51031 5.69538 5.71979 5.80314 6.07743 6.20389 6.74749 6.83049 7.31137 8.86914 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012583 B = 0.003116 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.636534 B = 8984.592241 C =10362.872322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.117 3.883 3 N -0.371 5.371 4 N -0.336 5.336 5 C 0.036 3.964 6 C -0.287 4.287 7 C 0.097 3.903 8 C -0.014 4.014 9 C -0.121 4.121 10 C 0.116 3.884 11 N -0.995 5.995 12 S 2.614 3.386 13 O -0.994 6.994 14 O -0.993 6.993 15 C -0.589 4.589 16 C 0.021 3.979 17 C -0.537 4.537 18 H 0.075 0.925 19 C -0.004 4.004 20 N -0.934 5.934 21 Si 0.972 3.028 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.257 1.257 25 C 0.118 3.882 26 C -0.122 4.122 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.116 0.884 32 H 0.198 0.802 33 H 0.151 0.849 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.005 0.995 42 H 0.005 0.995 43 H 0.267 0.733 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.986 -17.220 -19.955 26.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.003 4.003 3 N -0.154 5.154 4 N -0.158 5.158 5 C -0.148 4.148 6 C -0.316 4.316 7 C -0.031 4.031 8 C -0.035 4.035 9 C -0.160 4.160 10 C -0.008 4.008 11 N -0.834 5.834 12 S 2.712 3.288 13 O -0.984 6.984 14 O -0.983 6.983 15 C -0.720 4.720 16 C -0.017 4.017 17 C -0.576 4.576 18 H 0.093 0.907 19 C -0.202 4.202 20 N -0.574 5.574 21 Si 0.795 3.205 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.181 1.181 25 C -0.007 4.007 26 C -0.162 4.162 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.134 0.866 32 H 0.215 0.785 33 H 0.169 0.831 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.023 0.977 42 H 0.024 0.976 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.568 -18.470 -19.955 27.311 hybrid contribution 0.060 2.208 0.352 2.236 sum 2.627 -16.262 -19.603 25.605 Atomic orbital electron populations 1.22203 0.93682 1.04260 1.02311 1.21966 0.95775 0.76980 1.05554 1.48953 1.50892 1.12724 1.02847 1.77288 1.23669 1.05381 1.09439 1.24210 0.98871 0.95942 0.95800 1.21489 1.15817 0.99274 0.95034 1.21259 0.99047 0.92217 0.90591 1.19764 0.96147 1.01755 0.85788 1.21959 0.98965 1.01724 0.93387 1.21636 0.80979 1.02945 0.95269 1.57624 1.13351 1.68809 1.43614 1.04709 0.72722 0.77265 0.74152 1.93489 1.43888 1.81020 1.80033 1.93490 1.50880 1.85203 1.68775 1.30408 1.11875 1.20421 1.09322 1.18805 0.95992 0.95548 0.91404 1.21518 1.50000 0.91244 0.94867 0.90689 1.26100 0.94486 1.04720 0.94883 1.70099 1.49805 1.34823 1.02678 0.85344 0.78858 0.77949 0.78317 1.19654 1.20861 1.18111 1.21709 0.87615 1.01043 0.90327 1.22076 0.96460 1.02360 0.95287 0.91827 0.93622 0.88249 0.88641 0.86610 0.78532 0.83088 0.87794 0.90830 0.88791 0.89470 0.88861 0.84219 0.84406 0.97714 0.97630 0.92417 0.88592 0.89593 0.91346 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.24 71.99 0.74 -0.82 16 2 C 0.12 1.24 6.96 86.38 0.60 1.84 16 3 N -0.37 -6.58 3.61 -334.68 -1.21 -7.79 16 4 N -0.34 -7.56 12.58 -57.02 -0.72 -8.28 16 5 C 0.04 0.72 12.03 85.23 1.02 1.75 16 6 C -0.29 -5.47 9.98 21.99 0.22 -5.25 16 7 C 0.10 1.65 5.85 41.40 0.24 1.89 16 8 C -0.01 -0.19 2.34 -11.52 -0.03 -0.21 16 9 C -0.12 -1.70 4.92 30.67 0.15 -1.55 16 10 C 0.12 2.04 6.31 86.36 0.55 2.59 16 11 N -0.99 -22.50 3.21 -512.29 -1.65 -24.15 16 12 S 2.61 90.00 5.41 -56.49 -0.31 89.70 16 13 O -0.99 -40.04 16.72 -127.65 -2.13 -42.17 16 14 O -0.99 -39.96 16.72 -127.65 -2.13 -42.10 16 15 C -0.59 -21.75 6.12 71.98 0.44 -21.31 16 16 C 0.02 1.11 4.98 29.85 0.15 1.26 16 17 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 18 H 0.07 3.82 7.74 -2.91 -0.02 3.79 16 19 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 20 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 21 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 C 0.12 2.06 6.34 86.51 0.55 2.61 16 26 C -0.12 -1.76 5.36 30.82 0.17 -1.60 16 27 H 0.06 0.62 6.54 -2.39 -0.02 0.60 16 28 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.12 0.64 6.98 -2.39 -0.02 0.63 16 32 H 0.20 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.15 2.64 7.41 -2.91 -0.02 2.62 16 34 H 0.10 0.92 6.95 -2.38 -0.02 0.90 16 35 H 0.07 1.15 7.36 -2.39 -0.02 1.14 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.74 7.10 -2.38 -0.02 1.72 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.14 4.51 8.14 -2.39 -0.02 4.49 16 40 H 0.14 4.49 8.14 -2.39 -0.02 4.47 16 41 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.09 1.73 7.09 -2.39 -0.02 1.71 16 46 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.09 1.04 6.54 -2.38 -0.02 1.03 16 Total: -1.00 -79.78 388.03 0.61 -79.18 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.95 Total: 14.87 kcal Atomic # 6 Polarization: -53.44 SS G_CDS: 5.49 Total: -47.95 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -3.29 Total: -96.73 kcal Atomic # 8 Polarization: -80.00 SS G_CDS: -4.27 Total: -84.27 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 90.00 SS G_CDS: -0.31 Total: 89.70 kcal Total: -79.78 0.61 -79.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278855161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.910 kcal (2) G-P(sol) polarization free energy of solvation -79.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds