Wall clock time and date at job start Wed Apr 1 2020 00:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.34942 * 126.03458 * 124.99756 * 3 2 1 5 5 C 1.35315 * 107.74657 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.04097 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.40256 * 20.00507 * 6 5 4 8 8 C 1.53181 * 109.39987 * 260.17688 * 6 5 4 9 9 S 1.81816 * 108.67963 * 177.23616 * 8 6 5 10 10 O 1.42098 * 108.70693 * 166.57284 * 9 8 6 11 11 O 1.42107 * 108.70032 * 298.05918 * 9 8 6 12 12 C 1.81814 * 101.02402 * 52.31267 * 9 8 6 13 13 C 1.53181 * 108.67735 * 307.69158 * 12 9 8 14 14 N 1.46471 * 109.39915 * 139.82671 * 6 5 4 15 15 C 1.46901 * 111.00043 * 317.12822 * 14 6 5 16 16 C 1.52996 * 109.47124 * 169.99763 * 15 14 6 17 17 C 1.53006 * 109.47121 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47065 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99887 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00045 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99987 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.46931 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46815 * 120.00437 * 22 20 18 25 25 H 1.48500 * 109.47004 * 240.00159 * 22 20 18 26 26 C 1.39869 * 107.91755 * 0.02562 * 5 4 3 27 27 N 1.30835 * 108.20182 * 359.74046 * 26 5 4 28 28 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 30 30 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 32 32 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 33 33 H 1.08004 * 126.12839 * 359.95877 * 4 3 2 34 34 H 1.09010 * 109.60435 * 296.99095 * 8 6 5 35 35 H 1.08997 * 109.60648 * 57.47697 * 8 6 5 36 36 H 1.09000 * 109.60298 * 67.44023 * 12 9 8 37 37 H 1.08996 * 109.60659 * 187.92778 * 12 9 8 38 38 H 1.09004 * 109.40162 * 182.76837 * 13 12 9 39 39 H 1.09005 * 109.39721 * 302.49513 * 13 12 9 40 40 H 1.08995 * 109.47403 * 290.00063 * 15 14 6 41 41 H 1.09007 * 109.46868 * 50.00055 * 15 14 6 42 42 H 1.08993 * 109.47512 * 299.99962 * 16 15 14 43 43 H 1.09007 * 109.47009 * 60.00379 * 16 15 14 44 44 H 1.08995 * 109.47472 * 300.00340 * 17 16 15 45 45 H 1.09007 * 109.46803 * 60.00334 * 17 16 15 46 46 H 0.96999 * 120.00414 * 179.97438 * 21 20 18 47 47 H 1.08003 * 125.89723 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9210 0.8939 5 6 3.0722 3.2134 0.5457 6 6 3.9560 4.1994 1.2652 7 1 4.6764 3.6590 1.8792 8 6 3.0950 5.0955 2.1607 9 16 4.1870 6.2213 3.0803 10 8 3.3963 7.2475 3.6641 11 8 5.0479 5.4481 3.9053 12 6 5.1662 6.9386 1.7267 13 6 5.7533 5.7988 0.8885 14 7 4.6711 5.0182 0.2835 15 6 5.1737 4.1938 -0.8236 16 6 5.6904 5.1015 -1.9416 17 6 6.2145 4.2428 -3.0944 18 6 6.7240 5.1368 -4.1954 19 1 6.6790 6.2100 -4.0839 20 6 7.2486 4.5846 -5.3446 21 7 7.3039 3.2776 -5.4803 22 14 7.8809 5.6928 -6.7091 23 1 7.7075 7.1134 -6.3132 24 1 9.3212 5.4168 -6.9433 25 1 7.1173 5.4288 -7.9550 26 6 2.3127 3.4723 -0.5999 27 7 1.6847 2.3733 -0.9309 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.3182 1.4127 1.7365 34 1 2.4071 5.6752 1.5450 35 1 2.5316 4.4792 2.8613 36 1 4.5253 7.5598 1.1011 37 1 5.9741 7.5424 2.1398 38 1 6.3832 6.2148 0.1022 39 1 6.3544 5.1519 1.5276 40 1 5.9852 3.5603 -0.4656 41 1 4.3668 3.5689 -1.2066 42 1 4.8789 5.7349 -2.2996 43 1 6.4973 5.7263 -1.5586 44 1 7.0261 3.6096 -2.7362 45 1 5.4079 3.6176 -3.4776 46 1 7.6726 2.8890 -6.2889 47 1 2.2574 4.4155 -1.1232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279321318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:55 Heat of formation + Delta-G solvation = 14.727069 kcal Electronic energy + Delta-G solvation = -28426.592548 eV Core-core repulsion = 24545.762769 eV Total energy + Delta-G solvation = -3880.829780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.46636 -38.68476 -37.05614 -36.13792 -34.72412 -34.09675 -32.65209 -32.02122 -30.39488 -29.71616 -28.77324 -26.11533 -24.55148 -23.60166 -23.13336 -21.72975 -20.84596 -19.98934 -19.69251 -18.87118 -17.39876 -16.61172 -16.52028 -16.27503 -15.82702 -15.79382 -15.38766 -15.01275 -14.68429 -14.43834 -14.30744 -14.16885 -13.92307 -13.27903 -13.11628 -12.85606 -12.74910 -12.42184 -12.36161 -12.33077 -12.22394 -12.14413 -12.04062 -11.89026 -11.70774 -11.61569 -11.29003 -10.96553 -10.86372 -10.62166 -10.57357 -10.48480 -10.21792 -9.65173 -9.37853 -9.36962 -9.06325 -8.42739 -8.35324 -8.33019 -6.00532 -4.02670 -0.08562 1.83433 2.41432 2.51631 2.76493 3.30475 3.38168 3.41916 3.51309 3.56271 4.01622 4.27836 4.42889 4.46014 4.56925 4.66971 4.70405 4.73413 4.83897 4.92056 4.99402 5.03547 5.17369 5.22949 5.35230 5.35725 5.46563 5.61923 5.62584 5.66450 5.72254 5.84372 5.86074 5.93223 5.98531 6.29837 6.58816 6.64596 6.66409 6.91710 7.02130 7.15877 7.20318 7.67548 7.70606 7.81431 7.99723 8.42300 9.04890 9.61646 11.10868 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007831 B = 0.003835 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3574.616621 B = 7298.741187 C =10359.124223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.374 5.374 4 C 0.060 3.940 5 C -0.229 4.229 6 C 0.178 3.822 7 H 0.065 0.935 8 C -0.583 4.583 9 S 2.406 3.594 10 O -0.948 6.948 11 O -0.944 6.944 12 C -0.590 4.590 13 C 0.059 3.941 14 N -0.547 5.547 15 C 0.057 3.943 16 C -0.107 4.107 17 C 0.023 3.977 18 C -0.518 4.518 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.890 3.110 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.078 3.922 27 N -0.292 5.292 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.172 0.828 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.112 0.888 39 H 0.055 0.945 40 H 0.032 0.968 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.013 0.987 45 H 0.015 0.985 46 H 0.259 0.741 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.942 -2.793 17.426 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.010 3.990 3 N -0.156 5.156 4 C -0.087 4.087 5 C -0.242 4.242 6 C 0.068 3.932 7 H 0.083 0.917 8 C -0.713 4.713 9 S 2.590 3.410 10 O -0.945 6.945 11 O -0.941 6.941 12 C -0.721 4.721 13 C -0.070 4.070 14 N -0.272 5.272 15 C -0.069 4.069 16 C -0.145 4.145 17 C -0.015 4.015 18 C -0.556 4.556 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.109 4.109 27 N -0.112 5.112 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.189 0.811 34 H 0.161 0.839 35 H 0.151 0.849 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.130 0.870 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.040 -3.153 17.242 21.265 hybrid contribution 1.464 0.210 -0.754 1.660 sum -10.576 -2.943 16.488 19.808 Atomic orbital electron populations 1.22045 0.93869 1.02724 1.03572 1.21666 0.95970 0.77584 1.03806 1.48631 1.35808 1.10295 1.20874 1.22248 0.95688 0.94323 0.96451 1.19549 1.08401 0.94210 1.02017 1.19346 0.92580 0.90095 0.91184 0.91727 1.30306 1.14346 1.14516 1.12164 1.08266 0.77659 0.77139 0.77909 1.93584 1.69530 1.56463 1.74970 1.93583 1.65700 1.70844 1.63960 1.30176 1.14909 1.09773 1.17216 1.21865 0.93159 0.92972 0.99014 1.61385 1.27631 1.27727 1.10499 1.22438 0.99063 0.95307 0.90120 1.21730 0.99406 0.98265 0.95094 1.19052 0.95926 0.94886 0.91606 1.21270 1.39939 0.93093 1.01307 0.92625 1.25019 0.96041 0.94919 0.98466 1.69974 1.46172 1.09882 1.27492 0.86565 0.78495 0.80971 0.82144 1.19718 1.21086 1.21038 1.23803 0.94171 0.97567 0.95315 1.77414 1.24030 0.96854 1.12925 0.92239 0.90965 0.90834 0.89621 0.88833 0.81123 0.83870 0.84895 0.83854 0.84698 0.87010 0.92679 0.94936 0.89421 0.92383 0.93345 0.96903 0.96621 0.93117 0.79533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 10.10 37.16 0.38 -0.80 16 2 C 0.13 1.02 7.23 -4.04 -0.03 1.00 16 3 N -0.37 -4.25 3.68 -61.36 -0.23 -4.48 16 4 C 0.06 0.62 11.36 -17.23 -0.20 0.43 16 5 C -0.23 -2.67 3.73 -105.05 -0.39 -3.06 16 6 C 0.18 1.91 2.31 -69.00 -0.16 1.75 16 7 H 0.06 0.66 7.92 -51.93 -0.41 0.25 16 8 C -0.58 -5.07 5.83 37.25 0.22 -4.85 16 9 S 2.41 23.85 5.35 -107.50 -0.57 23.28 16 10 O -0.95 -12.36 18.11 -57.80 -1.05 -13.41 16 11 O -0.94 -12.16 18.10 -57.80 -1.05 -13.21 16 12 C -0.59 -5.17 6.57 37.25 0.24 -4.93 16 13 C 0.06 0.65 5.28 -3.94 -0.02 0.63 16 14 N -0.55 -6.67 4.19 -228.48 -0.96 -7.63 16 15 C 0.06 0.89 4.46 -3.83 -0.02 0.87 16 16 C -0.11 -2.04 5.08 -26.73 -0.14 -2.18 16 17 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 18 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 22 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.08 1.04 9.58 -17.37 -0.17 0.88 16 27 N -0.29 -4.14 12.42 30.62 0.38 -3.76 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.47 8.07 -51.93 -0.42 0.05 16 33 H 0.17 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.14 1.11 8.14 -51.92 -0.42 0.69 16 35 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.14 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.11 1.33 5.79 -51.93 -0.30 1.03 16 39 H 0.06 0.59 7.93 -51.93 -0.41 0.17 16 40 H 0.03 0.52 8.13 -51.93 -0.42 0.10 16 41 H 0.09 1.45 4.76 -51.93 -0.25 1.20 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.89 6.20 -51.93 -0.32 0.56 16 44 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.19 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 387.59 15.07 5.84 5.84 Total: -1.00 -36.83 387.59 -10.31 -47.15 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.57 Total: -1.20 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -0.83 Total: -23.02 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.07 Total: -41.91 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -2.09 Total: -26.62 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 23.85 SS G_CDS: -0.57 Total: 23.28 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.83 -10.31 -47.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279321318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.873 kcal (2) G-P(sol) polarization free energy of solvation -36.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds