Wall clock time and date at job start Wed Apr 1 2020 00:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.34942 * 126.03458 * 124.99756 * 3 2 1 5 5 C 1.35315 * 107.74657 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.04097 * 180.02562 * 5 4 3 7 7 H 1.08996 * 109.40256 * 20.00507 * 6 5 4 8 8 C 1.53181 * 109.39987 * 260.17688 * 6 5 4 9 9 S 1.81816 * 108.67963 * 177.23616 * 8 6 5 10 10 O 1.42098 * 108.70693 * 166.57284 * 9 8 6 11 11 O 1.42107 * 108.70032 * 298.05918 * 9 8 6 12 12 C 1.81814 * 101.02402 * 52.31267 * 9 8 6 13 13 C 1.53181 * 108.67735 * 307.69158 * 12 9 8 14 14 N 1.46471 * 109.39915 * 139.82671 * 6 5 4 15 15 C 1.46901 * 111.00043 * 317.12822 * 14 6 5 16 16 C 1.52996 * 109.47124 * 169.99763 * 15 14 6 17 17 C 1.53006 * 109.47121 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47065 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99887 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00045 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99987 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.46931 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46815 * 120.00437 * 22 20 18 25 25 H 1.48500 * 109.47004 * 240.00159 * 22 20 18 26 26 C 1.39869 * 107.91755 * 0.02562 * 5 4 3 27 27 N 1.30835 * 108.20182 * 359.74046 * 26 5 4 28 28 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 30 30 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 32 32 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 33 33 H 1.08004 * 126.12839 * 359.95877 * 4 3 2 34 34 H 1.09010 * 109.60435 * 296.99095 * 8 6 5 35 35 H 1.08997 * 109.60648 * 57.47697 * 8 6 5 36 36 H 1.09000 * 109.60298 * 67.44023 * 12 9 8 37 37 H 1.08996 * 109.60659 * 187.92778 * 12 9 8 38 38 H 1.09004 * 109.40162 * 182.76837 * 13 12 9 39 39 H 1.09005 * 109.39721 * 302.49513 * 13 12 9 40 40 H 1.08995 * 109.47403 * 290.00063 * 15 14 6 41 41 H 1.09007 * 109.46868 * 50.00055 * 15 14 6 42 42 H 1.08993 * 109.47512 * 299.99962 * 16 15 14 43 43 H 1.09007 * 109.47009 * 60.00379 * 16 15 14 44 44 H 1.08995 * 109.47472 * 300.00340 * 17 16 15 45 45 H 1.09007 * 109.46803 * 60.00334 * 17 16 15 46 46 H 0.96999 * 120.00414 * 179.97438 * 21 20 18 47 47 H 1.08003 * 125.89723 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9210 0.8939 5 6 3.0722 3.2134 0.5457 6 6 3.9560 4.1994 1.2652 7 1 4.6764 3.6590 1.8792 8 6 3.0950 5.0955 2.1607 9 16 4.1870 6.2213 3.0803 10 8 3.3963 7.2475 3.6641 11 8 5.0479 5.4481 3.9053 12 6 5.1662 6.9386 1.7267 13 6 5.7533 5.7988 0.8885 14 7 4.6711 5.0182 0.2835 15 6 5.1737 4.1938 -0.8236 16 6 5.6904 5.1015 -1.9416 17 6 6.2145 4.2428 -3.0944 18 6 6.7240 5.1368 -4.1954 19 1 6.6790 6.2100 -4.0839 20 6 7.2486 4.5846 -5.3446 21 7 7.3039 3.2776 -5.4803 22 14 7.8809 5.6928 -6.7091 23 1 7.7075 7.1134 -6.3132 24 1 9.3212 5.4168 -6.9433 25 1 7.1173 5.4288 -7.9550 26 6 2.3127 3.4723 -0.5999 27 7 1.6847 2.3733 -0.9309 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.3182 1.4127 1.7365 34 1 2.4071 5.6752 1.5450 35 1 2.5316 4.4792 2.8613 36 1 4.5253 7.5598 1.1011 37 1 5.9741 7.5424 2.1398 38 1 6.3832 6.2148 0.1022 39 1 6.3544 5.1519 1.5276 40 1 5.9852 3.5603 -0.4656 41 1 4.3668 3.5689 -1.2066 42 1 4.8789 5.7349 -2.2996 43 1 6.4973 5.7263 -1.5586 44 1 7.0261 3.6096 -2.7362 45 1 5.4079 3.6176 -3.4776 46 1 7.6726 2.8890 -6.2889 47 1 2.2574 4.4155 -1.1232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279321318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:54 Heat of formation + Delta-G solvation = -12.473606 kcal Electronic energy + Delta-G solvation = -28427.772058 eV Core-core repulsion = 24545.762769 eV Total energy + Delta-G solvation = -3882.009289 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.34472 -39.66562 -37.96672 -37.03931 -35.98546 -35.34940 -33.98765 -33.25571 -31.29656 -30.99224 -29.56553 -27.81275 -25.32891 -24.69759 -24.37154 -22.91828 -21.67236 -21.50579 -20.59910 -19.68662 -18.53181 -18.12988 -17.39755 -17.33266 -16.72569 -16.70029 -16.50073 -16.16618 -16.02212 -15.61610 -15.33742 -15.22298 -14.71978 -14.38304 -14.11673 -13.89656 -13.85281 -13.69876 -13.42276 -13.22337 -13.10228 -13.03215 -13.01698 -12.95699 -12.92454 -12.68678 -12.60213 -12.42212 -12.32379 -12.10650 -11.78974 -11.53361 -11.36930 -11.31828 -11.07028 -10.92381 -10.52807 -10.30410 -9.38024 -9.26203 -8.18231 -6.28518 -0.86923 0.99164 1.40526 1.41243 1.54140 1.66909 1.71899 1.87766 2.41561 2.62570 2.75067 3.15663 3.17104 3.54238 3.61764 3.82413 3.97121 4.04161 4.07630 4.10185 4.17754 4.20676 4.33734 4.40394 4.43729 4.44406 4.56065 4.68716 4.76241 4.79567 4.83618 4.94213 4.97924 5.03211 5.05443 5.12492 5.21093 5.23999 5.32544 5.56232 5.70652 5.79500 5.89622 5.96275 6.09925 6.21200 6.29214 6.80042 6.89781 7.40998 8.93851 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.007831 B = 0.003835 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3574.616621 B = 7298.741187 C =10359.124223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.120 3.880 3 N -0.375 5.375 4 C 0.066 3.934 5 C -0.242 4.242 6 C 0.178 3.822 7 H 0.075 0.925 8 C -0.572 4.572 9 S 2.423 3.577 10 O -0.980 6.980 11 O -0.974 6.974 12 C -0.580 4.580 13 C 0.051 3.949 14 N -0.544 5.544 15 C 0.073 3.927 16 C -0.093 4.093 17 C 0.028 3.972 18 C -0.537 4.537 19 H 0.062 0.938 20 C -0.001 4.001 21 N -0.935 5.935 22 Si 0.962 3.038 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.281 1.281 26 C 0.065 3.935 27 N -0.334 5.334 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.209 0.791 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.026 0.974 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.059 0.941 44 H -0.012 1.012 45 H -0.016 1.016 46 H 0.262 0.738 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.911 -2.246 18.640 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.001 3.999 3 N -0.158 5.158 4 C -0.082 4.082 5 C -0.255 4.255 6 C 0.068 3.932 7 H 0.092 0.908 8 C -0.703 4.703 9 S 2.610 3.390 10 O -0.977 6.977 11 O -0.971 6.971 12 C -0.711 4.711 13 C -0.077 4.077 14 N -0.269 5.269 15 C -0.054 4.054 16 C -0.131 4.131 17 C -0.010 4.010 18 C -0.575 4.575 19 H 0.080 0.920 20 C -0.199 4.199 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.184 1.184 24 H -0.205 1.205 25 H -0.207 1.207 26 C -0.121 4.121 27 N -0.155 5.155 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.148 0.852 33 H 0.225 0.775 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.176 0.824 37 H 0.174 0.826 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.044 0.956 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.006 0.994 45 H 0.003 0.997 46 H 0.070 0.930 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -12.021 -2.588 18.489 22.205 hybrid contribution 1.434 -0.048 -1.146 1.836 sum -10.587 -2.635 17.343 20.489 Atomic orbital electron populations 1.21985 0.93482 1.03865 1.02159 1.22027 0.96387 0.76159 1.05349 1.48943 1.35644 1.10888 1.20278 1.22856 0.94576 0.94037 0.96709 1.19674 1.08801 0.95126 1.01886 1.19418 0.92693 0.90256 0.90873 0.90752 1.30228 1.13970 1.14178 1.11957 1.07636 0.77099 0.76429 0.77793 1.93545 1.70305 1.57635 1.76235 1.93541 1.66535 1.71419 1.65613 1.30110 1.15579 1.09261 1.16200 1.21951 0.93002 0.93627 0.99141 1.61281 1.27822 1.27358 1.10461 1.22042 0.98389 0.94580 0.90400 1.21477 0.99570 0.97786 0.94218 1.18938 0.94055 0.94713 0.93289 1.21739 1.39749 0.93761 1.02226 0.91984 1.25959 0.96283 0.96356 1.01258 1.70110 1.47215 1.11870 1.28398 0.85448 0.77858 0.79408 0.78640 1.18363 1.20492 1.20680 1.23856 0.94742 0.97417 0.96106 1.77333 1.25521 0.97933 1.14744 0.92353 0.93568 0.88395 0.90130 0.85209 0.77477 0.82740 0.82829 0.82405 0.82588 0.87758 0.92045 0.95596 0.90427 0.92399 0.92291 0.99411 0.99712 0.92960 0.80069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 10.10 71.98 0.73 -1.36 16 2 C 0.12 1.71 7.23 86.38 0.62 2.33 16 3 N -0.38 -8.19 3.68 -348.05 -1.28 -9.47 16 4 C 0.07 1.24 11.36 83.54 0.95 2.19 16 5 C -0.24 -5.35 3.73 -20.14 -0.08 -5.42 16 6 C 0.18 3.46 2.31 44.31 0.10 3.57 16 7 H 0.07 1.34 7.92 -2.39 -0.02 1.32 16 8 C -0.57 -8.62 5.83 72.04 0.42 -8.20 16 9 S 2.42 43.34 5.35 -56.49 -0.30 43.04 16 10 O -0.98 -24.05 18.11 -127.41 -2.31 -26.36 16 11 O -0.97 -23.42 18.10 -127.41 -2.31 -25.73 16 12 C -0.58 -8.76 6.57 72.04 0.47 -8.29 16 13 C 0.05 1.04 5.28 86.44 0.46 1.49 16 14 N -0.54 -12.53 4.19 -876.78 -3.68 -16.21 16 15 C 0.07 2.28 4.46 86.30 0.38 2.66 16 16 C -0.09 -3.55 5.08 30.59 0.16 -3.40 16 17 C 0.03 1.43 4.97 29.85 0.15 1.58 16 18 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 19 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 20 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 21 N -0.94 -57.12 13.29 21.45 0.28 -56.83 16 22 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 26 C 0.06 1.74 9.58 85.24 0.82 2.56 16 27 N -0.33 -9.66 12.42 -57.02 -0.71 -10.37 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.13 0.89 8.07 -2.39 -0.02 0.87 16 33 H 0.21 2.19 8.06 -2.91 -0.02 2.16 16 34 H 0.15 2.05 8.14 -2.38 -0.02 2.03 16 35 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.16 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.10 2.31 5.79 -2.39 -0.01 2.29 16 39 H 0.06 1.18 7.93 -2.38 -0.02 1.17 16 40 H 0.03 0.83 8.13 -2.39 -0.02 0.81 16 41 H 0.08 2.62 4.76 -2.38 -0.01 2.61 16 42 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.06 2.13 6.20 -2.38 -0.01 2.11 16 44 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 45 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 46 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 47 H 0.18 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -81.23 387.59 -1.44 -82.66 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.95 Total: 12.92 kcal Atomic # 6 Polarization: -45.69 SS G_CDS: 5.88 Total: -39.82 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -5.38 Total: -92.88 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -4.61 Total: -52.09 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 43.34 SS G_CDS: -0.30 Total: 43.04 kcal Total: -81.23 -1.44 -82.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279321318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.191 kcal (2) G-P(sol) polarization free energy of solvation -81.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds