Wall clock time and date at job start Wed Apr 1 2020 00:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47346 * 2 1 4 4 C 1.34949 * 126.03825 * 124.99847 * 3 2 1 5 5 C 1.35312 * 107.74868 * 180.02562 * 4 3 2 6 6 C 1.50701 * 126.04156 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.39703 * 339.99792 * 6 5 4 8 8 C 1.53179 * 109.39758 * 99.82705 * 6 5 4 9 9 S 1.81820 * 108.67667 * 182.67976 * 8 6 5 10 10 O 1.42106 * 108.70178 * 61.93877 * 9 8 6 11 11 O 1.42098 * 108.70509 * 193.28363 * 9 8 6 12 12 C 1.81818 * 101.02030 * 307.68364 * 9 8 6 13 13 C 1.53182 * 108.67861 * 52.31761 * 12 9 8 14 14 N 1.46331 * 109.83786 * 297.37072 * 13 12 9 15 15 C 1.46899 * 110.86851 * 197.04207 * 14 13 12 16 16 C 1.52996 * 109.47108 * 298.78092 * 15 14 13 17 17 C 1.52998 * 109.47212 * 184.97398 * 16 15 14 18 18 C 1.50700 * 109.47248 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00171 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00481 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99645 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00546 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47108 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.47326 * 119.99784 * 22 20 18 25 25 H 1.48504 * 109.47459 * 240.00064 * 22 20 18 26 26 C 1.39871 * 107.91945 * 0.26650 * 5 4 3 27 27 N 1.30840 * 108.20023 * 359.55072 * 26 5 4 28 28 H 1.09004 * 109.46829 * 299.99572 * 1 2 3 29 29 H 1.09001 * 109.47376 * 59.99539 * 1 2 3 30 30 H 1.08995 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47029 * 240.00015 * 2 1 3 32 32 H 1.09001 * 109.47376 * 120.00461 * 2 1 3 33 33 H 1.08005 * 126.12217 * 0.04432 * 4 3 2 34 34 H 1.09004 * 109.60441 * 302.43090 * 8 6 5 35 35 H 1.09000 * 109.60908 * 62.92396 * 8 6 5 36 36 H 1.08996 * 109.59993 * 172.07170 * 12 9 8 37 37 H 1.08996 * 109.59684 * 292.55918 * 12 9 8 38 38 H 1.08995 * 109.40252 * 57.49388 * 13 12 9 39 39 H 1.08991 * 109.40009 * 177.32216 * 13 12 9 40 40 H 1.09009 * 109.47152 * 58.77937 * 15 14 13 41 41 H 1.09001 * 109.47385 * 178.77884 * 15 14 13 42 42 H 1.08996 * 109.47287 * 304.97610 * 16 15 14 43 43 H 1.09001 * 109.47189 * 64.97431 * 16 15 14 44 44 H 1.09000 * 109.47558 * 299.99648 * 17 16 15 45 45 H 1.08996 * 109.47139 * 60.00403 * 17 16 15 46 46 H 0.97006 * 120.00154 * 180.02562 * 21 20 18 47 47 H 1.08002 * 125.90082 * 179.73714 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0714 3.2137 0.5464 6 6 3.9549 4.1999 1.2660 7 1 4.1328 3.8513 2.2833 8 6 5.2918 4.3184 0.5276 9 16 6.3707 5.4505 1.4549 10 8 6.6107 4.8990 2.7425 11 8 7.4743 5.8042 0.6326 12 6 5.2845 6.8975 1.6337 13 6 3.9486 6.4379 2.2259 14 7 3.2930 5.5057 1.3080 15 6 1.8682 5.3634 1.6360 16 6 1.7244 4.8033 3.0524 17 6 0.2469 4.5386 3.3486 18 6 0.1052 3.9875 4.7441 19 1 0.9814 3.8403 5.3582 20 6 -1.1429 3.6701 5.2366 21 7 -2.2099 3.8488 4.4886 22 14 -1.3185 2.9863 6.9660 23 1 0.0224 2.8819 7.5955 24 1 -2.1741 3.8935 7.7725 25 1 -1.9435 1.6406 6.9052 26 6 2.3070 3.4744 -0.5956 27 7 1.6801 2.3750 -0.9275 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3193 1.4124 1.7357 34 1 5.7617 3.3370 0.4621 35 1 5.1225 4.7131 -0.4742 36 1 5.7495 7.6236 2.3005 37 1 5.1151 7.3504 0.6569 38 1 4.1269 5.9420 3.1800 39 1 3.3051 7.3035 2.3825 40 1 1.3832 6.3381 1.5797 41 1 1.3982 4.6823 0.9265 42 1 2.2838 3.8713 3.1332 43 1 2.1151 5.5249 3.7699 44 1 -0.3126 5.4706 3.2681 45 1 -0.1439 3.8170 2.6313 46 1 -3.0881 3.6259 4.8352 47 1 2.2471 4.4191 -1.1155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279321323.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:59 Heat of formation + Delta-G solvation = 13.499784 kcal Electronic energy + Delta-G solvation = -29098.190117 eV Core-core repulsion = 25217.307119 eV Total energy + Delta-G solvation = -3880.882999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.34472 -38.78005 -37.01323 -36.09721 -34.49851 -33.97628 -32.55789 -32.08196 -30.23402 -29.60792 -28.61796 -25.96625 -24.38343 -23.62626 -23.30226 -21.71692 -20.80562 -20.20854 -19.37091 -18.67149 -17.17181 -16.58537 -16.47709 -16.29451 -15.76403 -15.67303 -15.34703 -15.20914 -14.48199 -14.44321 -14.14083 -13.95515 -13.70857 -13.11484 -13.02752 -12.74240 -12.55343 -12.47273 -12.39220 -12.22482 -12.08783 -12.05291 -11.89050 -11.87363 -11.84833 -11.36663 -11.16982 -10.95921 -10.82981 -10.74782 -10.60819 -10.45012 -10.16506 -9.73516 -9.52892 -9.21594 -9.19982 -8.38944 -8.25737 -8.14133 -6.03558 -4.06017 -0.05321 2.01259 2.52473 2.62278 2.88251 3.26336 3.34571 3.38568 3.56007 3.61944 4.07627 4.41752 4.44350 4.48411 4.63564 4.73596 4.89475 4.96995 4.99087 5.05923 5.08698 5.12864 5.26750 5.32088 5.38795 5.58548 5.61715 5.66335 5.69760 5.76513 5.77022 5.94096 5.98350 6.11079 6.19787 6.25696 6.51077 6.66221 6.76536 6.95422 7.06896 7.15490 7.20498 7.63484 7.77879 7.83833 7.96097 8.39287 9.01397 9.58334 11.07322 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008946 B = 0.004307 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.248633 B = 6499.033795 C = 8594.068475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.134 3.866 3 N -0.369 5.369 4 C 0.071 3.929 5 C -0.226 4.226 6 C 0.178 3.822 7 H 0.071 0.929 8 C -0.582 4.582 9 S 2.404 3.596 10 O -0.940 6.940 11 O -0.950 6.950 12 C -0.592 4.592 13 C 0.064 3.936 14 N -0.548 5.548 15 C 0.054 3.946 16 C -0.144 4.144 17 C 0.029 3.971 18 C -0.518 4.518 19 H 0.053 0.947 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.888 3.112 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.285 1.285 26 C 0.071 3.929 27 N -0.296 5.296 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.172 0.828 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.014 0.986 45 H 0.013 0.987 46 H 0.259 0.741 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.665 -1.311 -10.866 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.151 5.151 4 C -0.076 4.076 5 C -0.239 4.239 6 C 0.067 3.933 7 H 0.089 0.911 8 C -0.713 4.713 9 S 2.588 3.412 10 O -0.937 6.937 11 O -0.947 6.947 12 C -0.723 4.723 13 C -0.065 4.065 14 N -0.272 5.272 15 C -0.072 4.072 16 C -0.183 4.183 17 C -0.009 4.009 18 C -0.556 4.556 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.716 3.284 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 C -0.115 4.115 27 N -0.117 5.117 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.189 0.811 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.159 0.841 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.032 0.968 45 H 0.031 0.969 46 H 0.069 0.931 47 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 12.562 -1.975 -11.856 17.386 hybrid contribution -0.533 -0.210 2.117 2.193 sum 12.029 -2.185 -9.739 15.630 Atomic orbital electron populations 1.22065 0.93499 1.02697 1.04277 1.21656 0.96430 0.77379 1.03272 1.48566 1.35172 1.10187 1.21214 1.22266 0.94962 0.94672 0.95719 1.19424 1.08619 0.94062 1.01820 1.19324 0.88968 0.88319 0.96646 0.91111 1.30311 1.10238 1.16362 1.14366 1.08316 0.77291 0.79241 0.76311 1.93603 1.84242 1.77220 1.38628 1.93579 1.48173 1.83114 1.69827 1.30195 1.11412 1.19243 1.11432 1.21716 0.92697 0.98154 0.93978 1.61540 1.04849 1.09374 1.51410 1.22489 0.84795 1.01961 0.97961 1.22214 1.01857 0.99548 0.94645 1.18957 0.88924 0.96663 0.96307 1.21280 0.92476 1.42292 0.99602 0.92849 1.25007 0.96068 0.95864 0.97402 1.69980 0.98167 1.48770 1.36465 0.86608 0.78137 0.78706 0.84985 1.19744 1.20988 1.21086 1.23654 0.95010 0.97135 0.95749 1.77318 1.23482 0.96859 1.14035 0.91185 0.91204 0.90994 0.90191 0.88775 0.81127 0.84805 0.84054 0.84781 0.84136 0.91970 0.88094 0.90842 0.89402 0.93184 0.93362 0.96773 0.96855 0.93122 0.79958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 10.10 37.16 0.38 -1.50 16 2 C 0.13 1.36 7.23 -4.04 -0.03 1.33 16 3 N -0.37 -4.91 3.68 -61.37 -0.23 -5.13 16 4 C 0.07 0.91 11.36 -17.22 -0.20 0.72 16 5 C -0.23 -2.94 3.54 -105.05 -0.37 -3.31 16 6 C 0.18 2.11 1.61 -69.01 -0.11 2.00 16 7 H 0.07 0.91 7.00 -51.93 -0.36 0.54 16 8 C -0.58 -5.44 5.83 37.25 0.22 -5.22 16 9 S 2.40 25.14 5.34 -107.50 -0.57 24.56 16 10 O -0.94 -13.19 18.10 -57.81 -1.05 -14.24 16 11 O -0.95 -12.60 18.11 -57.81 -1.05 -13.65 16 12 C -0.59 -5.02 6.58 37.25 0.24 -4.77 16 13 C 0.06 0.70 4.51 -4.04 -0.02 0.68 16 14 N -0.55 -6.59 4.36 -228.64 -1.00 -7.59 16 15 C 0.05 0.83 4.72 -3.83 -0.02 0.81 16 16 C -0.14 -2.73 4.48 -26.73 -0.12 -2.85 16 17 C 0.03 0.72 4.97 -27.88 -0.14 0.59 16 18 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 19 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 22 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.07 0.96 9.50 -17.36 -0.16 0.80 16 27 N -0.30 -4.40 12.42 30.63 0.38 -4.02 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.17 1.79 8.06 -52.48 -0.42 1.37 16 34 H 0.13 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.75 7.19 -51.93 -0.37 0.37 16 39 H 0.10 1.05 7.89 -51.93 -0.41 0.64 16 40 H 0.07 1.10 8.04 -51.92 -0.42 0.68 16 41 H 0.09 1.43 4.90 -51.93 -0.25 1.18 16 42 H 0.05 0.95 6.48 -51.93 -0.34 0.62 16 43 H 0.05 0.90 7.09 -51.93 -0.37 0.54 16 44 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 47 H 0.18 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 385.40 15.07 5.81 5.81 Total: -1.00 -36.38 385.40 -10.28 -46.67 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -7.56 Total: 0.81 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -0.74 Total: -23.84 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -0.11 Total: -42.46 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -2.09 Total: -27.89 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 25.14 SS G_CDS: -0.57 Total: 24.56 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.38 -10.28 -46.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279321323.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.169 kcal (2) G-P(sol) polarization free energy of solvation -36.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds