Wall clock time and date at job start Wed Apr 1 2020 00:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47346 * 2 1 4 4 C 1.34949 * 126.03825 * 124.99847 * 3 2 1 5 5 C 1.35312 * 107.74868 * 180.02562 * 4 3 2 6 6 C 1.50701 * 126.04156 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.39703 * 339.99792 * 6 5 4 8 8 C 1.53179 * 109.39758 * 99.82705 * 6 5 4 9 9 S 1.81820 * 108.67667 * 182.67976 * 8 6 5 10 10 O 1.42106 * 108.70178 * 61.93877 * 9 8 6 11 11 O 1.42098 * 108.70509 * 193.28363 * 9 8 6 12 12 C 1.81818 * 101.02030 * 307.68364 * 9 8 6 13 13 C 1.53182 * 108.67861 * 52.31761 * 12 9 8 14 14 N 1.46331 * 109.83786 * 297.37072 * 13 12 9 15 15 C 1.46899 * 110.86851 * 197.04207 * 14 13 12 16 16 C 1.52996 * 109.47108 * 298.78092 * 15 14 13 17 17 C 1.52998 * 109.47212 * 184.97398 * 16 15 14 18 18 C 1.50700 * 109.47248 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00171 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00481 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99645 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00546 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47108 * 0.02562 * 22 20 18 24 24 H 1.48510 * 109.47326 * 119.99784 * 22 20 18 25 25 H 1.48504 * 109.47459 * 240.00064 * 22 20 18 26 26 C 1.39871 * 107.91945 * 0.26650 * 5 4 3 27 27 N 1.30840 * 108.20023 * 359.55072 * 26 5 4 28 28 H 1.09004 * 109.46829 * 299.99572 * 1 2 3 29 29 H 1.09001 * 109.47376 * 59.99539 * 1 2 3 30 30 H 1.08995 * 109.47032 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47029 * 240.00015 * 2 1 3 32 32 H 1.09001 * 109.47376 * 120.00461 * 2 1 3 33 33 H 1.08005 * 126.12217 * 0.04432 * 4 3 2 34 34 H 1.09004 * 109.60441 * 302.43090 * 8 6 5 35 35 H 1.09000 * 109.60908 * 62.92396 * 8 6 5 36 36 H 1.08996 * 109.59993 * 172.07170 * 12 9 8 37 37 H 1.08996 * 109.59684 * 292.55918 * 12 9 8 38 38 H 1.08995 * 109.40252 * 57.49388 * 13 12 9 39 39 H 1.08991 * 109.40009 * 177.32216 * 13 12 9 40 40 H 1.09009 * 109.47152 * 58.77937 * 15 14 13 41 41 H 1.09001 * 109.47385 * 178.77884 * 15 14 13 42 42 H 1.08996 * 109.47287 * 304.97610 * 16 15 14 43 43 H 1.09001 * 109.47189 * 64.97431 * 16 15 14 44 44 H 1.09000 * 109.47558 * 299.99648 * 17 16 15 45 45 H 1.08996 * 109.47139 * 60.00403 * 17 16 15 46 46 H 0.97006 * 120.00154 * 180.02562 * 21 20 18 47 47 H 1.08002 * 125.90082 * 179.73714 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9211 0.8939 5 6 3.0714 3.2137 0.5464 6 6 3.9549 4.1999 1.2660 7 1 4.1328 3.8513 2.2833 8 6 5.2918 4.3184 0.5276 9 16 6.3707 5.4505 1.4549 10 8 6.6107 4.8990 2.7425 11 8 7.4743 5.8042 0.6326 12 6 5.2845 6.8975 1.6337 13 6 3.9486 6.4379 2.2259 14 7 3.2930 5.5057 1.3080 15 6 1.8682 5.3634 1.6360 16 6 1.7244 4.8033 3.0524 17 6 0.2469 4.5386 3.3486 18 6 0.1052 3.9875 4.7441 19 1 0.9814 3.8403 5.3582 20 6 -1.1429 3.6701 5.2366 21 7 -2.2099 3.8488 4.4886 22 14 -1.3185 2.9863 6.9660 23 1 0.0224 2.8819 7.5955 24 1 -2.1741 3.8935 7.7725 25 1 -1.9435 1.6406 6.9052 26 6 2.3070 3.4744 -0.5956 27 7 1.6801 2.3750 -0.9275 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.3193 1.4124 1.7357 34 1 5.7617 3.3370 0.4621 35 1 5.1225 4.7131 -0.4742 36 1 5.7495 7.6236 2.3005 37 1 5.1151 7.3504 0.6569 38 1 4.1269 5.9420 3.1800 39 1 3.3051 7.3035 2.3825 40 1 1.3832 6.3381 1.5797 41 1 1.3982 4.6823 0.9265 42 1 2.2838 3.8713 3.1332 43 1 2.1151 5.5249 3.7699 44 1 -0.3126 5.4706 3.2681 45 1 -0.1439 3.8170 2.6313 46 1 -3.0881 3.6259 4.8352 47 1 2.2471 4.4191 -1.1155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279321323.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:58 Heat of formation + Delta-G solvation = -13.538800 kcal Electronic energy + Delta-G solvation = -29099.362598 eV Core-core repulsion = 25217.307119 eV Total energy + Delta-G solvation = -3882.055480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.34034 -39.81933 -37.96469 -37.04095 -35.85832 -35.34981 -33.83609 -33.37178 -31.28957 -30.94070 -29.54958 -27.65012 -25.27689 -24.93109 -24.34911 -23.15036 -21.91273 -21.42870 -20.40038 -19.57946 -18.55327 -17.97250 -17.49931 -17.34147 -16.72079 -16.64703 -16.59199 -16.24897 -16.08111 -15.55239 -15.23562 -15.13892 -14.68059 -14.37418 -14.13037 -14.08188 -13.66674 -13.52287 -13.42321 -13.24139 -13.21195 -13.09341 -13.00291 -12.96908 -12.93167 -12.75213 -12.50241 -12.42982 -12.32887 -12.27110 -11.83539 -11.53944 -11.34769 -11.30276 -11.23170 -11.02504 -10.56156 -10.25728 -9.32516 -9.21976 -8.19841 -6.30884 -0.87091 1.01543 1.36403 1.37979 1.50246 1.68223 1.74896 1.91061 2.38954 2.65857 2.76141 3.12946 3.18532 3.55955 3.63276 3.81766 3.98610 4.05197 4.09172 4.10985 4.19870 4.23739 4.33034 4.36822 4.42002 4.47462 4.48987 4.69365 4.72475 4.79009 4.85718 4.93139 4.97688 5.01014 5.06249 5.10089 5.22778 5.24079 5.30732 5.52772 5.73635 5.77073 5.86626 5.93878 6.08299 6.19696 6.26422 6.82846 6.86656 7.38566 8.91052 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008946 B = 0.004307 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3129.248633 B = 6499.033795 C = 8594.068475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 N -0.375 5.375 4 C 0.059 3.941 5 C -0.234 4.234 6 C 0.175 3.825 7 H 0.061 0.939 8 C -0.571 4.571 9 S 2.413 3.587 10 O -0.980 6.980 11 O -0.979 6.979 12 C -0.574 4.574 13 C 0.054 3.946 14 N -0.532 5.532 15 C 0.067 3.933 16 C -0.129 4.129 17 C 0.037 3.963 18 C -0.537 4.537 19 H 0.055 0.945 20 C 0.003 3.997 21 N -0.932 5.932 22 Si 0.957 3.043 23 H -0.263 1.263 24 H -0.279 1.279 25 H -0.279 1.279 26 C 0.067 3.933 27 N -0.329 5.329 28 H 0.033 0.967 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.191 0.809 34 H 0.148 0.852 35 H 0.163 0.837 36 H 0.157 0.843 37 H 0.167 0.833 38 H 0.051 0.949 39 H 0.112 0.888 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.052 0.948 44 H -0.010 1.010 45 H -0.018 1.018 46 H 0.262 0.738 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.949 -1.214 -10.726 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.007 3.993 3 N -0.157 5.157 4 C -0.089 4.089 5 C -0.246 4.246 6 C 0.064 3.936 7 H 0.079 0.921 8 C -0.702 4.702 9 S 2.601 3.399 10 O -0.978 6.978 11 O -0.976 6.976 12 C -0.706 4.706 13 C -0.075 4.075 14 N -0.255 5.255 15 C -0.060 4.060 16 C -0.168 4.168 17 C -0.001 4.001 18 C -0.575 4.575 19 H 0.074 0.926 20 C -0.194 4.194 21 N -0.572 5.572 22 Si 0.782 3.218 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.204 1.204 26 C -0.119 4.119 27 N -0.150 5.150 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.208 0.792 34 H 0.166 0.834 35 H 0.181 0.819 36 H 0.175 0.825 37 H 0.185 0.815 38 H 0.069 0.931 39 H 0.130 0.870 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.008 0.992 45 H 0.000 1.000 46 H 0.071 0.929 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 13.891 -1.888 -11.718 18.271 hybrid contribution -1.000 -0.245 2.061 2.304 sum 12.891 -2.133 -9.657 16.248 Atomic orbital electron populations 1.22000 0.94631 1.03675 1.01576 1.21950 0.95440 0.76486 1.05469 1.48838 1.35109 1.10877 1.20910 1.22724 0.94902 0.95131 0.96113 1.19580 1.08874 0.94385 1.01811 1.19372 0.89866 0.87899 0.96433 0.92149 1.30221 1.08105 1.17143 1.14766 1.07867 0.77299 0.79625 0.75095 1.93551 1.85267 1.78391 1.40561 1.93543 1.50195 1.83673 1.70162 1.30068 1.08892 1.18177 1.13444 1.21865 0.94034 0.98135 0.93491 1.61577 1.03053 1.09698 1.51221 1.22221 0.87136 1.01617 0.95026 1.22024 0.97497 0.99886 0.97394 1.18807 0.92400 0.94294 0.94553 1.21699 0.92707 1.42289 1.00809 0.92648 1.25892 0.95746 0.96118 1.01683 1.70109 0.98737 1.49826 1.38535 0.85525 0.78469 0.78056 0.79780 1.18713 1.20442 1.20449 1.23931 0.94657 0.97373 0.95978 1.77251 1.24570 0.97812 1.15383 0.94794 0.92780 0.88210 0.88063 0.86474 0.79218 0.83394 0.81940 0.82496 0.81470 0.93107 0.86983 0.90278 0.90448 0.93329 0.92932 0.99185 0.99983 0.92939 0.78618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 10.10 71.98 0.73 -2.93 16 2 C 0.13 2.46 7.23 86.38 0.62 3.08 16 3 N -0.38 -9.85 3.68 -348.06 -1.28 -11.13 16 4 C 0.06 1.47 11.36 83.54 0.95 2.42 16 5 C -0.23 -5.86 3.54 -20.14 -0.07 -5.93 16 6 C 0.17 3.90 1.61 44.31 0.07 3.97 16 7 H 0.06 1.49 7.00 -2.39 -0.02 1.48 16 8 C -0.57 -9.43 5.83 72.04 0.42 -9.01 16 9 S 2.41 46.14 5.34 -56.49 -0.30 45.84 16 10 O -0.98 -26.73 18.10 -127.39 -2.31 -29.04 16 11 O -0.98 -24.35 18.11 -127.39 -2.31 -26.65 16 12 C -0.57 -7.91 6.58 72.04 0.47 -7.44 16 13 C 0.05 1.05 4.51 86.47 0.39 1.44 16 14 N -0.53 -11.84 4.36 -877.27 -3.83 -15.66 16 15 C 0.07 2.02 4.72 86.30 0.41 2.42 16 16 C -0.13 -4.92 4.48 30.59 0.14 -4.78 16 17 C 0.04 1.90 4.97 29.85 0.15 2.05 16 18 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 19 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 20 C 0.00 0.19 5.46 84.65 0.46 0.65 16 21 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 22 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 23 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 26 C 0.07 1.76 9.50 85.24 0.81 2.57 16 27 N -0.33 -9.80 12.42 -57.02 -0.71 -10.51 16 28 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 30 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.12 1.71 8.07 -2.39 -0.02 1.69 16 33 H 0.19 3.80 8.06 -2.91 -0.02 3.77 16 34 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.16 2.03 8.14 -2.39 -0.02 2.02 16 36 H 0.16 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.17 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 1.14 7.19 -2.39 -0.02 1.12 16 39 H 0.11 2.01 7.89 -2.39 -0.02 1.99 16 40 H 0.08 2.29 8.04 -2.38 -0.02 2.27 16 41 H 0.08 2.53 4.90 -2.39 -0.01 2.52 16 42 H 0.05 1.85 6.48 -2.39 -0.02 1.84 16 43 H 0.05 1.94 7.09 -2.39 -0.02 1.93 16 44 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 45 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 46 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 47 H 0.20 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -80.22 385.40 -1.68 -81.90 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.95 Total: 16.61 kcal Atomic # 6 Polarization: -47.07 SS G_CDS: 5.78 Total: -41.28 kcal Atomic # 7 Polarization: -87.71 SS G_CDS: -5.53 Total: -93.24 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -4.61 Total: -55.69 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 46.14 SS G_CDS: -0.30 Total: 45.84 kcal Total: -80.22 -1.68 -81.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279321323.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.363 kcal (2) G-P(sol) polarization free energy of solvation -80.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds