Wall clock time and date at job start Wed Apr 1 2020 00:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47417 * 2 1 4 4 C 1.36879 * 126.39933 * 265.19144 * 3 2 1 5 5 C 1.34670 * 106.81546 * 180.25087 * 4 3 2 6 6 N 1.34124 * 108.02495 * 359.74359 * 5 4 3 7 7 C 1.30508 * 109.25478 * 359.97438 * 6 5 4 8 8 C 1.50700 * 125.65081 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.57923 * 182.82554 * 8 7 6 10 10 C 1.53180 * 109.58769 * 303.25741 * 8 7 6 11 11 C 1.53047 * 109.31410 * 174.42255 * 10 8 7 12 12 C 1.53044 * 109.53520 * 298.63458 * 11 10 8 13 13 C 1.53193 * 109.31010 * 61.36362 * 12 11 10 14 14 N 1.46923 * 109.58333 * 62.54834 * 8 7 6 15 15 S 1.65600 * 120.63350 * 6.57936 * 14 8 7 16 16 O 1.42099 * 104.27767 * 30.42551 * 15 14 8 17 17 O 1.42105 * 104.27912 * 158.28008 * 15 14 8 18 18 C 1.81401 * 104.45056 * 274.35295 * 15 14 8 19 19 C 1.52996 * 109.47037 * 179.97438 * 18 15 14 20 20 C 1.50702 * 109.47141 * 180.02562 * 19 18 15 21 21 H 1.08000 * 119.99676 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00247 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99967 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00249 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47103 * 59.99898 * 24 22 20 26 26 H 1.48489 * 109.47541 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46912 * 300.00397 * 24 22 20 28 28 H 1.08996 * 109.47367 * 59.99941 * 1 2 3 29 29 H 1.09005 * 109.47232 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46877 * 299.99417 * 1 2 3 31 31 H 1.09005 * 109.46805 * 240.00195 * 2 1 3 32 32 H 1.08999 * 109.47375 * 120.00596 * 2 1 3 33 33 H 1.08002 * 126.59049 * 359.97438 * 4 3 2 34 34 H 1.08003 * 125.99224 * 179.72034 * 5 4 3 35 35 H 1.09000 * 109.50120 * 294.37006 * 10 8 7 36 36 H 1.09005 * 109.50218 * 54.47197 * 10 8 7 37 37 H 1.08997 * 109.46054 * 178.61577 * 11 10 8 38 38 H 1.08996 * 109.44550 * 58.64682 * 11 10 8 39 39 H 1.08997 * 109.50048 * 301.41400 * 12 11 10 40 40 H 1.08996 * 109.52482 * 181.32741 * 12 11 10 41 41 H 1.09006 * 109.58347 * 185.57952 * 13 12 11 42 42 H 1.09003 * 109.70692 * 65.22139 * 13 12 11 43 43 H 1.09001 * 109.47064 * 299.99882 * 18 15 14 44 44 H 1.09000 * 109.46691 * 60.00068 * 18 15 14 45 45 H 1.09001 * 109.47182 * 299.99914 * 19 18 15 46 46 H 1.08996 * 109.47688 * 60.00363 * 19 18 15 47 47 H 0.97002 * 119.99828 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3763 2.1162 -1.0979 5 6 2.7689 3.3231 -0.6476 6 7 2.6485 3.3270 0.6882 7 6 2.1957 2.1683 1.0829 8 6 1.9235 1.7719 2.5111 9 1 1.5999 0.7316 2.5461 10 6 3.1975 1.9449 3.3438 11 6 2.8802 1.6749 4.8165 12 6 1.8404 2.6839 5.3093 13 6 0.5509 2.5193 4.4987 14 7 0.8728 2.6336 3.0697 15 16 0.0669 3.7136 2.1071 16 8 0.0638 3.1044 0.8233 17 8 -1.1471 3.9644 2.8019 18 6 1.1177 5.1922 2.1076 19 6 0.4732 6.2762 1.2413 20 6 1.3465 7.5044 1.2412 21 1 2.2691 7.5109 1.8025 22 6 0.9676 8.6196 0.5245 23 7 -0.1561 8.6118 -0.1587 24 14 2.0497 10.1423 0.5249 25 1 3.3863 9.7998 -0.0243 26 1 1.4238 11.1947 -0.3150 27 1 2.1993 10.6428 1.9150 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.3529 1.7893 -2.1270 34 1 3.1196 4.1440 -1.2555 35 1 3.9553 1.2408 3.0001 36 1 3.5694 2.9634 3.2326 37 1 3.7904 1.7733 5.4080 38 1 2.4851 0.6647 4.9233 39 1 2.2250 3.6955 5.1795 40 1 1.6320 2.5065 6.3643 41 1 -0.1578 3.2993 4.7772 42 1 0.1141 1.5406 4.6977 43 1 1.2275 5.5596 3.1280 44 1 2.0987 4.9409 1.7044 45 1 0.3638 5.9085 0.2210 46 1 -0.5079 6.5277 1.6440 47 1 -0.4228 9.3965 -0.6626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281763182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:41 Heat of formation + Delta-G solvation = -3.297106 kcal Electronic energy + Delta-G solvation = -30480.077470 eV Core-core repulsion = 26598.466104 eV Total energy + Delta-G solvation = -3881.611366 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.92233 -38.44714 -36.44597 -35.21446 -34.85484 -33.64856 -32.57095 -31.92717 -30.91993 -29.89696 -28.26899 -25.41478 -24.58652 -23.86093 -23.33335 -21.61030 -21.06262 -20.06418 -19.92621 -18.13208 -17.57357 -16.72311 -16.16626 -16.03046 -15.30439 -15.08101 -14.76727 -14.57922 -14.42071 -14.39906 -14.21247 -13.63767 -13.62074 -13.39745 -13.18162 -12.97992 -12.60143 -12.43178 -12.36040 -11.99520 -11.63857 -11.53797 -11.45926 -11.34273 -11.30029 -11.20260 -11.04085 -10.94201 -10.80694 -10.78669 -10.50418 -10.29276 -10.22113 -9.56870 -9.36858 -9.20763 -9.11173 -8.62221 -8.33760 -7.93973 -5.96997 -4.00143 1.03280 2.27429 2.95424 3.21532 3.36922 3.40614 3.43518 3.56716 4.20293 4.46038 4.55148 4.55874 4.65328 4.78050 4.82187 4.87630 4.94575 5.06070 5.08115 5.18129 5.22287 5.28448 5.38126 5.55081 5.58298 5.61246 5.65031 5.70317 5.82643 5.82968 5.93972 6.01498 6.07239 6.13512 6.15671 6.18808 6.31906 6.33359 6.61589 6.75711 6.92199 7.22522 7.45696 7.57863 7.63199 7.98123 8.38665 8.39759 9.03132 9.62796 11.14347 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.004760 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.236551 B = 5880.460340 C = 6660.314834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.102 3.898 3 N -0.429 5.429 4 C -0.045 4.045 5 C -0.003 4.003 6 N -0.486 5.486 7 C 0.193 3.807 8 C 0.254 3.746 9 H 0.080 0.920 10 C -0.124 4.124 11 C -0.114 4.114 12 C -0.139 4.139 13 C 0.122 3.878 14 N -1.000 6.000 15 S 2.586 3.414 16 O -0.954 6.954 17 O -0.980 6.980 18 C -0.590 4.590 19 C 0.038 3.962 20 C -0.506 4.506 21 H 0.060 0.940 22 C 0.056 3.944 23 N -0.895 5.895 24 Si 0.897 3.103 25 H -0.275 1.275 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.066 0.934 43 H 0.105 0.895 44 H 0.162 0.838 45 H 0.029 0.971 46 H 0.021 0.979 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.488 -21.229 5.640 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.021 4.021 3 N -0.112 5.112 4 C -0.178 4.178 5 C -0.151 4.151 6 N -0.207 5.207 7 C -0.069 4.069 8 C 0.146 3.854 9 H 0.098 0.902 10 C -0.164 4.164 11 C -0.151 4.151 12 C -0.178 4.178 13 C -0.003 4.003 14 N -0.836 5.836 15 S 2.688 3.312 16 O -0.943 6.943 17 O -0.971 6.971 18 C -0.724 4.724 19 C -0.001 4.001 20 C -0.546 4.546 21 H 0.078 0.922 22 C -0.145 4.145 23 N -0.534 5.534 24 Si 0.725 3.275 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.202 1.202 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.185 0.815 34 H 0.186 0.814 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.123 0.877 44 H 0.179 0.821 45 H 0.047 0.953 46 H 0.039 0.961 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.616 -20.866 5.608 22.324 hybrid contribution 0.708 0.562 -0.543 1.055 sum 6.324 -20.304 5.066 21.861 Atomic orbital electron populations 1.22099 0.93780 1.01815 1.04544 1.21779 0.96186 0.80461 1.03643 1.44928 1.47763 1.12055 1.06460 1.22473 1.09064 0.94205 0.92011 1.22114 1.05458 0.96775 0.90752 1.69923 1.19806 1.17687 1.13286 1.22594 1.05124 0.88994 0.90142 1.18782 0.88597 0.93699 0.84349 0.90236 1.21925 0.95700 1.04197 0.94544 1.21465 0.99109 0.99060 0.95513 1.21966 0.95813 1.00669 0.99321 1.21382 0.96956 1.02956 0.79021 1.58110 1.51523 1.54175 1.19808 1.05802 0.75256 0.76770 0.73406 1.93514 1.86586 1.74445 1.39740 1.93493 1.43114 1.86170 1.74303 1.30687 1.17198 1.15382 1.09165 1.18814 0.95814 0.91705 0.93738 1.20980 1.06632 0.97070 1.29931 0.92168 1.25045 0.95281 0.98836 0.95381 1.69962 1.22164 1.29941 1.31357 0.86580 0.80609 0.82334 0.78022 1.20099 1.21270 1.20210 0.91332 0.91502 0.91477 0.89284 0.89725 0.81453 0.81356 0.91131 0.89558 0.91477 0.92049 0.90852 0.90821 0.88780 0.91574 0.87697 0.82050 0.95277 0.96059 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 10.20 37.16 0.38 -1.38 16 2 C 0.10 0.97 6.43 -4.04 -0.03 0.95 16 3 N -0.43 -5.85 2.38 -113.90 -0.27 -6.12 16 4 C -0.04 -0.64 11.49 -16.56 -0.19 -0.83 16 5 C 0.00 -0.05 11.67 -17.81 -0.21 -0.26 16 6 N -0.49 -8.69 6.93 -10.81 -0.07 -8.77 16 7 C 0.19 2.97 3.68 -155.40 -0.57 2.40 16 8 C 0.25 3.26 3.27 -68.76 -0.22 3.04 16 9 H 0.08 0.84 6.83 -51.93 -0.35 0.49 16 10 C -0.12 -1.34 5.35 -26.61 -0.14 -1.48 16 11 C -0.11 -0.99 5.88 -26.68 -0.16 -1.14 16 12 C -0.14 -1.36 6.08 -26.61 -0.16 -1.52 16 13 C 0.12 1.48 6.34 -3.71 -0.02 1.46 16 14 N -1.00 -14.88 3.22 -107.70 -0.35 -15.23 16 15 S 2.59 51.96 4.78 -107.50 -0.51 51.45 16 16 O -0.95 -20.19 13.35 -57.54 -0.77 -20.96 16 17 O -0.98 -22.32 16.58 -57.54 -0.95 -23.28 16 18 C -0.59 -13.02 5.77 37.16 0.21 -12.81 16 19 C 0.04 1.06 4.98 -27.88 -0.14 0.92 16 20 C -0.51 -14.78 9.11 -34.44 -0.31 -15.09 16 21 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 24 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.88 7.75 -51.93 -0.40 0.48 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.62 7.25 -51.93 -0.38 0.25 16 33 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.17 2.70 8.06 -52.48 -0.42 2.28 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.26 6.97 -51.93 -0.36 0.89 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 2.15 8.14 -51.92 -0.42 1.72 16 44 H 0.16 3.51 5.22 -51.92 -0.27 3.23 16 45 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 379.07 15.07 5.71 5.71 Total: -1.00 -37.03 379.07 -10.81 -47.84 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.65 Total: 3.42 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -1.66 Total: -24.19 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.04 Total: -57.06 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -1.72 Total: -44.24 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 51.96 SS G_CDS: -0.51 Total: 51.45 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.03 -10.81 -47.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281763182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.545 kcal (2) G-P(sol) polarization free energy of solvation -37.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds