Wall clock time and date at job start Wed Apr 1 2020 00:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47417 * 2 1 4 4 C 1.36879 * 126.39933 * 265.19144 * 3 2 1 5 5 C 1.34670 * 106.81546 * 180.25087 * 4 3 2 6 6 N 1.34124 * 108.02495 * 359.74359 * 5 4 3 7 7 C 1.30508 * 109.25478 * 359.97438 * 6 5 4 8 8 C 1.50700 * 125.65081 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.57923 * 182.82554 * 8 7 6 10 10 C 1.53180 * 109.58769 * 303.25741 * 8 7 6 11 11 C 1.53047 * 109.31410 * 174.42255 * 10 8 7 12 12 C 1.53044 * 109.53520 * 298.63458 * 11 10 8 13 13 C 1.53193 * 109.31010 * 61.36362 * 12 11 10 14 14 N 1.46923 * 109.58333 * 62.54834 * 8 7 6 15 15 S 1.65600 * 120.63350 * 6.57936 * 14 8 7 16 16 O 1.42099 * 104.27767 * 30.42551 * 15 14 8 17 17 O 1.42105 * 104.27912 * 158.28008 * 15 14 8 18 18 C 1.81401 * 104.45056 * 274.35295 * 15 14 8 19 19 C 1.52996 * 109.47037 * 179.97438 * 18 15 14 20 20 C 1.50702 * 109.47141 * 180.02562 * 19 18 15 21 21 H 1.08000 * 119.99676 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00247 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99967 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00249 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47103 * 59.99898 * 24 22 20 26 26 H 1.48489 * 109.47541 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.46912 * 300.00397 * 24 22 20 28 28 H 1.08996 * 109.47367 * 59.99941 * 1 2 3 29 29 H 1.09005 * 109.47232 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46877 * 299.99417 * 1 2 3 31 31 H 1.09005 * 109.46805 * 240.00195 * 2 1 3 32 32 H 1.08999 * 109.47375 * 120.00596 * 2 1 3 33 33 H 1.08002 * 126.59049 * 359.97438 * 4 3 2 34 34 H 1.08003 * 125.99224 * 179.72034 * 5 4 3 35 35 H 1.09000 * 109.50120 * 294.37006 * 10 8 7 36 36 H 1.09005 * 109.50218 * 54.47197 * 10 8 7 37 37 H 1.08997 * 109.46054 * 178.61577 * 11 10 8 38 38 H 1.08996 * 109.44550 * 58.64682 * 11 10 8 39 39 H 1.08997 * 109.50048 * 301.41400 * 12 11 10 40 40 H 1.08996 * 109.52482 * 181.32741 * 12 11 10 41 41 H 1.09006 * 109.58347 * 185.57952 * 13 12 11 42 42 H 1.09003 * 109.70692 * 65.22139 * 13 12 11 43 43 H 1.09001 * 109.47064 * 299.99882 * 18 15 14 44 44 H 1.09000 * 109.46691 * 60.00068 * 18 15 14 45 45 H 1.09001 * 109.47182 * 299.99914 * 19 18 15 46 46 H 1.08996 * 109.47688 * 60.00363 * 19 18 15 47 47 H 0.97002 * 119.99828 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3763 2.1162 -1.0979 5 6 2.7689 3.3231 -0.6476 6 7 2.6485 3.3270 0.6882 7 6 2.1957 2.1683 1.0829 8 6 1.9235 1.7719 2.5111 9 1 1.5999 0.7316 2.5461 10 6 3.1975 1.9449 3.3438 11 6 2.8802 1.6749 4.8165 12 6 1.8404 2.6839 5.3093 13 6 0.5509 2.5193 4.4987 14 7 0.8728 2.6336 3.0697 15 16 0.0669 3.7136 2.1071 16 8 0.0638 3.1044 0.8233 17 8 -1.1471 3.9644 2.8019 18 6 1.1177 5.1922 2.1076 19 6 0.4732 6.2762 1.2413 20 6 1.3465 7.5044 1.2412 21 1 2.2691 7.5109 1.8025 22 6 0.9676 8.6196 0.5245 23 7 -0.1561 8.6118 -0.1587 24 14 2.0497 10.1423 0.5249 25 1 3.3863 9.7998 -0.0243 26 1 1.4238 11.1947 -0.3150 27 1 2.1993 10.6428 1.9150 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.3529 1.7893 -2.1270 34 1 3.1196 4.1440 -1.2555 35 1 3.9553 1.2408 3.0001 36 1 3.5694 2.9634 3.2326 37 1 3.7904 1.7733 5.4080 38 1 2.4851 0.6647 4.9233 39 1 2.2250 3.6955 5.1795 40 1 1.6320 2.5065 6.3643 41 1 -0.1578 3.2993 4.7772 42 1 0.1141 1.5406 4.6977 43 1 1.2275 5.5596 3.1280 44 1 2.0987 4.9409 1.7044 45 1 0.3638 5.9085 0.2210 46 1 -0.5079 6.5277 1.6440 47 1 -0.4228 9.3965 -0.6626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281763182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:40 Heat of formation + Delta-G solvation = -28.422228 kcal Electronic energy + Delta-G solvation = -30481.166977 eV Core-core repulsion = 26598.466104 eV Total energy + Delta-G solvation = -3882.700873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.03158 -39.41940 -38.13685 -36.91658 -35.96020 -35.69144 -33.51824 -33.08975 -32.89236 -30.89394 -29.34082 -27.54616 -25.65243 -24.76192 -24.23157 -23.50400 -22.29435 -21.24318 -20.89100 -19.59393 -18.99259 -18.43458 -17.61433 -17.36402 -16.94181 -16.51855 -16.15118 -15.99117 -15.53875 -15.50869 -15.09384 -15.05846 -14.62202 -14.46598 -14.45678 -14.38635 -14.26167 -13.67957 -13.62767 -13.40574 -13.03605 -12.93048 -12.91106 -12.89235 -12.76902 -12.73562 -12.35346 -12.21602 -12.14244 -12.08727 -11.92439 -11.70169 -11.58114 -11.39719 -11.02603 -10.71268 -10.56696 -10.30987 -9.91457 -9.11072 -8.24577 -6.38081 -0.58532 1.15195 1.37576 1.42639 1.50666 1.77574 2.07434 2.31167 2.38461 2.90898 3.07522 3.18435 3.29698 3.71762 3.83941 3.91319 4.04643 4.09243 4.16960 4.20632 4.24364 4.31839 4.33994 4.43806 4.45002 4.63140 4.72534 4.75075 4.79178 4.83272 4.88610 4.94589 5.00542 5.04676 5.26546 5.27574 5.29255 5.30884 5.32828 5.39941 5.52619 5.58135 5.67891 5.70637 6.05037 6.11614 6.45803 6.73480 7.23742 7.30850 8.87903 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.004760 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.236551 B = 5880.460340 C = 6660.314834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.428 5.428 4 C -0.032 4.032 5 C -0.050 4.050 6 N -0.523 5.523 7 C 0.182 3.818 8 C 0.249 3.751 9 H 0.115 0.885 10 C -0.121 4.121 11 C -0.107 4.107 12 C -0.137 4.137 13 C 0.111 3.889 14 N -0.990 5.990 15 S 2.612 3.388 16 O -0.967 6.967 17 O -1.011 7.011 18 C -0.597 4.597 19 C 0.043 3.957 20 C -0.531 4.531 21 H 0.067 0.933 22 C -0.003 4.003 23 N -0.936 5.936 24 Si 0.974 3.026 25 H -0.264 1.264 26 H -0.280 1.280 27 H -0.263 1.263 28 H 0.042 0.958 29 H 0.101 0.899 30 H 0.039 0.961 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.200 0.800 34 H 0.159 0.841 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.113 0.887 44 H 0.166 0.834 45 H -0.003 1.003 46 H -0.011 1.011 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.198 -24.033 7.119 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.110 5.110 4 C -0.166 4.166 5 C -0.198 4.198 6 N -0.245 5.245 7 C -0.081 4.081 8 C 0.142 3.858 9 H 0.133 0.867 10 C -0.161 4.161 11 C -0.145 4.145 12 C -0.176 4.176 13 C -0.013 4.013 14 N -0.830 5.830 15 S 2.711 3.289 16 O -0.956 6.956 17 O -1.001 7.001 18 C -0.729 4.729 19 C 0.004 3.996 20 C -0.570 4.570 21 H 0.085 0.915 22 C -0.200 4.200 23 N -0.576 5.576 24 Si 0.797 3.203 25 H -0.188 1.188 26 H -0.205 1.205 27 H -0.188 1.188 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.058 0.942 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.217 0.783 34 H 0.176 0.824 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.132 0.868 44 H 0.183 0.817 45 H 0.015 0.985 46 H 0.007 0.993 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.336 -23.665 7.094 25.772 hybrid contribution 0.143 1.308 -1.010 1.659 sum 7.479 -22.357 6.084 24.347 Atomic orbital electron populations 1.22091 0.94812 1.03254 1.01897 1.22209 0.95216 0.78490 1.06808 1.45228 1.46755 1.13431 1.05588 1.22899 1.06884 0.93286 0.93546 1.22260 1.08178 0.98237 0.91106 1.69762 1.21190 1.19685 1.13857 1.23058 1.04668 0.88740 0.91642 1.19264 0.88859 0.94523 0.83175 0.86721 1.21934 0.94921 1.03281 0.95952 1.21474 0.99465 0.99813 0.93714 1.21993 0.94785 1.00308 1.00531 1.21745 0.98286 1.04054 0.77248 1.57717 1.51891 1.52605 1.20766 1.04670 0.74506 0.76279 0.73446 1.93490 1.86751 1.74143 1.41182 1.93448 1.44771 1.86815 1.75062 1.30673 1.17856 1.16038 1.08294 1.18562 0.94707 0.93501 0.92841 1.21397 1.07142 0.98092 1.30380 0.91469 1.26108 0.96748 1.02663 0.94517 1.70114 1.24176 1.31215 1.32116 0.85370 0.78653 0.77508 0.78749 1.18836 1.20495 1.18785 0.93890 0.88000 0.94176 0.86208 0.86592 0.78320 0.82399 0.89029 0.92271 0.89831 0.89475 0.92698 0.87992 0.90642 0.88382 0.86817 0.81697 0.98488 0.99274 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 10.20 71.98 0.73 -2.39 16 2 C 0.09 1.45 6.43 86.38 0.56 2.01 16 3 N -0.43 -11.00 2.38 -514.27 -1.22 -12.23 16 4 C -0.03 -0.90 11.49 83.09 0.95 0.06 16 5 C -0.05 -1.80 11.67 83.52 0.97 -0.82 16 6 N -0.52 -19.37 6.93 -188.12 -1.30 -20.67 16 7 C 0.18 5.46 3.68 138.12 0.51 5.96 16 8 C 0.25 5.84 3.27 44.23 0.14 5.98 16 9 H 0.12 1.92 6.83 -2.38 -0.02 1.91 16 10 C -0.12 -2.29 5.35 30.67 0.16 -2.13 16 11 C -0.11 -1.42 5.88 30.62 0.18 -1.24 16 12 C -0.14 -2.31 6.08 30.67 0.19 -2.13 16 13 C 0.11 2.48 6.34 86.36 0.55 3.02 16 14 N -0.99 -28.56 3.22 -494.66 -1.59 -30.15 16 15 S 2.61 108.84 4.78 -56.49 -0.27 108.57 16 16 O -0.97 -42.41 13.35 -127.65 -1.70 -44.11 16 17 O -1.01 -47.83 16.58 -127.65 -2.12 -49.95 16 18 C -0.60 -27.97 5.77 71.98 0.42 -27.56 16 19 C 0.04 2.53 4.98 29.85 0.15 2.68 16 20 C -0.53 -32.43 9.11 25.60 0.23 -32.19 16 21 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 22 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 23 N -0.94 -60.30 13.29 21.45 0.28 -60.02 16 24 Si 0.97 46.16 29.54 68.60 2.03 48.18 16 25 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 27 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 28 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.04 0.98 7.75 -2.39 -0.02 0.97 16 31 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.12 1.11 7.25 -2.39 -0.02 1.09 16 33 H 0.20 4.05 8.06 -2.91 -0.02 4.02 16 34 H 0.16 5.60 8.06 -2.91 -0.02 5.58 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 1.46 8.10 -2.38 -0.02 1.44 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.99 6.97 -2.38 -0.02 1.97 16 42 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.11 4.94 8.14 -2.39 -0.02 4.92 16 44 H 0.17 7.63 5.22 -2.39 -0.01 7.62 16 45 H 0.00 -0.21 8.14 -2.39 -0.02 -0.22 16 46 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 47 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -86.67 379.07 1.26 -85.41 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.95 Total: 23.39 kcal Atomic # 6 Polarization: -54.64 SS G_CDS: 6.21 Total: -48.44 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -3.84 Total: -123.06 kcal Atomic # 8 Polarization: -90.24 SS G_CDS: -3.82 Total: -94.06 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Atomic # 16 Polarization: 108.84 SS G_CDS: -0.27 Total: 108.57 kcal Total: -86.67 1.26 -85.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281763182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.992 kcal (2) G-P(sol) polarization free energy of solvation -86.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds