Wall clock time and date at job start Wed Apr 1 2020 00:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46869 * 2 1 4 4 C 1.36876 * 126.40416 * 265.26087 * 3 2 1 5 5 C 1.34665 * 106.82156 * 180.19389 * 4 3 2 6 6 N 1.34127 * 108.01668 * 359.58498 * 5 4 3 7 7 C 1.30500 * 109.25894 * 0.26753 * 6 5 4 8 8 C 1.50704 * 125.64894 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.58042 * 195.01724 * 8 7 6 10 10 C 1.53194 * 109.58466 * 74.74082 * 8 7 6 11 11 C 1.53038 * 109.30805 * 185.57681 * 10 8 7 12 12 C 1.53035 * 109.54203 * 61.36246 * 11 10 8 13 13 C 1.53187 * 109.31433 * 298.63503 * 12 11 10 14 14 N 1.46917 * 109.58774 * 315.30308 * 8 7 6 15 15 S 1.65606 * 120.63044 * 353.40152 * 14 8 7 16 16 O 1.42105 * 104.27246 * 206.06799 * 15 14 8 17 17 O 1.42098 * 104.27696 * 333.92704 * 15 14 8 18 18 C 1.81401 * 104.44955 * 90.00088 * 15 14 8 19 19 C 1.53002 * 109.47146 * 180.02562 * 18 15 14 20 20 C 1.50692 * 109.47123 * 179.97438 * 19 18 15 21 21 H 1.07999 * 120.00512 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99881 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00216 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00185 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47432 * 89.99847 * 24 22 20 26 26 H 1.48498 * 109.47327 * 210.00169 * 24 22 20 27 27 H 1.48500 * 109.46831 * 329.99769 * 24 22 20 28 28 H 1.09002 * 109.46906 * 59.99853 * 1 2 3 29 29 H 1.09004 * 109.46760 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47455 * 299.99301 * 1 2 3 31 31 H 1.09002 * 109.47215 * 240.00654 * 2 1 3 32 32 H 1.08997 * 109.46914 * 120.00646 * 2 1 3 33 33 H 1.08002 * 126.59064 * 0.08563 * 4 3 2 34 34 H 1.08002 * 125.99463 * 179.85418 * 5 4 3 35 35 H 1.09003 * 109.49604 * 305.52532 * 10 8 7 36 36 H 1.08997 * 109.50121 * 65.62341 * 10 8 7 37 37 H 1.09006 * 109.46099 * 181.38314 * 11 10 8 38 38 H 1.08998 * 109.46264 * 301.35171 * 11 10 8 39 39 H 1.09004 * 109.49740 * 58.58869 * 12 11 10 40 40 H 1.09002 * 109.50001 * 178.67770 * 12 11 10 41 41 H 1.09001 * 109.59250 * 174.42035 * 13 12 11 42 42 H 1.08997 * 109.59029 * 294.70313 * 13 12 11 43 43 H 1.09003 * 109.46780 * 299.99630 * 18 15 14 44 44 H 1.08992 * 109.47606 * 59.99769 * 18 15 14 45 45 H 1.08998 * 109.46859 * 299.99882 * 19 18 15 46 46 H 1.09001 * 109.47038 * 59.99316 * 19 18 15 47 47 H 0.97000 * 119.99897 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3749 2.1168 -1.0979 5 6 2.7667 3.3240 -0.6477 6 7 2.6438 3.3286 0.6879 7 6 2.1961 2.1682 1.0830 8 6 1.9232 1.7719 2.5112 9 1 1.8171 0.6890 2.5759 10 6 0.6338 2.4440 2.9931 11 6 0.4363 2.1508 4.4821 12 6 1.6089 2.7290 5.2776 13 6 2.9094 2.0601 4.8215 14 7 3.0359 2.2097 3.3649 15 16 4.4040 2.8632 2.6989 16 8 5.4226 2.5889 3.6510 17 8 4.4555 2.3103 1.3909 18 6 4.0651 4.6437 2.6245 19 6 5.2696 5.3673 2.0191 20 6 4.9879 6.8463 1.9567 21 1 4.0439 7.2318 2.3127 22 6 5.9352 7.7076 1.4450 23 7 7.0849 7.2384 1.0118 24 14 5.5863 9.5411 1.3683 25 1 6.0412 10.1847 2.6268 26 1 6.3128 10.1356 0.2176 27 1 4.1273 9.7606 1.1993 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.3488 1.7910 -2.1273 34 1 3.1144 4.1460 -1.2559 35 1 0.7060 3.5209 2.8409 36 1 -0.2132 2.0525 2.4298 37 1 -0.4933 2.6074 4.8221 38 1 0.3892 1.0729 4.6369 39 1 1.6719 3.8032 5.1039 40 1 1.4560 2.5403 6.3402 41 1 3.7575 2.5369 5.3129 42 1 2.8857 1.0013 5.0793 43 1 3.1862 4.8207 2.0044 44 1 3.8820 5.0212 3.6304 45 1 6.1488 5.1904 2.6387 46 1 5.4523 4.9897 1.0130 47 1 7.7512 7.8443 0.6515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281763187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:43 Heat of formation + Delta-G solvation = 10.663562 kcal Electronic energy + Delta-G solvation = -30271.460994 eV Core-core repulsion = 26390.455008 eV Total energy + Delta-G solvation = -3881.005986 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93373 -38.45133 -36.41308 -35.15398 -34.84569 -33.62569 -32.57346 -31.90829 -30.90160 -29.99834 -28.28678 -25.39056 -24.63343 -23.78609 -23.50737 -21.56383 -21.07240 -20.12207 -19.91206 -18.11736 -17.46429 -16.75242 -16.22189 -15.88472 -15.27176 -15.23841 -14.87471 -14.49347 -14.42343 -14.39690 -14.14207 -13.91359 -13.58730 -13.48292 -13.10765 -12.95434 -12.79375 -12.43881 -12.35222 -12.20949 -11.68769 -11.59277 -11.48321 -11.29776 -11.24580 -11.14730 -11.00269 -10.94717 -10.82650 -10.75539 -10.49701 -10.25769 -10.17798 -9.54499 -9.28976 -9.15808 -9.04837 -8.59383 -8.32261 -7.85926 -5.95371 -3.98345 1.13122 2.32506 2.84731 3.29025 3.35923 3.41558 3.45385 3.61379 4.20364 4.45891 4.48700 4.60988 4.64135 4.72925 4.79081 4.84274 4.88431 5.02085 5.06663 5.16815 5.21711 5.26445 5.32267 5.39701 5.40583 5.56073 5.59176 5.66574 5.76329 5.81965 5.84407 5.91617 6.03360 6.04411 6.13525 6.17504 6.28265 6.35840 6.60181 6.80065 6.94875 7.25316 7.46451 7.62332 7.67385 7.99909 8.41045 8.43315 9.05175 9.64396 11.15959 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.004527 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.018299 B = 6184.076470 C = 7087.896664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.441 5.441 4 C -0.061 4.061 5 C 0.014 3.986 6 N -0.479 5.479 7 C 0.203 3.797 8 C 0.253 3.747 9 H 0.080 0.920 10 C -0.125 4.125 11 C -0.113 4.113 12 C -0.139 4.139 13 C 0.123 3.877 14 N -1.000 6.000 15 S 2.596 3.404 16 O -0.985 6.985 17 O -0.955 6.955 18 C -0.576 4.576 19 C 0.037 3.963 20 C -0.506 4.506 21 H 0.060 0.940 22 C 0.056 3.944 23 N -0.895 5.895 24 Si 0.896 3.104 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.168 0.832 34 H 0.169 0.831 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.153 0.847 44 H 0.100 0.900 45 H 0.021 0.979 46 H 0.031 0.969 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.608 -16.483 2.088 24.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.025 4.025 3 N -0.125 5.125 4 C -0.193 4.193 5 C -0.135 4.135 6 N -0.200 5.200 7 C -0.059 4.059 8 C 0.145 3.855 9 H 0.097 0.903 10 C -0.165 4.165 11 C -0.151 4.151 12 C -0.178 4.178 13 C -0.002 4.002 14 N -0.835 5.835 15 S 2.697 3.303 16 O -0.976 6.976 17 O -0.944 6.944 18 C -0.710 4.710 19 C -0.002 4.002 20 C -0.546 4.546 21 H 0.078 0.922 22 C -0.146 4.146 23 N -0.534 5.534 24 Si 0.723 3.277 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.198 1.198 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.185 0.815 34 H 0.186 0.814 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.170 0.830 44 H 0.119 0.881 45 H 0.039 0.961 46 H 0.049 0.951 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.508 -16.510 2.260 23.456 hybrid contribution -0.518 0.776 -0.638 1.131 sum -17.027 -15.733 1.622 23.239 Atomic orbital electron populations 1.22204 0.94320 1.02891 1.03331 1.21787 0.95246 0.80964 1.04457 1.44916 1.49372 1.11572 1.06607 1.22439 1.10732 0.94109 0.91992 1.22010 1.03725 0.97261 0.90483 1.69878 1.17047 1.19475 1.13598 1.22554 1.04448 0.88624 0.90245 1.18766 0.87369 0.97930 0.81456 0.90270 1.21970 0.95514 1.02738 0.96278 1.21456 0.98357 1.00870 0.94421 1.21974 0.94771 1.01409 0.99676 1.21363 0.98696 1.01047 0.79109 1.58076 1.33629 1.78615 1.13219 1.05513 0.72128 0.79319 0.73361 1.93483 1.55296 1.85382 1.63393 1.93589 1.84959 1.77290 1.38560 1.30512 1.12542 1.18775 1.09217 1.18822 0.89054 0.96157 0.96140 1.21025 1.01649 0.90793 1.41084 0.92217 1.25048 0.95100 0.98981 0.95448 1.69973 1.06464 1.35050 1.41876 0.86535 0.78354 0.85189 0.77575 1.20665 1.21194 1.19802 0.91731 0.90791 0.91738 0.89040 0.89452 0.81479 0.81418 0.89906 0.91157 0.91461 0.91959 0.90817 0.90758 0.88884 0.91585 0.82957 0.88113 0.96065 0.95054 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.24 37.16 0.38 -0.71 16 2 C 0.10 0.86 6.53 -4.04 -0.03 0.83 16 3 N -0.44 -5.89 2.75 -113.90 -0.31 -6.20 16 4 C -0.06 -0.87 11.58 -16.57 -0.19 -1.06 16 5 C 0.01 0.24 11.38 -17.81 -0.20 0.03 16 6 N -0.48 -8.89 5.57 -10.81 -0.06 -8.95 16 7 C 0.20 3.17 4.36 -155.41 -0.68 2.50 16 8 C 0.25 3.29 3.23 -68.75 -0.22 3.06 16 9 H 0.08 0.85 6.86 -51.93 -0.36 0.50 16 10 C -0.13 -1.31 5.35 -26.61 -0.14 -1.45 16 11 C -0.11 -0.96 5.88 -26.69 -0.16 -1.11 16 12 C -0.14 -1.35 6.08 -26.62 -0.16 -1.51 16 13 C 0.12 1.51 6.31 -3.69 -0.02 1.49 16 14 N -1.00 -15.23 3.23 -107.68 -0.35 -15.58 16 15 S 2.60 53.55 4.74 -107.50 -0.51 53.04 16 16 O -0.99 -22.94 16.73 -57.54 -0.96 -23.90 16 17 O -0.95 -21.38 12.85 -57.54 -0.74 -22.12 16 18 C -0.58 -12.72 5.60 37.16 0.21 -12.52 16 19 C 0.04 1.04 4.98 -27.89 -0.14 0.90 16 20 C -0.51 -14.75 9.11 -34.44 -0.31 -15.07 16 21 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 22 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 24 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.44 7.32 -51.93 -0.38 0.06 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.71 7.13 -51.93 -0.37 0.34 16 33 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.17 2.80 8.06 -52.49 -0.42 2.38 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.61 7.32 -51.93 -0.38 0.23 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.09 1.24 7.11 -51.93 -0.37 0.87 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.15 3.29 5.86 -51.92 -0.30 2.99 16 44 H 0.10 2.04 8.14 -51.93 -0.42 1.62 16 45 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 377.56 15.07 5.69 5.69 Total: -1.00 -38.06 377.56 -10.91 -48.97 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.62 Total: 2.04 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -1.77 Total: -23.08 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.02 Total: -57.70 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -1.70 Total: -46.02 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 53.55 SS G_CDS: -0.51 Total: 53.04 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.06 -10.91 -48.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281763187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.633 kcal (2) G-P(sol) polarization free energy of solvation -38.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds