Wall clock time and date at job start Wed Apr 1 2020 00:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46869 * 2 1 4 4 C 1.36876 * 126.40416 * 265.26087 * 3 2 1 5 5 C 1.34665 * 106.82156 * 180.19389 * 4 3 2 6 6 N 1.34127 * 108.01668 * 359.58498 * 5 4 3 7 7 C 1.30500 * 109.25894 * 0.26753 * 6 5 4 8 8 C 1.50704 * 125.64894 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.58042 * 195.01724 * 8 7 6 10 10 C 1.53194 * 109.58466 * 74.74082 * 8 7 6 11 11 C 1.53038 * 109.30805 * 185.57681 * 10 8 7 12 12 C 1.53035 * 109.54203 * 61.36246 * 11 10 8 13 13 C 1.53187 * 109.31433 * 298.63503 * 12 11 10 14 14 N 1.46917 * 109.58774 * 315.30308 * 8 7 6 15 15 S 1.65606 * 120.63044 * 353.40152 * 14 8 7 16 16 O 1.42105 * 104.27246 * 206.06799 * 15 14 8 17 17 O 1.42098 * 104.27696 * 333.92704 * 15 14 8 18 18 C 1.81401 * 104.44955 * 90.00088 * 15 14 8 19 19 C 1.53002 * 109.47146 * 180.02562 * 18 15 14 20 20 C 1.50692 * 109.47123 * 179.97438 * 19 18 15 21 21 H 1.07999 * 120.00512 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99881 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00216 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00185 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47432 * 89.99847 * 24 22 20 26 26 H 1.48498 * 109.47327 * 210.00169 * 24 22 20 27 27 H 1.48500 * 109.46831 * 329.99769 * 24 22 20 28 28 H 1.09002 * 109.46906 * 59.99853 * 1 2 3 29 29 H 1.09004 * 109.46760 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47455 * 299.99301 * 1 2 3 31 31 H 1.09002 * 109.47215 * 240.00654 * 2 1 3 32 32 H 1.08997 * 109.46914 * 120.00646 * 2 1 3 33 33 H 1.08002 * 126.59064 * 0.08563 * 4 3 2 34 34 H 1.08002 * 125.99463 * 179.85418 * 5 4 3 35 35 H 1.09003 * 109.49604 * 305.52532 * 10 8 7 36 36 H 1.08997 * 109.50121 * 65.62341 * 10 8 7 37 37 H 1.09006 * 109.46099 * 181.38314 * 11 10 8 38 38 H 1.08998 * 109.46264 * 301.35171 * 11 10 8 39 39 H 1.09004 * 109.49740 * 58.58869 * 12 11 10 40 40 H 1.09002 * 109.50001 * 178.67770 * 12 11 10 41 41 H 1.09001 * 109.59250 * 174.42035 * 13 12 11 42 42 H 1.08997 * 109.59029 * 294.70313 * 13 12 11 43 43 H 1.09003 * 109.46780 * 299.99630 * 18 15 14 44 44 H 1.08992 * 109.47606 * 59.99769 * 18 15 14 45 45 H 1.08998 * 109.46859 * 299.99882 * 19 18 15 46 46 H 1.09001 * 109.47038 * 59.99316 * 19 18 15 47 47 H 0.97000 * 119.99897 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3749 2.1168 -1.0979 5 6 2.7667 3.3240 -0.6477 6 7 2.6438 3.3286 0.6879 7 6 2.1961 2.1682 1.0830 8 6 1.9232 1.7719 2.5112 9 1 1.8171 0.6890 2.5759 10 6 0.6338 2.4440 2.9931 11 6 0.4363 2.1508 4.4821 12 6 1.6089 2.7290 5.2776 13 6 2.9094 2.0601 4.8215 14 7 3.0359 2.2097 3.3649 15 16 4.4040 2.8632 2.6989 16 8 5.4226 2.5889 3.6510 17 8 4.4555 2.3103 1.3909 18 6 4.0651 4.6437 2.6245 19 6 5.2696 5.3673 2.0191 20 6 4.9879 6.8463 1.9567 21 1 4.0439 7.2318 2.3127 22 6 5.9352 7.7076 1.4450 23 7 7.0849 7.2384 1.0118 24 14 5.5863 9.5411 1.3683 25 1 6.0412 10.1847 2.6268 26 1 6.3128 10.1356 0.2176 27 1 4.1273 9.7606 1.1993 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.3488 1.7910 -2.1273 34 1 3.1144 4.1460 -1.2559 35 1 0.7060 3.5209 2.8409 36 1 -0.2132 2.0525 2.4298 37 1 -0.4933 2.6074 4.8221 38 1 0.3892 1.0729 4.6369 39 1 1.6719 3.8032 5.1039 40 1 1.4560 2.5403 6.3402 41 1 3.7575 2.5369 5.3129 42 1 2.8857 1.0013 5.0793 43 1 3.1862 4.8207 2.0044 44 1 3.8820 5.0212 3.6304 45 1 6.1488 5.1904 2.6387 46 1 5.4523 4.9897 1.0130 47 1 7.7512 7.8443 0.6515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281763187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:42 Heat of formation + Delta-G solvation = -15.153627 kcal Electronic energy + Delta-G solvation = -30272.580512 eV Core-core repulsion = 26390.455008 eV Total energy + Delta-G solvation = -3882.125504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.04109 -39.41901 -38.11011 -36.85738 -35.90494 -35.69045 -33.52107 -33.05256 -32.88587 -30.86252 -29.35704 -27.52262 -25.68308 -24.58989 -24.35661 -23.47152 -22.29915 -21.21940 -20.93791 -19.56179 -18.93040 -18.39981 -17.67278 -17.25801 -16.93201 -16.51350 -16.17065 -15.99567 -15.61235 -15.48330 -15.04803 -14.93311 -14.66612 -14.55503 -14.43913 -14.42741 -14.18825 -13.73425 -13.64094 -13.39281 -12.98500 -12.92116 -12.88590 -12.83669 -12.74005 -12.60654 -12.39086 -12.21821 -12.08637 -12.02510 -11.91798 -11.67273 -11.58763 -11.39203 -10.99639 -10.70383 -10.53848 -10.21540 -9.91747 -9.03590 -8.23050 -6.36416 -0.50831 1.22740 1.38221 1.41553 1.52903 1.74143 2.07396 2.35591 2.39358 2.99687 3.09093 3.20403 3.41672 3.66907 3.83163 3.93529 4.03225 4.10340 4.17791 4.20039 4.25662 4.31702 4.36042 4.44036 4.45937 4.64373 4.73009 4.74798 4.79788 4.87994 4.92092 4.97321 4.98068 5.04652 5.20814 5.26438 5.29043 5.33125 5.34744 5.41627 5.52016 5.55980 5.70329 5.72584 6.07765 6.13467 6.46146 6.75631 7.27020 7.32335 8.89662 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.004527 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.018299 B = 6184.076470 C = 7087.896664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.086 3.914 3 N -0.438 5.438 4 C -0.042 4.042 5 C -0.040 4.040 6 N -0.522 5.522 7 C 0.190 3.810 8 C 0.247 3.753 9 H 0.113 0.887 10 C -0.121 4.121 11 C -0.107 4.107 12 C -0.138 4.138 13 C 0.111 3.889 14 N -0.991 5.991 15 S 2.620 3.380 16 O -1.016 7.016 17 O -0.975 6.975 18 C -0.578 4.578 19 C 0.041 3.959 20 C -0.530 4.530 21 H 0.068 0.932 22 C -0.004 4.004 23 N -0.937 5.937 24 Si 0.975 3.025 25 H -0.269 1.269 26 H -0.280 1.280 27 H -0.260 1.260 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.202 0.798 34 H 0.153 0.847 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.102 0.898 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.156 0.844 44 H 0.113 0.887 45 H -0.011 1.011 46 H -0.002 1.002 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.854 -18.180 3.091 27.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.034 4.034 3 N -0.121 5.121 4 C -0.175 4.175 5 C -0.187 4.187 6 N -0.244 5.244 7 C -0.073 4.073 8 C 0.140 3.860 9 H 0.131 0.869 10 C -0.161 4.161 11 C -0.145 4.145 12 C -0.177 4.177 13 C -0.013 4.013 14 N -0.831 5.831 15 S 2.719 3.281 16 O -1.007 7.007 17 O -0.964 6.964 18 C -0.710 4.710 19 C 0.002 3.998 20 C -0.569 4.569 21 H 0.086 0.914 22 C -0.202 4.202 23 N -0.577 5.577 24 Si 0.798 3.202 25 H -0.194 1.194 26 H -0.205 1.205 27 H -0.184 1.184 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.219 0.781 34 H 0.171 0.829 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.174 0.826 44 H 0.131 0.869 45 H 0.007 0.993 46 H 0.016 0.984 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.770 -18.209 3.270 27.076 hybrid contribution 0.458 1.173 -0.969 1.589 sum -19.312 -17.036 2.301 25.855 Atomic orbital electron populations 1.22163 0.92233 1.04534 1.02993 1.22234 0.96950 0.78378 1.05877 1.45234 1.48289 1.12960 1.05567 1.22853 1.08131 0.92908 0.93633 1.22114 1.06879 0.98932 0.90824 1.69694 1.18642 1.21782 1.14256 1.23023 1.04091 0.88315 0.91863 1.19270 0.87198 0.99906 0.79607 0.86935 1.21978 0.94767 1.01012 0.98328 1.21473 0.98263 1.02514 0.92209 1.22000 0.93852 1.00195 1.01605 1.21737 0.99667 1.03117 0.76789 1.57656 1.32932 1.77527 1.14965 1.04393 0.72861 0.78122 0.72717 1.93437 1.57677 1.85338 1.64227 1.93558 1.85843 1.77040 1.39945 1.30451 1.09980 1.21260 1.09321 1.18580 0.90310 0.96822 0.94060 1.21438 1.02201 0.91778 1.41445 0.91390 1.26119 0.94602 1.04879 0.94553 1.70127 1.07668 1.37271 1.42605 0.85307 0.78866 0.77959 0.78068 1.19383 1.20487 1.18405 0.92373 0.88080 0.91796 0.87399 0.88387 0.78079 0.82913 0.92473 0.88749 0.89631 0.89452 0.92539 0.87923 0.90671 0.88581 0.82581 0.86889 0.99286 0.98355 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 10.24 71.98 0.74 -0.73 16 2 C 0.09 1.23 6.53 86.38 0.56 1.79 16 3 N -0.44 -11.06 2.75 -514.28 -1.41 -12.47 16 4 C -0.04 -1.18 11.58 83.09 0.96 -0.22 16 5 C -0.04 -1.47 11.38 83.52 0.95 -0.52 16 6 N -0.52 -20.22 5.57 -188.13 -1.05 -21.27 16 7 C 0.19 5.83 4.36 138.13 0.60 6.44 16 8 C 0.25 5.89 3.23 44.23 0.14 6.04 16 9 H 0.11 1.96 6.86 -2.39 -0.02 1.94 16 10 C -0.12 -2.20 5.35 30.67 0.16 -2.03 16 11 C -0.11 -1.36 5.88 30.62 0.18 -1.18 16 12 C -0.14 -2.28 6.08 30.67 0.19 -2.09 16 13 C 0.11 2.51 6.31 86.35 0.54 3.06 16 14 N -0.99 -29.34 3.23 -494.58 -1.60 -30.94 16 15 S 2.62 112.26 4.74 -56.49 -0.27 111.99 16 16 O -1.02 -49.20 16.73 -127.65 -2.14 -51.33 16 17 O -0.97 -45.40 12.85 -127.65 -1.64 -47.04 16 18 C -0.58 -27.11 5.60 71.98 0.40 -26.70 16 19 C 0.04 2.44 4.98 29.85 0.15 2.59 16 20 C -0.53 -32.30 9.11 25.60 0.23 -32.06 16 21 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 22 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 23 N -0.94 -60.51 13.29 21.45 0.28 -60.23 16 24 Si 0.97 46.18 29.54 68.60 2.03 48.20 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.06 0.61 7.32 -2.39 -0.02 0.59 16 31 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.10 1.21 7.13 -2.39 -0.02 1.19 16 33 H 0.20 3.95 8.06 -2.91 -0.02 3.92 16 34 H 0.15 5.73 8.06 -2.91 -0.02 5.71 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.09 1.27 7.32 -2.39 -0.02 1.26 16 37 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.98 7.11 -2.39 -0.02 1.96 16 42 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.16 7.20 5.86 -2.39 -0.01 7.19 16 44 H 0.11 4.84 8.14 -2.39 -0.02 4.82 16 45 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 46 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -88.75 377.56 1.44 -87.31 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 0.95 Total: 21.16 kcal Atomic # 6 Polarization: -51.67 SS G_CDS: 6.28 Total: -45.39 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -3.78 Total: -124.91 kcal Atomic # 8 Polarization: -94.60 SS G_CDS: -3.78 Total: -98.37 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Atomic # 16 Polarization: 112.26 SS G_CDS: -0.27 Total: 111.99 kcal Total: -88.75 1.44 -87.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281763187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.160 kcal (2) G-P(sol) polarization free energy of solvation -88.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds