Wall clock time and date at job start Wed Apr 1 2020 00:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46938 * 2 1 4 4 N 1.39802 * 125.34341 * 270.26603 * 3 2 1 5 5 C 1.30194 * 110.13372 * 180.17641 * 4 3 2 6 6 C 1.45973 * 107.58860 * 359.60915 * 5 4 3 7 7 C 1.39654 * 134.12401 * 180.27011 * 6 5 4 8 8 C 1.39511 * 117.94967 * 179.97438 * 7 6 5 9 9 C 1.47691 * 120.40763 * 180.02562 * 8 7 6 10 10 O 1.21574 * 119.99577 * 235.17480 * 9 8 7 11 11 N 1.34771 * 120.00289 * 55.17747 * 9 8 7 12 12 C 1.46496 * 120.00295 * 185.58025 * 11 9 8 13 13 C 1.50699 * 109.47352 * 89.99439 * 12 11 9 14 14 H 1.08001 * 119.99791 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99973 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00014 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99996 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47312 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47176 * 119.99899 * 17 15 13 20 20 H 1.48499 * 109.47444 * 239.99659 * 17 15 13 21 21 C 1.46497 * 119.99799 * 5.57313 * 11 9 8 22 22 C 1.53004 * 109.47102 * 94.96933 * 21 11 9 23 23 C 1.47195 * 109.47230 * 180.02562 * 22 21 11 24 24 N 7.76226 * 66.08867 * 16.24098 * 2 1 3 25 25 C 1.40184 * 119.18245 * 359.97438 * 8 7 6 26 26 C 1.50702 * 119.31380 * 180.02562 * 25 8 7 27 27 N 1.31186 * 121.37435 * 359.97438 * 25 8 7 28 28 C 1.32936 * 121.84163 * 0.03624 * 27 25 8 29 29 H 1.08994 * 109.46595 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47178 * 299.99806 * 1 2 3 31 31 H 1.09001 * 109.47559 * 59.99907 * 1 2 3 32 32 H 1.09000 * 109.46869 * 240.00600 * 2 1 3 33 33 H 1.08993 * 109.47324 * 119.99824 * 2 1 3 34 34 H 1.08008 * 126.20799 * 179.87958 * 5 4 3 35 35 H 1.07996 * 121.02686 * 359.97438 * 7 6 5 36 36 H 1.08997 * 109.47321 * 209.99835 * 12 11 9 37 37 H 1.09004 * 109.46637 * 329.99957 * 12 11 9 38 38 H 0.97006 * 119.99810 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.47276 * 214.96223 * 21 11 9 40 40 H 1.09000 * 109.47462 * 334.97081 * 21 11 9 41 41 H 1.09003 * 109.46475 * 299.99780 * 22 21 11 42 42 H 1.08994 * 109.47506 * 59.99641 * 22 21 11 43 43 H 1.09001 * 109.46663 * 84.89889 * 26 25 8 44 44 H 1.08997 * 109.47298 * 204.89958 * 26 25 8 45 45 H 1.09003 * 109.47076 * 324.90627 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2829 2.1455 -1.1403 5 6 2.7066 3.3282 -0.7988 6 6 2.7269 3.3853 0.6597 7 6 3.0738 4.3679 1.5895 8 6 2.9626 4.0544 2.9444 9 6 3.3146 5.0530 3.9740 10 8 4.1348 4.7810 4.8292 11 7 2.7265 6.2656 3.9657 12 6 3.1624 7.2976 4.9096 13 6 4.2702 8.1097 4.2898 14 1 4.6148 7.8803 3.2923 15 6 4.8438 9.1455 4.9962 16 7 4.4244 9.4246 6.2111 17 14 6.2165 10.1527 4.2276 18 1 6.5022 9.6404 2.8633 19 1 5.8001 11.5757 4.1454 20 1 7.4391 10.0423 5.0633 21 6 1.6514 6.5517 3.0126 22 6 0.2977 6.3034 3.6811 23 6 -0.7826 6.5903 2.7233 24 7 -1.6162 6.8129 1.9846 25 6 2.5116 2.7803 3.3163 26 6 2.3898 2.4386 4.7791 27 7 2.1925 1.8794 2.4177 28 6 2.2805 2.1269 1.1145 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.9877 4.1244 -1.4724 35 1 3.4176 5.3404 1.2696 36 1 2.3226 7.9505 5.1475 37 1 3.5252 6.8251 5.8225 38 1 4.8278 10.1536 6.7079 39 1 1.7144 7.5926 2.6955 40 1 1.7526 5.9005 2.1444 41 1 0.2346 5.2624 3.9982 42 1 0.1963 6.9545 4.5493 43 1 1.4250 2.7813 5.1530 44 1 2.4668 1.3590 4.9077 45 1 3.1895 2.9287 5.3345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281845089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:20 Heat of formation + Delta-G solvation = 95.626318 kcal Electronic energy + Delta-G solvation = -29577.420443 eV Core-core repulsion = 25596.947518 eV Total energy + Delta-G solvation = -3980.472925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.74840 -39.73028 -37.88071 -36.85439 -35.36139 -34.83016 -33.07152 -32.37065 -31.84751 -30.88249 -29.57538 -27.96332 -27.03703 -24.77777 -24.03429 -23.63313 -22.76851 -22.01498 -20.76368 -19.21861 -18.05335 -17.51744 -17.03903 -16.49644 -16.26282 -15.86168 -15.80233 -15.37707 -14.73262 -14.61484 -14.36992 -14.24702 -14.10018 -13.86918 -13.65003 -13.43637 -13.04672 -12.86158 -12.84254 -12.43514 -12.38991 -12.32876 -12.26933 -12.03125 -11.86733 -11.71657 -11.58444 -11.33598 -11.18078 -11.03383 -10.94219 -10.72811 -10.39528 -10.24891 -9.79766 -9.73197 -9.12205 -8.96814 -8.52753 -8.34851 -7.91132 -6.13942 -4.19017 0.64479 0.96622 1.94695 2.28144 2.71839 2.82562 3.12272 3.25212 3.33967 3.36193 3.52878 3.68674 3.92362 4.09454 4.18892 4.37174 4.48592 4.59791 4.69606 4.75412 4.84286 4.95824 5.02096 5.12643 5.14557 5.21811 5.26568 5.30610 5.44751 5.47063 5.49719 5.64561 5.72382 5.79306 5.80584 5.92919 6.02818 6.07568 6.17356 6.37801 6.68741 6.87422 7.27452 7.28757 7.35736 7.58161 7.80349 7.82133 8.10408 8.14478 8.71756 8.88728 9.46974 10.94099 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012443 B = 0.003327 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.681988 B = 8414.259901 C = 8830.389226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 N -0.393 5.393 4 N -0.245 5.245 5 C 0.093 3.907 6 C -0.240 4.240 7 C 0.039 3.961 8 C -0.212 4.212 9 C 0.567 3.433 10 O -0.521 6.521 11 N -0.588 5.588 12 C 0.244 3.756 13 C -0.531 4.531 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.892 5.892 17 Si 0.896 3.104 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.110 3.890 22 C -0.048 4.048 23 C 0.217 3.783 24 N -0.445 5.445 25 C 0.242 3.758 26 C -0.122 4.122 27 N -0.508 5.508 28 C 0.329 3.671 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.202 0.798 35 H 0.150 0.850 36 H 0.037 0.963 37 H 0.051 0.949 38 H 0.264 0.736 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.119 0.881 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.093 -14.830 -9.253 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.019 3.981 3 N -0.184 5.184 4 N -0.056 5.056 5 C -0.106 4.106 6 C -0.250 4.250 7 C 0.011 3.989 8 C -0.220 4.220 9 C 0.352 3.648 10 O -0.398 6.398 11 N -0.318 5.318 12 C 0.125 3.875 13 C -0.570 4.570 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.016 4.016 22 C -0.090 4.090 23 C -0.101 4.101 24 N -0.122 5.122 25 C 0.092 3.908 26 C -0.179 4.179 27 N -0.224 5.224 28 C 0.090 3.910 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.219 0.781 35 H 0.167 0.833 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.123 0.877 42 H 0.137 0.863 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.504 -16.311 -10.525 21.193 hybrid contribution 1.490 1.875 0.111 2.397 sum -7.013 -14.437 -10.415 19.133 Atomic orbital electron populations 1.22187 0.94620 1.02901 1.03068 1.21614 0.95024 0.77240 1.04251 1.48272 1.57810 1.12389 0.99932 1.76675 1.16803 1.04487 1.07657 1.25088 0.97570 0.95262 0.92674 1.20384 1.13519 0.96537 0.94574 1.21196 0.89633 0.97793 0.90303 1.20743 1.09544 0.97270 0.94402 1.17732 0.81608 0.81400 0.84048 1.90763 1.33206 1.78123 1.37701 1.48156 1.33954 1.13069 1.36646 1.19419 0.95341 0.84315 0.88383 1.21435 1.18993 1.14732 1.01837 0.92249 1.24903 0.96973 0.97216 0.94774 1.69926 1.42278 1.30234 1.10574 0.86471 0.81974 0.79742 0.79410 1.19755 1.20975 1.20876 1.21489 0.84352 1.03717 0.92028 1.19833 0.88840 1.04838 0.95473 1.29084 0.94117 0.92896 0.93999 1.81192 1.11179 1.09409 1.10431 1.21195 0.87557 0.86581 0.95464 1.21071 1.04588 1.03717 0.88516 1.66526 1.22534 1.35106 0.98258 1.19028 0.94598 0.89307 0.88027 0.90582 0.91906 0.91941 0.88986 0.88621 0.78120 0.83257 0.94476 0.93142 0.92655 0.88676 0.90385 0.87744 0.86296 0.89830 0.90227 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.14 1.25 7.12 -4.04 -0.03 1.23 16 3 N -0.39 -4.82 3.63 -60.39 -0.22 -5.04 16 4 N -0.24 -2.97 12.39 31.87 0.39 -2.58 16 5 C 0.09 1.01 12.30 -15.15 -0.19 0.82 16 6 C -0.24 -3.09 6.36 -105.20 -0.67 -3.76 16 7 C 0.04 0.51 7.67 -38.58 -0.30 0.22 16 8 C -0.21 -3.13 4.90 -104.83 -0.51 -3.64 16 9 C 0.57 10.09 6.52 -12.40 -0.08 10.01 16 10 O -0.52 -11.32 14.71 5.30 0.08 -11.24 16 11 N -0.59 -10.21 2.46 -176.24 -0.43 -10.64 16 12 C 0.24 5.44 5.23 -5.20 -0.03 5.41 16 13 C -0.53 -13.46 9.39 -34.44 -0.32 -13.78 16 14 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -24.55 13.29 55.43 0.74 -23.81 16 17 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.11 1.46 5.21 -4.04 -0.02 1.44 16 22 C -0.05 -0.53 6.02 -29.52 -0.18 -0.71 16 23 C 0.22 2.76 15.43 -20.77 -0.32 2.44 16 24 N -0.44 -6.76 18.54 42.15 0.78 -5.98 16 25 C 0.24 3.39 6.82 -82.14 -0.56 2.83 16 26 C -0.12 -1.48 9.65 36.01 0.35 -1.14 16 27 N -0.51 -7.14 10.27 -8.27 -0.08 -7.22 16 28 C 0.33 4.54 7.96 -156.08 -1.24 3.30 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.20 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.15 1.74 7.63 -52.49 -0.40 1.34 16 36 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.05 1.29 7.35 -51.93 -0.38 0.91 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 40 H 0.08 0.93 4.45 -51.93 -0.23 0.70 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.11 1.51 5.89 -51.93 -0.31 1.20 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -32.89 391.36 -7.62 -40.51 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.93 Total: -0.60 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -3.82 Total: 5.25 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 1.18 Total: -55.28 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.89 -7.62 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281845089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.132 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds