Wall clock time and date at job start Wed Apr 1 2020 00:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46938 * 2 1 4 4 N 1.39802 * 125.34341 * 270.26603 * 3 2 1 5 5 C 1.30194 * 110.13372 * 180.17641 * 4 3 2 6 6 C 1.45973 * 107.58860 * 359.60915 * 5 4 3 7 7 C 1.39654 * 134.12401 * 180.27011 * 6 5 4 8 8 C 1.39511 * 117.94967 * 179.97438 * 7 6 5 9 9 C 1.47691 * 120.40763 * 180.02562 * 8 7 6 10 10 O 1.21574 * 119.99577 * 235.17480 * 9 8 7 11 11 N 1.34771 * 120.00289 * 55.17747 * 9 8 7 12 12 C 1.46496 * 120.00295 * 185.58025 * 11 9 8 13 13 C 1.50699 * 109.47352 * 89.99439 * 12 11 9 14 14 H 1.08001 * 119.99791 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99973 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00014 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99996 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47312 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47176 * 119.99899 * 17 15 13 20 20 H 1.48499 * 109.47444 * 239.99659 * 17 15 13 21 21 C 1.46497 * 119.99799 * 5.57313 * 11 9 8 22 22 C 1.53004 * 109.47102 * 94.96933 * 21 11 9 23 23 C 1.47195 * 109.47230 * 180.02562 * 22 21 11 24 24 N 7.76226 * 66.08867 * 16.24098 * 2 1 3 25 25 C 1.40184 * 119.18245 * 359.97438 * 8 7 6 26 26 C 1.50702 * 119.31380 * 180.02562 * 25 8 7 27 27 N 1.31186 * 121.37435 * 359.97438 * 25 8 7 28 28 C 1.32936 * 121.84163 * 0.03624 * 27 25 8 29 29 H 1.08994 * 109.46595 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47178 * 299.99806 * 1 2 3 31 31 H 1.09001 * 109.47559 * 59.99907 * 1 2 3 32 32 H 1.09000 * 109.46869 * 240.00600 * 2 1 3 33 33 H 1.08993 * 109.47324 * 119.99824 * 2 1 3 34 34 H 1.08008 * 126.20799 * 179.87958 * 5 4 3 35 35 H 1.07996 * 121.02686 * 359.97438 * 7 6 5 36 36 H 1.08997 * 109.47321 * 209.99835 * 12 11 9 37 37 H 1.09004 * 109.46637 * 329.99957 * 12 11 9 38 38 H 0.97006 * 119.99810 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.47276 * 214.96223 * 21 11 9 40 40 H 1.09000 * 109.47462 * 334.97081 * 21 11 9 41 41 H 1.09003 * 109.46475 * 299.99780 * 22 21 11 42 42 H 1.08994 * 109.47506 * 59.99641 * 22 21 11 43 43 H 1.09001 * 109.46663 * 84.89889 * 26 25 8 44 44 H 1.08997 * 109.47298 * 204.89958 * 26 25 8 45 45 H 1.09003 * 109.47076 * 324.90627 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2829 2.1455 -1.1403 5 6 2.7066 3.3282 -0.7988 6 6 2.7269 3.3853 0.6597 7 6 3.0738 4.3679 1.5895 8 6 2.9626 4.0544 2.9444 9 6 3.3146 5.0530 3.9740 10 8 4.1348 4.7810 4.8292 11 7 2.7265 6.2656 3.9657 12 6 3.1624 7.2976 4.9096 13 6 4.2702 8.1097 4.2898 14 1 4.6148 7.8803 3.2923 15 6 4.8438 9.1455 4.9962 16 7 4.4244 9.4246 6.2111 17 14 6.2165 10.1527 4.2276 18 1 6.5022 9.6404 2.8633 19 1 5.8001 11.5757 4.1454 20 1 7.4391 10.0423 5.0633 21 6 1.6514 6.5517 3.0126 22 6 0.2977 6.3034 3.6811 23 6 -0.7826 6.5903 2.7233 24 7 -1.6162 6.8129 1.9846 25 6 2.5116 2.7803 3.3163 26 6 2.3898 2.4386 4.7791 27 7 2.1925 1.8794 2.4177 28 6 2.2805 2.1269 1.1145 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.9877 4.1244 -1.4724 35 1 3.4176 5.3404 1.2696 36 1 2.3226 7.9505 5.1475 37 1 3.5252 6.8251 5.8225 38 1 4.8278 10.1536 6.7079 39 1 1.7144 7.5926 2.6955 40 1 1.7526 5.9005 2.1444 41 1 0.2346 5.2624 3.9982 42 1 0.1963 6.9545 4.5493 43 1 1.4250 2.7813 5.1530 44 1 2.4668 1.3590 4.9077 45 1 3.1895 2.9287 5.3345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281845089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:19 Heat of formation + Delta-G solvation = 77.069938 kcal Electronic energy + Delta-G solvation = -29578.225108 eV Core-core repulsion = 25596.947518 eV Total energy + Delta-G solvation = -3981.277590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.72987 -41.00043 -38.99821 -38.02100 -36.73986 -35.66569 -34.84731 -33.47302 -32.87274 -32.16886 -30.47271 -29.33795 -28.36515 -25.89067 -25.37011 -24.70565 -23.91739 -23.17130 -21.64485 -20.52632 -19.09561 -18.59417 -18.38932 -18.13802 -17.55433 -16.99302 -16.76028 -16.61167 -16.13390 -15.72057 -15.52997 -15.34266 -15.11108 -14.83469 -14.77547 -14.46133 -14.26922 -14.24419 -13.80481 -13.68271 -13.58816 -13.50745 -13.21938 -13.08056 -13.01649 -12.92703 -12.73249 -12.67898 -12.50434 -12.37416 -12.14060 -12.03611 -11.97818 -11.59374 -11.44090 -10.96164 -10.53636 -10.43147 -9.95107 -9.53328 -9.28753 -8.13068 -6.24459 -0.34114 -0.11715 1.08470 1.39119 1.44113 1.47457 1.56757 1.61192 1.79692 1.84318 2.22385 2.47530 2.58704 2.97131 3.09689 3.19853 3.22166 3.53333 3.59816 3.69959 3.93875 4.03402 4.08991 4.09964 4.20659 4.31435 4.33680 4.42572 4.49417 4.69577 4.74374 4.77639 4.80284 4.81427 4.91776 5.00419 5.07348 5.14777 5.16764 5.27139 5.39594 5.45868 5.64130 5.78326 5.90485 6.17240 6.35981 6.55442 6.67414 6.80855 6.85288 7.32242 7.49015 8.93870 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012443 B = 0.003327 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.681988 B = 8414.259901 C = 8830.389226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 N -0.396 5.396 4 N -0.260 5.260 5 C 0.105 3.895 6 C -0.250 4.250 7 C 0.049 3.951 8 C -0.226 4.226 9 C 0.571 3.429 10 O -0.568 6.568 11 N -0.585 5.585 12 C 0.259 3.741 13 C -0.538 4.538 14 H 0.058 0.942 15 C 0.014 3.986 16 N -0.924 5.924 17 Si 0.954 3.046 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.288 1.288 21 C 0.110 3.890 22 C -0.039 4.039 23 C 0.243 3.757 24 N -0.485 5.485 25 C 0.239 3.761 26 C -0.118 4.118 27 N -0.514 5.514 28 C 0.314 3.686 29 H 0.101 0.899 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.240 0.760 35 H 0.165 0.835 36 H 0.039 0.961 37 H 0.012 0.988 38 H 0.264 0.736 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 -15.460 -11.361 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.011 3.989 3 N -0.187 5.187 4 N -0.071 5.071 5 C -0.094 4.094 6 C -0.260 4.260 7 C 0.021 3.979 8 C -0.233 4.233 9 C 0.359 3.641 10 O -0.448 6.448 11 N -0.315 5.315 12 C 0.139 3.861 13 C -0.577 4.577 14 H 0.077 0.923 15 C -0.186 4.186 16 N -0.565 5.565 17 Si 0.780 3.220 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.214 1.214 21 C -0.015 4.015 22 C -0.080 4.080 23 C -0.074 4.074 24 N -0.163 5.163 25 C 0.089 3.911 26 C -0.175 4.175 27 N -0.230 5.230 28 C 0.074 3.926 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.127 0.873 33 H 0.117 0.883 34 H 0.256 0.744 35 H 0.182 0.818 36 H 0.057 0.943 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.120 0.880 44 H 0.111 0.889 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.974 -16.965 -12.687 23.006 hybrid contribution 1.617 1.981 0.714 2.655 sum -7.357 -14.983 -11.973 20.542 Atomic orbital electron populations 1.22119 0.93837 1.04185 1.01730 1.21895 0.95639 0.76059 1.05268 1.48621 1.57386 1.13197 0.99472 1.76684 1.17514 1.05091 1.07784 1.25728 0.95979 0.95600 0.92073 1.20587 1.13576 0.96114 0.95685 1.21312 0.88517 0.98486 0.89585 1.20402 1.11928 0.96858 0.94153 1.18091 0.80539 0.81606 0.83877 1.90741 1.35269 1.79035 1.39760 1.47971 1.34835 1.12123 1.36531 1.18910 0.94646 0.84688 0.87896 1.21788 1.19479 1.14694 1.01747 0.92330 1.25666 0.99156 0.98532 0.95221 1.70027 1.43654 1.30978 1.11794 0.85557 0.79052 0.78597 0.78751 1.18898 1.20227 1.21406 1.21639 0.83996 1.04113 0.91765 1.19798 0.86932 1.06290 0.94979 1.29140 0.93530 0.91566 0.93160 1.81226 1.12484 1.10932 1.11669 1.21358 0.87291 0.86285 0.96133 1.21043 1.04654 1.04357 0.87463 1.66562 1.23024 1.34913 0.98539 1.19361 0.94668 0.90221 0.88318 0.88029 0.93642 0.92686 0.87281 0.88300 0.74377 0.81774 0.94286 0.96938 0.92658 0.88799 0.88641 0.85797 0.85428 0.87998 0.88921 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 10.24 71.98 0.74 -1.54 16 2 C 0.13 2.11 7.12 86.38 0.62 2.73 16 3 N -0.40 -8.98 3.63 -344.97 -1.25 -10.24 16 4 N -0.26 -5.68 12.39 -53.08 -0.66 -6.34 16 5 C 0.10 1.96 12.30 86.94 1.07 3.02 16 6 C -0.25 -5.88 6.36 -20.24 -0.13 -6.01 16 7 C 0.05 1.19 7.67 22.92 0.18 1.37 16 8 C -0.23 -6.47 4.90 -20.00 -0.10 -6.57 16 9 C 0.57 20.42 6.52 86.74 0.57 20.98 16 10 O -0.57 -25.51 14.71 -3.95 -0.06 -25.57 16 11 N -0.59 -20.17 2.46 -829.76 -2.04 -22.20 16 12 C 0.26 11.75 5.23 85.63 0.45 12.20 16 13 C -0.54 -27.39 9.39 25.60 0.24 -27.15 16 14 H 0.06 2.92 7.81 -2.91 -0.02 2.90 16 15 C 0.01 0.72 5.46 84.65 0.46 1.18 16 16 N -0.92 -51.63 13.29 21.45 0.28 -51.35 16 17 Si 0.95 41.90 29.54 68.60 2.03 43.93 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 21 C 0.11 2.73 5.21 86.38 0.45 3.18 16 22 C -0.04 -0.78 6.02 28.79 0.17 -0.61 16 23 C 0.24 5.75 15.43 89.44 1.38 7.13 16 24 N -0.49 -14.11 18.54 20.00 0.37 -13.74 16 25 C 0.24 6.51 6.82 43.13 0.29 6.80 16 26 C -0.12 -2.83 9.65 71.24 0.69 -2.14 16 27 N -0.51 -13.81 10.27 -180.08 -1.85 -15.66 16 28 C 0.31 8.14 7.96 134.17 1.07 9.21 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.24 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.16 3.42 7.63 -2.91 -0.02 3.40 16 36 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 37 H 0.01 0.66 7.35 -2.39 -0.02 0.65 16 38 H 0.26 14.04 8.31 -92.70 -0.77 13.27 16 39 H 0.09 2.40 8.11 -2.39 -0.02 2.38 16 40 H 0.10 2.07 4.45 -2.39 -0.01 2.06 16 41 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.08 2.43 5.89 -2.39 -0.01 2.42 16 Total: -1.00 -72.11 391.36 5.99 -66.12 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.03 Total: 11.27 kcal Atomic # 6 Polarization: 15.63 SS G_CDS: 8.14 Total: 23.77 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -5.14 Total: -119.52 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.06 Total: -25.57 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -72.11 5.99 -66.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281845089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.193 kcal (2) G-P(sol) polarization free energy of solvation -72.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds