Wall clock time and date at job start Wed Apr 1 2020 00:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.50700 * 109.47412 * 164.99847 * 18 17 14 20 20 C 1.38285 * 119.92307 * 269.72736 * 19 18 17 21 21 C 1.38106 * 120.07040 * 179.72598 * 20 19 18 22 22 C 1.38911 * 119.92641 * 0.54144 * 21 20 19 23 23 N 1.39676 * 120.07710 * 179.70329 * 22 21 20 24 24 C 1.46504 * 120.00185 * 180.02562 * 23 22 21 25 25 C 1.46502 * 119.99956 * 0.02980 * 23 22 21 26 26 C 1.38910 * 119.84963 * 359.73473 * 22 21 20 27 27 C 1.38100 * 119.92462 * 359.97438 * 26 22 21 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 0.97000 * 120.00897 * 245.00185 * 17 14 12 36 36 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 37 37 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 38 38 H 1.07999 * 119.96360 * 359.97438 * 20 19 18 39 39 H 1.08006 * 120.03571 * 180.27246 * 21 20 19 40 40 H 1.08996 * 109.46758 * 60.00410 * 24 23 22 41 41 H 1.09000 * 109.46850 * 180.02562 * 24 23 22 42 42 H 1.08997 * 109.46589 * 300.00089 * 24 23 22 43 43 H 1.08994 * 109.47203 * 89.99212 * 25 23 22 44 44 H 1.08992 * 109.47260 * 209.99890 * 25 23 22 45 45 H 1.09004 * 109.46774 * 329.99857 * 25 23 22 46 46 H 1.08003 * 120.03696 * 180.02562 * 26 22 21 47 47 H 1.08008 * 119.96364 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6167 0.7951 5.4204 20 6 1.3446 0.9108 6.5904 21 6 0.8606 1.6754 7.6338 22 6 -0.3641 2.3193 7.5111 23 7 -0.8595 3.0883 8.5666 24 6 -2.1516 3.7663 8.4357 25 6 -0.0869 3.2170 9.8047 26 6 -1.0954 2.1962 6.3365 27 6 -0.6027 1.4350 5.2948 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.9052 1.7752 3.4681 36 1 0.3187 -0.4565 3.7178 37 1 1.7669 -0.8422 4.6782 38 1 2.2945 0.4061 6.6869 39 1 1.4317 1.7690 8.5457 40 1 -2.9332 3.0274 8.2587 41 1 -2.3693 4.3135 9.3529 42 1 -2.1132 4.4625 7.5980 43 1 0.5781 4.0774 9.7303 44 1 -0.7673 3.3553 10.6449 45 1 0.5034 2.3139 9.9601 46 1 -2.0477 2.6959 6.2377 47 1 -1.1710 1.3385 4.3814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282424791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:52 Heat of formation + Delta-G solvation = -36.373561 kcal Electronic energy + Delta-G solvation = -27982.152242 eV Core-core repulsion = 24099.106573 eV Total energy + Delta-G solvation = -3883.045669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.84540 -37.05268 -36.54564 -36.10431 -35.14224 -34.48460 -32.53571 -31.27148 -30.25577 -29.04980 -28.45968 -26.25000 -25.52959 -25.08678 -23.58886 -22.46908 -20.78327 -20.54731 -18.72427 -17.68171 -17.19664 -16.78311 -16.43383 -16.08199 -15.71954 -15.36630 -15.15624 -14.84072 -14.35917 -14.24478 -13.94611 -13.65386 -13.41040 -13.20477 -13.01667 -12.91976 -12.67188 -12.63054 -12.49113 -12.27248 -11.97965 -11.89362 -11.67394 -11.41708 -11.30359 -11.19214 -11.01649 -10.93270 -10.92716 -10.77313 -10.42634 -10.22580 -9.98339 -9.92702 -9.26230 -9.16098 -8.99177 -8.41642 -7.92774 -7.47185 -6.03691 -4.09788 1.17694 1.37487 1.55663 2.84179 3.31872 3.38161 3.41085 3.55220 3.86600 4.23835 4.43801 4.61390 4.65738 4.79408 4.87723 4.89263 4.99416 5.10784 5.22758 5.27780 5.30257 5.32287 5.34023 5.39076 5.47930 5.61765 5.67421 5.73526 5.96946 6.08089 6.14998 6.18711 6.32815 6.42219 6.66411 6.68803 6.73055 6.81776 6.84030 6.98315 7.06675 7.26158 7.26893 7.55187 7.68574 7.83807 8.08669 8.32218 8.92584 9.55756 11.02026 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021461 B = 0.002560 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.387602 B =10933.397429 C =11618.946861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.779 3.221 15 O -0.998 6.998 16 O -0.976 6.976 17 N -1.129 6.129 18 C 0.169 3.831 19 C -0.150 4.150 20 C -0.054 4.054 21 C -0.200 4.200 22 C 0.213 3.787 23 N -0.641 5.641 24 C 0.097 3.903 25 C 0.094 3.906 26 C -0.196 4.196 27 C -0.053 4.053 28 H 0.092 0.908 29 H 0.033 0.967 30 H 0.011 0.989 31 H 0.262 0.738 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.412 0.588 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.120 0.880 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.179 3.088 23.149 24.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.833 5.833 13 C -0.038 4.038 14 S 2.788 3.212 15 O -0.981 6.981 16 O -0.960 6.960 17 N -0.888 5.888 18 C 0.043 3.957 19 C -0.153 4.153 20 C -0.074 4.074 21 C -0.222 4.222 22 C 0.112 3.888 23 N -0.353 5.353 24 C -0.047 4.047 25 C -0.050 4.050 26 C -0.219 4.219 27 C -0.073 4.073 28 H 0.111 0.889 29 H 0.052 0.948 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.245 0.755 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.138 0.862 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.357 3.142 23.141 24.203 hybrid contribution -0.252 0.052 -0.809 0.849 sum -6.609 3.194 22.332 23.507 Atomic orbital electron populations 1.22112 0.98318 0.99654 1.00614 1.18716 0.91248 0.93008 0.80506 0.92352 1.21347 1.31413 1.12946 0.90070 0.91968 1.24912 0.95003 0.95047 0.98993 1.69863 1.36624 1.22798 1.23698 0.86501 0.78640 0.79962 0.82316 1.20593 1.19898 1.21233 1.57687 1.70028 1.19758 1.35839 1.21159 1.01694 0.82219 0.98696 1.01929 0.73670 0.73147 0.72424 1.93527 1.69194 1.60842 1.74555 1.93611 1.74423 1.55991 1.71941 1.56289 1.62427 1.17453 1.52644 1.19987 0.94711 0.91905 0.89123 1.19624 0.96363 1.03524 0.95831 1.20871 0.98535 0.95961 0.91984 1.20649 0.96721 1.04161 1.00686 1.17854 0.92688 0.90559 0.87683 1.46318 1.21319 1.53531 1.14156 1.21586 0.84416 0.96591 1.02062 1.21647 0.96118 1.01672 0.85519 1.20620 1.01650 1.06060 0.93526 1.20894 0.94679 0.93961 0.97722 0.88947 0.94801 0.96997 0.92761 0.93317 0.93366 0.91003 0.75477 0.91277 0.90295 0.85819 0.86099 0.92805 0.91060 0.92745 0.93485 0.91703 0.91284 0.86159 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.95 37.16 0.33 -2.99 16 2 C 0.27 6.58 2.62 -69.09 -0.18 6.40 16 3 H 0.06 1.59 6.91 -51.92 -0.36 1.24 16 4 C -0.52 -14.05 8.37 -34.44 -0.29 -14.34 16 5 H 0.06 1.68 7.65 -52.49 -0.40 1.28 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.99 -20.55 3.12 -115.86 -0.36 -20.92 16 13 C 0.11 1.93 9.53 59.85 0.57 2.50 16 14 S 2.78 55.06 6.09 -107.50 -0.66 54.40 16 15 O -1.00 -20.84 16.68 -57.17 -0.95 -21.80 16 16 O -0.98 -23.16 16.70 -57.17 -0.95 -24.11 16 17 N -1.13 -17.23 6.05 -11.65 -0.07 -17.30 16 18 C 0.17 2.19 6.37 -5.19 -0.03 2.15 16 19 C -0.15 -1.79 5.28 -104.59 -0.55 -2.34 16 20 C -0.05 -0.61 9.69 -39.61 -0.38 -0.99 16 21 C -0.20 -2.07 9.21 -39.38 -0.36 -2.43 16 22 C 0.21 2.22 6.55 -83.79 -0.55 1.67 16 23 N -0.64 -5.33 3.41 -187.55 -0.64 -5.97 16 24 C 0.10 0.59 9.40 59.85 0.56 1.16 16 25 C 0.09 0.56 10.16 59.85 0.61 1.17 16 26 C -0.20 -2.07 9.31 -39.38 -0.37 -2.43 16 27 C -0.05 -0.60 9.69 -39.61 -0.38 -0.98 16 28 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 29 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.71 7.79 -51.93 -0.40 0.30 16 34 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 35 H 0.41 5.84 8.64 -34.47 -0.30 5.55 16 36 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 37 H 0.08 1.00 7.69 -51.93 -0.40 0.60 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.03 6.14 -52.48 -0.32 0.71 16 40 H 0.05 0.32 7.95 -51.93 -0.41 -0.09 16 41 H 0.07 0.30 7.79 -51.93 -0.40 -0.10 16 42 H 0.05 0.34 7.95 -51.93 -0.41 -0.07 16 43 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.06 0.28 7.92 -51.93 -0.41 -0.13 16 45 H 0.07 0.40 6.20 -51.93 -0.32 0.07 16 46 H 0.12 1.08 6.73 -52.48 -0.35 0.73 16 47 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -33.55 390.12 -10.44 -43.99 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.16 Total: 3.69 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.12 Total: -9.84 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -0.44 Total: -68.51 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -1.91 Total: -45.91 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 55.06 SS G_CDS: -0.66 Total: 54.40 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.55 -10.44 -43.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282424791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.614 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds