Wall clock time and date at job start Wed Apr 1 2020 00:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.50700 * 109.47412 * 164.99847 * 18 17 14 20 20 C 1.38285 * 119.92307 * 269.72736 * 19 18 17 21 21 C 1.38106 * 120.07040 * 179.72598 * 20 19 18 22 22 C 1.38911 * 119.92641 * 0.54144 * 21 20 19 23 23 N 1.39676 * 120.07710 * 179.70329 * 22 21 20 24 24 C 1.46504 * 120.00185 * 180.02562 * 23 22 21 25 25 C 1.46502 * 119.99956 * 0.02980 * 23 22 21 26 26 C 1.38910 * 119.84963 * 359.73473 * 22 21 20 27 27 C 1.38100 * 119.92462 * 359.97438 * 26 22 21 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 0.97000 * 120.00897 * 245.00185 * 17 14 12 36 36 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 37 37 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 38 38 H 1.07999 * 119.96360 * 359.97438 * 20 19 18 39 39 H 1.08006 * 120.03571 * 180.27246 * 21 20 19 40 40 H 1.08996 * 109.46758 * 60.00410 * 24 23 22 41 41 H 1.09000 * 109.46850 * 180.02562 * 24 23 22 42 42 H 1.08997 * 109.46589 * 300.00089 * 24 23 22 43 43 H 1.08994 * 109.47203 * 89.99212 * 25 23 22 44 44 H 1.08992 * 109.47260 * 209.99890 * 25 23 22 45 45 H 1.09004 * 109.46774 * 329.99857 * 25 23 22 46 46 H 1.08003 * 120.03696 * 180.02562 * 26 22 21 47 47 H 1.08008 * 119.96364 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6167 0.7951 5.4204 20 6 1.3446 0.9108 6.5904 21 6 0.8606 1.6754 7.6338 22 6 -0.3641 2.3193 7.5111 23 7 -0.8595 3.0883 8.5666 24 6 -2.1516 3.7663 8.4357 25 6 -0.0869 3.2170 9.8047 26 6 -1.0954 2.1962 6.3365 27 6 -0.6027 1.4350 5.2948 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.9052 1.7752 3.4681 36 1 0.3187 -0.4565 3.7178 37 1 1.7669 -0.8422 4.6782 38 1 2.2945 0.4061 6.6869 39 1 1.4317 1.7690 8.5457 40 1 -2.9332 3.0274 8.2587 41 1 -2.3693 4.3135 9.3529 42 1 -2.1132 4.4625 7.5980 43 1 0.5781 4.0774 9.7303 44 1 -0.7673 3.3553 10.6449 45 1 0.5034 2.3139 9.9601 46 1 -2.0477 2.6959 6.2377 47 1 -1.1710 1.3385 4.3814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282424791.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:51 Heat of formation + Delta-G solvation = -59.247980 kcal Electronic energy + Delta-G solvation = -27983.144152 eV Core-core repulsion = 24099.106573 eV Total energy + Delta-G solvation = -3884.037578 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.60945 -38.31280 -37.90578 -37.69956 -36.84468 -35.52622 -34.49818 -32.03044 -31.13450 -30.87639 -28.97342 -27.26104 -27.14317 -26.88949 -24.36996 -23.24693 -22.56996 -21.36934 -20.25023 -18.83668 -18.55213 -18.43320 -17.98804 -17.26607 -16.77343 -16.76202 -16.09623 -15.90817 -15.66069 -15.15315 -15.10298 -14.79543 -14.78502 -14.54250 -14.37916 -13.81326 -13.72522 -13.58858 -13.44668 -13.35603 -13.17424 -13.13623 -13.07912 -12.96190 -12.93340 -12.79027 -12.76891 -12.56330 -12.23856 -12.13873 -12.04606 -11.84542 -11.67206 -11.11690 -10.66560 -10.49957 -10.41922 -9.80432 -9.63460 -8.17755 -8.09617 -6.22889 -0.30584 0.57116 0.63060 1.43026 1.45211 1.54170 2.12431 2.27112 2.45036 2.67899 3.00514 3.18469 3.49396 3.88229 3.94430 4.11027 4.11488 4.22203 4.30271 4.48858 4.52178 4.55696 4.58917 4.72047 4.76227 4.82681 4.86820 4.89300 4.91543 4.92048 4.96045 5.04863 5.09645 5.19622 5.20632 5.23275 5.39056 5.49521 5.64295 5.75077 5.83070 5.91335 5.95359 6.08929 6.23562 6.33750 6.37749 6.55748 6.84862 7.45784 8.94329 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021461 B = 0.002560 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.387602 B =10933.397429 C =11618.946861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.537 4.537 5 H 0.056 0.944 6 C 0.016 3.984 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.283 1.283 10 H -0.267 1.267 11 H -0.279 1.279 12 N -0.996 5.996 13 C 0.102 3.898 14 S 2.796 3.204 15 O -1.009 7.009 16 O -1.020 7.020 17 N -1.115 6.115 18 C 0.165 3.835 19 C -0.164 4.164 20 C -0.061 4.061 21 C -0.207 4.207 22 C 0.209 3.791 23 N -0.645 5.645 24 C 0.091 3.909 25 C 0.088 3.912 26 C -0.206 4.206 27 C -0.059 4.059 28 H 0.065 0.935 29 H 0.044 0.956 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.419 0.581 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.056 0.944 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.085 0.915 45 H 0.070 0.930 46 H 0.133 0.867 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.225 2.712 24.877 26.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.041 0.959 4 C -0.577 4.577 5 H 0.074 0.926 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.781 3.219 9 H -0.210 1.210 10 H -0.191 1.191 11 H -0.204 1.204 12 N -0.838 5.838 13 C -0.044 4.044 14 S 2.806 3.194 15 O -0.992 6.992 16 O -1.005 7.005 17 N -0.877 5.877 18 C 0.040 3.960 19 C -0.168 4.168 20 C -0.081 4.081 21 C -0.230 4.230 22 C 0.106 3.894 23 N -0.356 5.356 24 C -0.051 4.051 25 C -0.055 4.055 26 C -0.228 4.228 27 C -0.078 4.078 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.253 0.747 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.103 0.897 45 H 0.089 0.911 46 H 0.150 0.850 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.410 2.760 24.896 26.121 hybrid contribution 0.039 0.227 -1.169 1.192 sum -7.371 2.987 23.727 25.024 Atomic orbital electron populations 1.21902 0.96684 1.00294 1.00517 1.18395 0.92359 0.91267 0.81145 0.95862 1.21666 1.31491 1.12968 0.91530 0.92610 1.25638 0.95271 0.95768 1.01645 1.69979 1.37322 1.23743 1.24279 0.85612 0.77906 0.79198 0.79234 1.20957 1.19112 1.20382 1.57556 1.69975 1.21034 1.35231 1.21375 1.01735 0.80347 1.00919 1.01213 0.73633 0.72293 0.72310 1.93505 1.69884 1.61269 1.74569 1.93545 1.76007 1.57491 1.73424 1.55913 1.62150 1.17958 1.51697 1.20192 0.94707 0.91844 0.89262 1.19524 0.96988 1.04590 0.95713 1.21017 0.98760 0.96168 0.92124 1.20847 0.97031 1.03969 1.01116 1.18062 0.92672 0.90456 0.88243 1.46608 1.22007 1.52774 1.14188 1.21736 0.83566 0.96664 1.03174 1.21813 0.96594 1.01861 0.85223 1.20797 1.02298 1.06170 0.93544 1.21011 0.94603 0.93974 0.98213 0.91619 0.93687 0.94431 0.92685 0.94163 0.90076 0.90223 0.74681 0.90161 0.89901 0.85338 0.84545 0.92561 0.88903 0.92997 0.93244 0.89676 0.91118 0.84951 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.95 71.98 0.64 -5.34 16 2 C 0.27 13.50 2.62 44.24 0.12 13.62 16 3 H 0.02 1.32 6.91 -2.38 -0.02 1.31 16 4 C -0.54 -29.40 8.37 25.60 0.21 -29.18 16 5 H 0.06 3.04 7.65 -2.91 -0.02 3.02 16 6 C 0.02 0.91 5.30 84.66 0.45 1.35 16 7 N -0.91 -51.77 11.32 21.45 0.24 -51.53 16 8 Si 0.95 43.79 29.54 68.60 2.03 45.81 16 9 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 N -1.00 -41.00 3.12 -520.46 -1.62 -42.63 16 13 C 0.10 3.48 9.53 127.77 1.22 4.69 16 14 S 2.80 110.59 6.09 -56.49 -0.34 110.24 16 15 O -1.01 -41.49 16.68 -128.00 -2.14 -43.62 16 16 O -1.02 -49.64 16.70 -128.00 -2.14 -51.78 16 17 N -1.11 -33.18 6.05 -190.78 -1.15 -34.34 16 18 C 0.16 4.03 6.37 85.63 0.55 4.57 16 19 C -0.16 -3.70 5.28 -19.84 -0.10 -3.81 16 20 C -0.06 -1.30 9.69 22.25 0.22 -1.08 16 21 C -0.21 -3.97 9.21 22.40 0.21 -3.76 16 22 C 0.21 3.98 6.55 38.21 0.25 4.23 16 23 N -0.64 -9.32 3.41 -747.29 -2.55 -11.87 16 24 C 0.09 0.92 9.40 127.77 1.20 2.12 16 25 C 0.09 0.84 10.16 127.77 1.30 2.14 16 26 C -0.21 -4.03 9.31 22.40 0.21 -3.82 16 27 C -0.06 -1.24 9.69 22.25 0.22 -1.03 16 28 H 0.07 3.31 6.07 -2.39 -0.01 3.29 16 29 H 0.04 1.85 6.66 -2.39 -0.02 1.84 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 2.21 7.79 -2.38 -0.02 2.19 16 34 H 0.08 2.58 6.43 -2.39 -0.02 2.56 16 35 H 0.42 11.68 8.64 -96.74 -0.84 10.84 16 36 H 0.08 1.79 8.08 -2.38 -0.02 1.77 16 37 H 0.08 1.96 7.69 -2.38 -0.02 1.94 16 38 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.14 2.08 6.14 -2.91 -0.02 2.06 16 40 H 0.06 0.55 7.95 -2.39 -0.02 0.53 16 41 H 0.09 0.52 7.79 -2.39 -0.02 0.51 16 42 H 0.05 0.56 7.95 -2.39 -0.02 0.54 16 43 H 0.05 0.46 8.14 -2.39 -0.02 0.45 16 44 H 0.08 0.48 7.92 -2.39 -0.02 0.46 16 45 H 0.07 0.66 6.20 -2.38 -0.01 0.64 16 46 H 0.13 2.17 6.73 -2.91 -0.02 2.15 16 47 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -71.90 390.12 -0.86 -72.76 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.14 Total: 22.25 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 6.68 Total: -15.30 kcal Atomic # 7 Polarization: -135.28 SS G_CDS: -5.08 Total: -140.36 kcal Atomic # 8 Polarization: -91.13 SS G_CDS: -4.27 Total: -95.40 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 110.59 SS G_CDS: -0.34 Total: 110.24 kcal Total: -71.90 -0.86 -72.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282424791.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.511 kcal (2) G-P(sol) polarization free energy of solvation -71.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds