Wall clock time and date at job start Wed Apr 1 2020 00:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37886 * 119.99877 * 294.36601 * 4 2 1 7 7 N 1.31510 * 119.99961 * 156.89610 * 6 4 2 8 8 Si 1.86796 * 119.99750 * 337.17309 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.72455 * 8 6 4 10 10 H 1.48502 * 109.47231 * 299.72156 * 8 6 4 11 11 H 1.48498 * 109.47554 * 59.72235 * 8 6 4 12 12 N 1.46509 * 109.47062 * 240.00243 * 2 1 3 13 13 C 1.46502 * 119.99604 * 300.00516 * 12 2 1 14 14 S 1.65598 * 119.99835 * 119.99654 * 12 2 1 15 15 O 1.42102 * 106.40027 * 203.53979 * 14 12 2 16 16 O 1.42091 * 106.40355 * 336.46171 * 14 12 2 17 17 N 1.65598 * 107.21635 * 90.00560 * 14 12 2 18 18 C 1.46506 * 120.00181 * 64.99320 * 17 14 12 19 19 C 1.50702 * 109.46805 * 165.00281 * 18 17 14 20 20 C 1.38292 * 119.92302 * 269.72894 * 19 18 17 21 21 C 1.38108 * 120.07355 * 179.72912 * 20 19 18 22 22 C 1.38912 * 119.92141 * 0.54513 * 21 20 19 23 23 N 1.39668 * 120.07699 * 179.70355 * 22 21 20 24 24 C 1.46494 * 120.00466 * 180.02562 * 23 22 21 25 25 C 1.46508 * 119.99558 * 0.02583 * 23 22 21 26 26 C 1.38916 * 119.85356 * 359.72787 * 22 21 20 27 27 C 1.38106 * 119.92150 * 0.02562 * 26 22 21 28 28 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 29 29 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 30 30 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 31 31 H 0.97006 * 120.00339 * 355.20022 * 7 6 4 32 32 H 1.08992 * 109.47772 * 90.00121 * 13 12 2 33 33 H 1.09003 * 109.46297 * 209.99546 * 13 12 2 34 34 H 1.08994 * 109.47613 * 329.99192 * 13 12 2 35 35 H 0.96998 * 120.00072 * 245.00203 * 17 14 12 36 36 H 1.08997 * 109.47104 * 285.00272 * 18 17 14 37 37 H 1.09000 * 109.46515 * 45.00774 * 18 17 14 38 38 H 1.07999 * 119.96043 * 359.97438 * 20 19 18 39 39 H 1.07994 * 120.03849 * 180.27200 * 21 20 19 40 40 H 1.08995 * 109.47059 * 60.00726 * 24 23 22 41 41 H 1.09007 * 109.47288 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.47335 * 300.00420 * 24 23 22 43 43 H 1.08997 * 109.47517 * 89.99764 * 25 23 22 44 44 H 1.08999 * 109.47001 * 209.99718 * 25 23 22 45 45 H 1.08999 * 109.47134 * 329.99360 * 25 23 22 46 46 H 1.07994 * 120.04045 * 180.02562 * 26 22 21 47 47 H 1.08002 * 119.96028 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7977 -0.1757 2.4794 7 7 1.8081 -0.9531 3.5401 8 14 1.4573 1.6517 2.6639 9 1 1.2326 1.9711 4.0966 10 1 2.6208 2.4253 2.1609 11 1 0.2479 2.0116 1.8810 12 7 2.0183 -0.6906 -1.1963 13 6 1.6642 -2.0932 -1.4281 14 16 2.9703 0.1143 -2.2863 15 8 2.8226 -0.5645 -3.5260 16 8 2.6902 1.4973 -2.1193 17 7 4.5436 -0.1042 -1.8182 18 6 5.1356 -1.4441 -1.8417 19 6 6.6347 -1.3328 -1.7354 20 6 7.4020 -1.2310 -2.8814 21 6 8.7756 -1.1232 -2.7874 22 6 9.3873 -1.1286 -1.5402 23 7 10.7767 -1.0260 -1.4415 24 6 11.4202 -1.0325 -0.1255 25 6 11.5907 -0.9120 -2.6543 26 6 8.6140 -1.2368 -0.3912 27 6 7.2405 -1.3391 -0.4923 28 1 -0.3634 0.4065 0.9439 29 1 -0.3634 0.6142 -0.8239 30 1 -0.3634 -1.0206 -0.1200 31 1 1.9114 -1.9121 3.4376 32 1 0.7375 -2.1443 -1.9995 33 1 2.4627 -2.5818 -1.9866 34 1 1.5294 -2.5969 -0.4711 35 1 5.0733 0.6550 -1.5283 36 1 4.7539 -2.0248 -1.0020 37 1 4.8735 -1.9407 -2.7760 38 1 6.9261 -1.2317 -3.8509 39 1 9.3739 -1.0393 -3.6825 40 1 11.1881 -1.9655 0.3879 41 1 12.4997 -0.9438 -0.2483 42 1 11.0517 -0.1924 0.4633 43 1 11.7139 0.1399 -2.9117 44 1 12.5687 -1.3601 -2.4790 45 1 11.0951 -1.4312 -3.4747 46 1 9.0864 -1.2409 0.5800 47 1 6.6387 -1.4236 0.4005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282424795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:55 Heat of formation + Delta-G solvation = -37.688543 kcal Electronic energy + Delta-G solvation = -28277.873268 eV Core-core repulsion = 24394.770577 eV Total energy + Delta-G solvation = -3883.102691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.77109 -37.01456 -36.68405 -36.29454 -35.31087 -34.44492 -32.59143 -31.19230 -30.20227 -29.77093 -28.39749 -26.20805 -25.65085 -24.65300 -23.53216 -22.38792 -20.68912 -20.47393 -18.80799 -17.64854 -17.53210 -17.13994 -16.84621 -16.06577 -15.91463 -15.31490 -15.12726 -14.71461 -14.24086 -14.01865 -13.86317 -13.65695 -13.56629 -13.29998 -12.99075 -12.94421 -12.69209 -12.59070 -12.43009 -12.20972 -12.07985 -11.94964 -11.92131 -11.74360 -11.58705 -11.48388 -11.29158 -11.02768 -10.85348 -10.71378 -10.44026 -10.03692 -9.86931 -9.78782 -9.27571 -9.13749 -8.91127 -8.40502 -8.03891 -7.40667 -6.51685 -4.13789 1.13190 1.45639 1.58275 2.90460 3.40270 3.44559 3.46704 3.61458 3.88661 4.13899 4.46021 4.67103 4.72164 4.83307 4.94155 4.94664 5.02720 5.05779 5.14097 5.28789 5.36116 5.37344 5.40857 5.46674 5.49018 5.59726 5.74218 5.82011 6.06602 6.08912 6.09611 6.21200 6.23081 6.39261 6.43798 6.51423 6.61135 6.70852 6.76887 6.81059 7.01491 7.05089 7.28020 7.33572 7.35633 7.56844 7.98588 8.31709 8.84771 9.51224 10.83455 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.003344 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.117322 B = 8370.128145 C = 9694.025241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.247 3.753 3 H 0.047 0.953 4 C -0.615 4.615 5 H 0.066 0.934 6 C 0.043 3.957 7 N -0.894 5.894 8 Si 1.023 2.977 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.273 1.273 12 N -0.985 5.985 13 C 0.106 3.894 14 S 2.783 3.217 15 O -0.997 6.997 16 O -0.985 6.985 17 N -1.122 6.122 18 C 0.170 3.830 19 C -0.150 4.150 20 C -0.055 4.055 21 C -0.201 4.201 22 C 0.213 3.787 23 N -0.641 5.641 24 C 0.097 3.903 25 C 0.094 3.906 26 C -0.195 4.195 27 C -0.050 4.050 28 H 0.060 0.940 29 H 0.026 0.974 30 H 0.049 0.951 31 H 0.270 0.730 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.414 0.586 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.121 0.879 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.584 -2.485 -10.203 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.142 3.858 3 H 0.064 0.936 4 C -0.653 4.653 5 H 0.084 0.916 6 C -0.164 4.164 7 N -0.526 5.526 8 Si 0.851 3.149 9 H -0.209 1.209 10 H -0.205 1.205 11 H -0.199 1.199 12 N -0.827 5.827 13 C -0.040 4.040 14 S 2.791 3.209 15 O -0.980 6.980 16 O -0.970 6.970 17 N -0.881 5.881 18 C 0.044 3.956 19 C -0.153 4.153 20 C -0.075 4.075 21 C -0.223 4.223 22 C 0.112 3.888 23 N -0.354 5.354 24 C -0.047 4.047 25 C -0.049 4.049 26 C -0.218 4.218 27 C -0.070 4.070 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.247 0.753 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.139 0.861 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.090 -0.973 -9.892 18.913 hybrid contribution 0.775 -1.136 -0.528 1.473 sum 16.866 -2.109 -10.420 19.937 Atomic orbital electron populations 1.22391 0.98467 1.00430 1.00005 1.18940 0.91289 0.92801 0.82771 0.93572 1.22137 1.41149 1.11270 0.90749 0.91580 1.25582 0.93297 1.05507 0.92026 1.70862 1.43504 1.06375 1.31880 0.84339 0.77906 0.76325 0.76376 1.20879 1.20513 1.19931 1.57498 1.64758 1.21391 1.39062 1.21222 0.99077 0.81807 1.01937 1.01771 0.72698 0.73011 0.73377 1.93542 1.86089 1.76312 1.42044 1.93575 1.83829 1.32609 1.86942 1.56040 1.31726 1.15023 1.85360 1.19992 0.89848 0.83651 1.02112 1.19609 0.94717 1.07678 0.93311 1.20850 0.92777 0.95733 0.98100 1.20620 0.94941 1.11207 0.95572 1.17856 0.82816 0.94087 0.94055 1.46312 1.02852 1.80340 1.05886 1.21587 0.97414 1.01369 0.84299 1.21639 0.94873 1.00948 0.87446 1.20640 0.93835 1.10437 0.96852 1.20965 0.93797 0.94806 0.97393 0.92115 0.95469 0.93189 0.92035 0.93814 0.93007 0.90104 0.75324 0.90933 0.90482 0.85928 0.86161 0.92779 0.91088 0.92719 0.93537 0.91735 0.91315 0.86127 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.01 37.16 0.33 -3.02 16 2 C 0.25 5.74 2.22 -69.08 -0.15 5.58 16 3 H 0.05 1.13 5.49 -51.93 -0.29 0.85 16 4 C -0.61 -15.85 8.30 -34.44 -0.29 -16.14 16 5 H 0.07 1.78 7.38 -52.48 -0.39 1.40 16 6 C 0.04 1.18 5.20 -17.82 -0.09 1.08 16 7 N -0.89 -25.80 13.70 55.43 0.76 -25.04 16 8 Si 1.02 24.41 26.44 -169.99 -4.49 19.92 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.13 6.12 56.52 0.35 -5.79 16 12 N -0.99 -19.93 3.12 -115.86 -0.36 -20.29 16 13 C 0.11 1.86 9.15 59.85 0.55 2.41 16 14 S 2.78 53.70 6.09 -107.50 -0.66 53.05 16 15 O -1.00 -20.00 16.68 -57.17 -0.95 -20.95 16 16 O -0.99 -21.82 16.70 -57.17 -0.95 -22.78 16 17 N -1.12 -18.23 6.05 -11.65 -0.07 -18.30 16 18 C 0.17 2.45 6.37 -5.19 -0.03 2.41 16 19 C -0.15 -2.00 5.28 -104.59 -0.55 -2.55 16 20 C -0.06 -0.67 9.69 -39.61 -0.38 -1.05 16 21 C -0.20 -2.27 9.21 -39.38 -0.36 -2.63 16 22 C 0.21 2.46 6.55 -83.79 -0.55 1.91 16 23 N -0.64 -5.99 3.41 -187.55 -0.64 -6.63 16 24 C 0.10 0.70 9.40 59.84 0.56 1.26 16 25 C 0.09 0.64 10.16 59.85 0.61 1.24 16 26 C -0.20 -2.37 9.31 -39.38 -0.37 -2.74 16 27 C -0.05 -0.67 9.69 -39.61 -0.38 -1.05 16 28 H 0.06 1.36 5.44 -51.93 -0.28 1.08 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 1.03 7.45 -51.93 -0.39 0.64 16 31 H 0.27 7.71 8.73 -40.82 -0.36 7.35 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 34 H 0.08 1.48 6.92 -51.93 -0.36 1.13 16 35 H 0.41 6.31 8.64 -34.47 -0.30 6.02 16 36 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 37 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.12 1.11 6.14 -52.49 -0.32 0.79 16 40 H 0.05 0.39 7.95 -51.93 -0.41 -0.03 16 41 H 0.07 0.37 7.80 -51.92 -0.40 -0.04 16 42 H 0.05 0.41 7.95 -51.93 -0.41 -0.01 16 43 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.06 0.32 7.92 -51.93 -0.41 -0.09 16 45 H 0.07 0.44 6.20 -51.93 -0.32 0.12 16 46 H 0.12 1.30 6.73 -52.49 -0.35 0.94 16 47 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -32.52 386.90 -9.83 -42.35 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.18 Total: 6.11 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -1.11 Total: -13.28 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -0.31 Total: -70.25 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -1.91 Total: -43.73 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -4.49 Total: 19.92 kcal Atomic # 16 Polarization: 53.70 SS G_CDS: -0.66 Total: 53.05 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.52 -9.83 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282424795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.666 kcal (2) G-P(sol) polarization free energy of solvation -32.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds