Wall clock time and date at job start Wed Apr 1 2020 00:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46987 * 2 1 4 4 C 1.50692 * 109.47267 * 120.00602 * 2 1 3 5 5 H 1.08003 * 120.00316 * 114.36808 * 4 2 1 6 6 C 1.37886 * 119.99877 * 294.36601 * 4 2 1 7 7 N 1.31510 * 119.99961 * 156.89610 * 6 4 2 8 8 Si 1.86796 * 119.99750 * 337.17309 * 6 4 2 9 9 H 1.48495 * 109.47179 * 179.72455 * 8 6 4 10 10 H 1.48502 * 109.47231 * 299.72156 * 8 6 4 11 11 H 1.48498 * 109.47554 * 59.72235 * 8 6 4 12 12 N 1.46509 * 109.47062 * 240.00243 * 2 1 3 13 13 C 1.46502 * 119.99604 * 300.00516 * 12 2 1 14 14 S 1.65598 * 119.99835 * 119.99654 * 12 2 1 15 15 O 1.42102 * 106.40027 * 203.53979 * 14 12 2 16 16 O 1.42091 * 106.40355 * 336.46171 * 14 12 2 17 17 N 1.65598 * 107.21635 * 90.00560 * 14 12 2 18 18 C 1.46506 * 120.00181 * 64.99320 * 17 14 12 19 19 C 1.50702 * 109.46805 * 165.00281 * 18 17 14 20 20 C 1.38292 * 119.92302 * 269.72894 * 19 18 17 21 21 C 1.38108 * 120.07355 * 179.72912 * 20 19 18 22 22 C 1.38912 * 119.92141 * 0.54513 * 21 20 19 23 23 N 1.39668 * 120.07699 * 179.70355 * 22 21 20 24 24 C 1.46494 * 120.00466 * 180.02562 * 23 22 21 25 25 C 1.46508 * 119.99558 * 0.02583 * 23 22 21 26 26 C 1.38916 * 119.85356 * 359.72787 * 22 21 20 27 27 C 1.38106 * 119.92150 * 0.02562 * 26 22 21 28 28 H 1.09002 * 109.47176 * 293.29860 * 1 2 3 29 29 H 1.09005 * 109.47375 * 53.29697 * 1 2 3 30 30 H 1.09000 * 109.47483 * 173.29600 * 1 2 3 31 31 H 0.97006 * 120.00339 * 355.20022 * 7 6 4 32 32 H 1.08992 * 109.47772 * 90.00121 * 13 12 2 33 33 H 1.09003 * 109.46297 * 209.99546 * 13 12 2 34 34 H 1.08994 * 109.47613 * 329.99192 * 13 12 2 35 35 H 0.96998 * 120.00072 * 245.00203 * 17 14 12 36 36 H 1.08997 * 109.47104 * 285.00272 * 18 17 14 37 37 H 1.09000 * 109.46515 * 45.00774 * 18 17 14 38 38 H 1.07999 * 119.96043 * 359.97438 * 20 19 18 39 39 H 1.07994 * 120.03849 * 180.27200 * 21 20 19 40 40 H 1.08995 * 109.47059 * 60.00726 * 24 23 22 41 41 H 1.09007 * 109.47288 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.47335 * 300.00420 * 24 23 22 43 43 H 1.08997 * 109.47517 * 89.99764 * 25 23 22 44 44 H 1.08999 * 109.47001 * 209.99718 * 25 23 22 45 45 H 1.08999 * 109.47134 * 329.99360 * 25 23 22 46 46 H 1.07994 * 120.04045 * 180.02562 * 26 22 21 47 47 H 1.08002 * 119.96028 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7977 -0.1757 2.4794 7 7 1.8081 -0.9531 3.5401 8 14 1.4573 1.6517 2.6639 9 1 1.2326 1.9711 4.0966 10 1 2.6208 2.4253 2.1609 11 1 0.2479 2.0116 1.8810 12 7 2.0183 -0.6906 -1.1963 13 6 1.6642 -2.0932 -1.4281 14 16 2.9703 0.1143 -2.2863 15 8 2.8226 -0.5645 -3.5260 16 8 2.6902 1.4973 -2.1193 17 7 4.5436 -0.1042 -1.8182 18 6 5.1356 -1.4441 -1.8417 19 6 6.6347 -1.3328 -1.7354 20 6 7.4020 -1.2310 -2.8814 21 6 8.7756 -1.1232 -2.7874 22 6 9.3873 -1.1286 -1.5402 23 7 10.7767 -1.0260 -1.4415 24 6 11.4202 -1.0325 -0.1255 25 6 11.5907 -0.9120 -2.6543 26 6 8.6140 -1.2368 -0.3912 27 6 7.2405 -1.3391 -0.4923 28 1 -0.3634 0.4065 0.9439 29 1 -0.3634 0.6142 -0.8239 30 1 -0.3634 -1.0206 -0.1200 31 1 1.9114 -1.9121 3.4376 32 1 0.7375 -2.1443 -1.9995 33 1 2.4627 -2.5818 -1.9866 34 1 1.5294 -2.5969 -0.4711 35 1 5.0733 0.6550 -1.5283 36 1 4.7539 -2.0248 -1.0020 37 1 4.8735 -1.9407 -2.7760 38 1 6.9261 -1.2317 -3.8509 39 1 9.3739 -1.0393 -3.6825 40 1 11.1881 -1.9655 0.3879 41 1 12.4997 -0.9438 -0.2483 42 1 11.0517 -0.1924 0.4633 43 1 11.7139 0.1399 -2.9117 44 1 12.5687 -1.3601 -2.4790 45 1 11.0951 -1.4312 -3.4747 46 1 9.0864 -1.2409 0.5800 47 1 6.6387 -1.4236 0.4005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282424795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:54 Heat of formation + Delta-G solvation = -60.282021 kcal Electronic energy + Delta-G solvation = -28278.852995 eV Core-core repulsion = 24394.770577 eV Total energy + Delta-G solvation = -3884.082418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.65373 -38.39925 -38.04520 -37.75782 -36.93095 -35.56408 -34.58797 -32.07477 -31.55312 -31.17685 -28.99983 -27.31572 -27.05614 -26.60419 -24.41466 -23.29058 -22.45749 -21.41368 -20.35322 -19.48134 -18.82029 -18.59359 -18.17863 -17.36947 -16.81571 -16.54780 -15.94736 -15.85650 -15.61483 -15.43044 -15.17103 -14.97515 -14.84116 -14.59862 -14.42662 -13.92601 -13.84031 -13.69945 -13.53741 -13.47607 -13.45311 -13.26209 -13.20305 -13.16003 -12.99001 -12.96701 -12.79739 -12.44369 -12.26082 -12.09456 -11.85883 -11.72425 -11.64545 -11.19407 -10.70725 -10.53128 -10.35390 -9.85184 -9.80424 -8.64495 -8.21173 -6.26867 -0.35388 0.52310 0.57732 1.50951 1.54085 1.71960 1.99590 2.23877 2.49852 2.58128 2.94892 3.05579 3.40507 3.82930 3.89629 3.98872 4.07438 4.18740 4.25102 4.41991 4.49144 4.50657 4.52966 4.54574 4.66698 4.73294 4.75726 4.79901 4.83062 4.85421 4.88271 4.89442 4.93570 4.98095 5.10607 5.15910 5.32884 5.34472 5.44962 5.54626 5.75337 5.79359 5.90600 6.02412 6.11561 6.15276 6.34705 6.51983 6.71414 7.43493 8.68895 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.003344 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.117322 B = 8370.128145 C = 9694.025241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.246 3.754 3 H 0.038 0.962 4 C -0.601 4.601 5 H 0.045 0.955 6 C 0.001 3.999 7 N -0.926 5.926 8 Si 1.049 2.951 9 H -0.285 1.285 10 H -0.270 1.270 11 H -0.249 1.249 12 N -0.992 5.992 13 C 0.101 3.899 14 S 2.798 3.202 15 O -1.002 7.002 16 O -1.013 7.013 17 N -1.115 6.115 18 C 0.169 3.831 19 C -0.165 4.165 20 C -0.057 4.057 21 C -0.203 4.203 22 C 0.210 3.790 23 N -0.644 5.644 24 C 0.091 3.909 25 C 0.088 3.912 26 C -0.206 4.206 27 C -0.063 4.063 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.259 0.741 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.418 0.582 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.135 0.865 39 H 0.142 0.858 40 H 0.053 0.947 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.128 0.872 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.961 -2.048 -11.919 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.140 3.860 3 H 0.056 0.944 4 C -0.640 4.640 5 H 0.064 0.936 6 C -0.201 4.201 7 N -0.561 5.561 8 Si 0.872 3.128 9 H -0.211 1.211 10 H -0.196 1.196 11 H -0.174 1.174 12 N -0.833 5.833 13 C -0.045 4.045 14 S 2.807 3.193 15 O -0.985 6.985 16 O -0.998 6.998 17 N -0.877 5.877 18 C 0.044 3.956 19 C -0.168 4.168 20 C -0.077 4.077 21 C -0.225 4.225 22 C 0.107 3.893 23 N -0.356 5.356 24 C -0.052 4.052 25 C -0.055 4.055 26 C -0.228 4.228 27 C -0.082 4.082 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.253 0.747 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.072 0.928 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.091 0.909 46 H 0.146 0.854 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.484 -0.546 -11.633 21.007 hybrid contribution 0.524 -1.356 -0.055 1.455 sum 18.007 -1.903 -11.688 21.552 Atomic orbital electron populations 1.22333 0.97199 1.01368 1.00362 1.18759 0.92267 0.92183 0.82758 0.94408 1.22243 1.39678 1.10241 0.91861 0.93639 1.26564 0.93242 1.08089 0.92171 1.70958 1.46448 1.05896 1.32796 0.84001 0.79173 0.73005 0.76628 1.21121 1.19587 1.17383 1.57461 1.65423 1.22363 1.38049 1.21380 1.00784 0.80501 1.01813 1.01221 0.72953 0.72085 0.73077 1.93531 1.86479 1.76265 1.42241 1.93531 1.84599 1.34360 1.87276 1.55852 1.30628 1.16132 1.85085 1.20084 0.90770 0.82469 1.02276 1.19510 0.93960 1.09511 0.93846 1.21017 0.93272 0.95254 0.98113 1.20868 0.94804 1.10527 0.96347 1.18033 0.84104 0.93235 0.93905 1.46613 1.02233 1.79232 1.07479 1.21732 0.98771 1.01179 0.83507 1.21836 0.95500 1.01568 0.86570 1.20746 0.93510 1.10835 0.97753 1.20948 0.94425 0.95746 0.97094 0.92889 0.93602 0.92412 0.93204 0.92274 0.90734 0.91425 0.74744 0.91750 0.89426 0.84728 0.83990 0.92820 0.88623 0.93146 0.93050 0.89638 0.90940 0.85365 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.47 9.01 71.98 0.65 -5.82 16 2 C 0.25 11.25 2.22 44.24 0.10 11.35 16 3 H 0.04 1.82 5.49 -2.39 -0.01 1.81 16 4 C -0.60 -31.26 8.30 25.60 0.21 -31.05 16 5 H 0.05 2.51 7.38 -2.91 -0.02 2.49 16 6 C 0.00 0.06 5.20 84.66 0.44 0.50 16 7 N -0.93 -54.55 13.70 21.45 0.29 -54.26 16 8 Si 1.05 48.71 26.44 68.60 1.81 50.52 16 9 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.25 -10.56 6.12 99.48 0.61 -9.95 16 12 N -0.99 -39.18 3.12 -520.45 -1.62 -40.81 16 13 C 0.10 3.42 9.15 127.77 1.17 4.59 16 14 S 2.80 104.96 6.09 -56.49 -0.34 104.61 16 15 O -1.00 -38.49 16.68 -128.00 -2.14 -40.62 16 16 O -1.01 -43.92 16.70 -128.00 -2.14 -46.06 16 17 N -1.12 -35.55 6.05 -190.78 -1.15 -36.70 16 18 C 0.17 4.79 6.37 85.63 0.55 5.34 16 19 C -0.16 -4.32 5.28 -19.84 -0.10 -4.42 16 20 C -0.06 -1.31 9.69 22.25 0.22 -1.09 16 21 C -0.20 -4.19 9.21 22.40 0.21 -3.98 16 22 C 0.21 4.54 6.55 38.22 0.25 4.79 16 23 N -0.64 -10.63 3.41 -747.28 -2.55 -13.17 16 24 C 0.09 1.14 9.40 127.77 1.20 2.34 16 25 C 0.09 0.93 10.16 127.77 1.30 2.23 16 26 C -0.21 -4.92 9.31 22.40 0.21 -4.71 16 27 C -0.06 -1.68 9.69 22.25 0.22 -1.46 16 28 H 0.05 2.30 5.44 -2.39 -0.01 2.28 16 29 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.06 2.30 7.45 -2.39 -0.02 2.28 16 31 H 0.26 15.29 8.73 -92.70 -0.81 14.48 16 32 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 2.16 7.79 -2.39 -0.02 2.14 16 34 H 0.07 2.47 6.92 -2.39 -0.02 2.45 16 35 H 0.42 12.61 8.64 -96.75 -0.84 11.77 16 36 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 37 H 0.09 2.28 7.69 -2.39 -0.02 2.26 16 38 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 39 H 0.14 2.23 6.14 -2.91 -0.02 2.22 16 40 H 0.05 0.69 7.95 -2.39 -0.02 0.67 16 41 H 0.10 0.72 7.80 -2.38 -0.02 0.70 16 42 H 0.05 0.68 7.95 -2.39 -0.02 0.66 16 43 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.09 0.57 7.92 -2.39 -0.02 0.55 16 45 H 0.07 0.72 6.20 -2.39 -0.01 0.71 16 46 H 0.13 2.74 6.73 -2.91 -0.02 2.72 16 47 H 0.12 3.29 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -68.56 386.90 -1.22 -69.79 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.01 Total: 28.11 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 6.61 Total: -21.40 kcal Atomic # 7 Polarization: -139.91 SS G_CDS: -5.03 Total: -144.94 kcal Atomic # 8 Polarization: -82.41 SS G_CDS: -4.27 Total: -86.68 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 1.81 Total: 50.52 kcal Atomic # 16 Polarization: 104.96 SS G_CDS: -0.34 Total: 104.61 kcal Total: -68.56 -1.22 -69.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282424795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.505 kcal (2) G-P(sol) polarization free energy of solvation -68.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds