Wall clock time and date at job start Wed Apr 1 2020 00:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 N 1.46494 * 109.47325 * 179.97438 * 19 18 17 21 21 C 1.46499 * 120.00328 * 270.00207 * 20 19 18 22 22 C 1.39680 * 119.99943 * 89.99698 * 20 19 18 23 23 C 1.38914 * 120.07414 * 359.72549 * 22 20 19 24 24 C 1.38096 * 119.92379 * 179.76529 * 23 22 20 25 25 C 1.38286 * 120.07861 * 0.51138 * 24 23 22 26 26 C 1.38287 * 120.14439 * 359.74393 * 25 24 23 27 27 C 1.38100 * 120.07746 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 36 36 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 37 37 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 38 38 H 1.08999 * 109.47181 * 299.99992 * 19 18 17 39 39 H 1.09004 * 109.47142 * 59.99757 * 19 18 17 40 40 H 1.08997 * 109.47099 * 89.99964 * 21 20 19 41 41 H 1.09004 * 109.47426 * 209.99685 * 21 20 19 42 42 H 1.08998 * 109.47157 * 329.99587 * 21 20 19 43 43 H 1.08005 * 120.03393 * 0.02562 * 23 22 20 44 44 H 1.08002 * 119.96660 * 180.25600 * 24 23 22 45 45 H 1.07997 * 119.92887 * 179.72400 * 25 24 23 46 46 H 1.08006 * 119.96098 * 179.97438 * 26 25 24 47 47 H 1.08006 * 120.04058 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 7 -0.2016 -0.0363 6.3194 21 6 -1.6387 -0.1832 6.0754 22 6 0.3960 -0.7012 7.3925 23 6 1.7596 -0.5677 7.6219 24 6 2.3464 -1.2226 8.6867 25 6 1.5803 -2.0191 9.5180 26 6 0.2236 -2.1583 9.2893 27 6 -0.3708 -1.5016 8.2298 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.9053 1.7753 3.4681 36 1 0.3187 -0.4565 3.7178 37 1 1.7669 -0.8422 4.6782 38 1 1.4406 1.2293 6.0017 39 1 -0.0075 1.6149 5.0412 40 1 -1.8096 -1.0294 5.4100 41 1 -2.1522 -0.3554 7.0214 42 1 -2.0236 0.7259 5.6134 43 1 2.3593 0.0509 6.9706 44 1 3.4057 -1.1160 8.8681 45 1 2.0425 -2.5337 10.3473 46 1 -0.3719 -2.7815 9.9402 47 1 -1.4304 -1.6112 8.0515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282930076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:30 Heat of formation + Delta-G solvation = -34.222619 kcal Electronic energy + Delta-G solvation = -28358.937061 eV Core-core repulsion = 24475.984664 eV Total energy + Delta-G solvation = -3882.952397 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.79910 -37.07827 -36.63004 -36.17636 -35.24078 -34.75918 -32.59245 -31.24592 -30.14761 -29.11962 -28.87009 -25.73749 -25.57761 -25.14055 -23.28929 -22.21277 -20.94087 -20.66726 -18.84013 -17.90090 -17.32660 -16.85049 -16.53053 -16.03449 -15.75229 -15.49736 -15.16533 -14.93068 -14.53462 -14.17650 -14.08481 -13.78122 -13.53248 -13.48120 -13.14701 -12.83256 -12.74982 -12.43903 -12.28259 -12.04021 -11.75437 -11.71881 -11.58792 -11.48101 -11.42909 -11.36462 -11.24441 -10.97956 -10.89812 -10.81129 -10.49811 -10.30208 -10.06514 -10.02871 -9.38285 -9.25590 -9.02852 -8.46513 -8.00057 -7.48158 -6.08515 -4.14926 1.17320 1.33097 1.49379 2.82682 3.29844 3.34017 3.37508 3.54718 3.78886 4.11128 4.39579 4.61275 4.67045 4.74518 4.87390 4.97739 5.04913 5.06977 5.19912 5.23034 5.28154 5.35569 5.42235 5.49202 5.52930 5.56011 5.67658 5.70978 5.89817 5.96441 6.11665 6.16139 6.35318 6.38163 6.53487 6.60138 6.72576 6.73582 6.76712 6.98660 7.02481 7.11785 7.31781 7.46269 7.61955 7.77411 8.02504 8.26334 8.87151 9.50873 10.97216 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.002731 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.079212 B =10251.695300 C =10637.420194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.269 3.731 3 H 0.059 0.941 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.989 5.989 13 C 0.109 3.891 14 S 2.780 3.220 15 O -0.994 6.994 16 O -0.974 6.974 17 N -1.133 6.133 18 C 0.102 3.898 19 C 0.119 3.881 20 N -0.630 5.630 21 C 0.092 3.908 22 C 0.215 3.785 23 C -0.195 4.195 24 C -0.072 4.072 25 C -0.181 4.181 26 C -0.075 4.075 27 C -0.198 4.198 28 H 0.033 0.967 29 H 0.010 0.990 30 H 0.093 0.907 31 H 0.264 0.736 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.411 0.589 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.908 -1.845 21.172 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.832 5.832 13 C -0.037 4.037 14 S 2.789 3.211 15 O -0.978 6.978 16 O -0.957 6.957 17 N -0.892 5.892 18 C -0.027 4.027 19 C -0.007 4.007 20 N -0.341 5.341 21 C -0.051 4.051 22 C 0.114 3.886 23 C -0.217 4.217 24 C -0.091 4.091 25 C -0.201 4.201 26 C -0.094 4.094 27 C -0.220 4.220 28 H 0.052 0.948 29 H 0.029 0.971 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.244 0.756 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.123 -1.785 20.868 21.562 hybrid contribution -0.240 -0.112 -0.974 1.009 sum -5.363 -1.897 19.894 20.692 Atomic orbital electron populations 1.22116 0.98334 0.99661 1.00567 1.18721 0.91222 0.92986 0.80493 0.92353 1.21303 1.31619 1.13021 0.90057 0.91994 1.24908 0.94955 0.95011 0.99005 1.69847 1.36534 1.22721 1.23887 0.86548 0.79380 0.79567 0.81858 1.21214 1.20141 1.20243 1.57678 1.70024 1.19766 1.35752 1.21156 1.01733 0.82177 0.98646 1.01949 0.73597 0.73195 0.72393 1.93543 1.69027 1.60685 1.74522 1.93619 1.74275 1.56026 1.71817 1.56178 1.62595 1.17264 1.53140 1.21631 0.95376 0.94074 0.91573 1.21605 0.95943 0.92516 0.90588 1.46342 1.07471 1.51518 1.28778 1.21689 0.80102 1.01886 1.01449 1.17862 0.92004 0.91498 0.87276 1.20794 0.93225 1.06066 1.01649 1.20921 0.99459 0.95030 0.93657 1.20907 0.94292 1.03146 1.01787 1.20871 0.94846 0.97474 0.96223 1.20675 0.99686 1.03086 0.98584 0.94807 0.97133 0.88870 0.92649 0.93206 0.93479 0.90999 0.75595 0.91590 0.90397 0.89910 0.89899 0.93063 0.91331 0.91304 0.85846 0.86204 0.86642 0.86397 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.95 37.16 0.33 -2.93 16 2 C 0.27 6.49 2.62 -69.09 -0.18 6.31 16 3 H 0.06 1.56 6.91 -51.92 -0.36 1.20 16 4 C -0.52 -13.98 8.37 -34.44 -0.29 -14.27 16 5 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.64 11.32 55.43 0.63 -24.02 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.99 -20.26 3.12 -115.86 -0.36 -20.62 16 13 C 0.11 1.95 9.53 59.85 0.57 2.52 16 14 S 2.78 53.62 6.09 -107.50 -0.66 52.97 16 15 O -0.99 -20.60 16.68 -57.17 -0.95 -21.56 16 16 O -0.97 -22.40 16.70 -57.17 -0.95 -23.36 16 17 N -1.13 -15.80 6.05 -10.61 -0.06 -15.86 16 18 C 0.10 1.23 6.57 -4.04 -0.03 1.20 16 19 C 0.12 1.13 5.34 -4.04 -0.02 1.11 16 20 N -0.63 -6.08 3.01 -179.62 -0.54 -6.62 16 21 C 0.09 0.69 10.23 59.85 0.61 1.30 16 22 C 0.21 2.31 6.55 -83.78 -0.55 1.76 16 23 C -0.20 -2.16 9.20 -39.38 -0.36 -2.52 16 24 C -0.07 -0.73 10.04 -39.62 -0.40 -1.13 16 25 C -0.18 -1.72 10.04 -39.55 -0.40 -2.11 16 26 C -0.08 -0.69 10.04 -39.61 -0.40 -1.09 16 27 C -0.20 -1.93 9.21 -39.38 -0.36 -2.29 16 28 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 34 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 35 H 0.41 4.83 8.65 -34.47 -0.30 4.53 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.04 7.75 -51.93 -0.40 0.64 16 38 H 0.08 0.75 6.21 -51.93 -0.32 0.43 16 39 H 0.08 0.67 7.89 -51.93 -0.41 0.26 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.44 6.20 -51.93 -0.32 0.12 16 42 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 43 H 0.12 1.33 6.15 -52.48 -0.32 1.00 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 47 H 0.12 0.97 6.14 -52.48 -0.32 0.65 16 LS Contribution 389.28 15.07 5.87 5.87 Total: -1.00 -32.97 389.28 -10.68 -43.65 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -7.06 Total: 3.98 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -1.56 Total: -10.52 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -0.34 Total: -67.13 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -1.91 Total: -44.91 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 53.62 SS G_CDS: -0.66 Total: 52.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.97 -10.68 -43.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282930076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.427 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds