Wall clock time and date at job start Wed Apr 1 2020 00:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.46500 * 119.99925 * 65.00539 * 17 14 12 19 19 C 1.53002 * 109.47408 * 164.99913 * 18 17 14 20 20 N 1.46494 * 109.47325 * 179.97438 * 19 18 17 21 21 C 1.46499 * 120.00328 * 270.00207 * 20 19 18 22 22 C 1.39680 * 119.99943 * 89.99698 * 20 19 18 23 23 C 1.38914 * 120.07414 * 359.72549 * 22 20 19 24 24 C 1.38096 * 119.92379 * 179.76529 * 23 22 20 25 25 C 1.38286 * 120.07861 * 0.51138 * 24 23 22 26 26 C 1.38287 * 120.14439 * 359.74393 * 25 24 23 27 27 C 1.38100 * 120.07746 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 33 33 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 34 34 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 35 35 H 0.97005 * 120.00537 * 244.99777 * 17 14 12 36 36 H 1.09006 * 109.47312 * 284.99498 * 18 17 14 37 37 H 1.09004 * 109.47167 * 44.99686 * 18 17 14 38 38 H 1.08999 * 109.47181 * 299.99992 * 19 18 17 39 39 H 1.09004 * 109.47142 * 59.99757 * 19 18 17 40 40 H 1.08997 * 109.47099 * 89.99964 * 21 20 19 41 41 H 1.09004 * 109.47426 * 209.99685 * 21 20 19 42 42 H 1.08998 * 109.47157 * 329.99587 * 21 20 19 43 43 H 1.08005 * 120.03393 * 0.02562 * 23 22 20 44 44 H 1.08002 * 119.96660 * 180.25600 * 24 23 22 45 45 H 1.07997 * 119.92887 * 179.72400 * 25 24 23 46 46 H 1.08006 * 119.96098 * 179.97438 * 26 25 24 47 47 H 1.08006 * 120.04058 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.1509 -0.0350 4.2817 19 6 0.6085 0.8078 5.4378 20 7 -0.2016 -0.0363 6.3194 21 6 -1.6387 -0.1832 6.0754 22 6 0.3960 -0.7012 7.3925 23 6 1.7596 -0.5677 7.6219 24 6 2.3464 -1.2226 8.6867 25 6 1.5803 -2.0191 9.5180 26 6 0.2236 -2.1583 9.2893 27 6 -0.3708 -1.5016 8.2298 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7088 1.1611 -3.4845 32 1 2.4158 -2.7376 0.9718 33 1 1.6238 -2.2851 2.5003 34 1 0.6905 -2.3002 0.9847 35 1 1.9053 1.7753 3.4681 36 1 0.3187 -0.4565 3.7178 37 1 1.7669 -0.8422 4.6782 38 1 1.4406 1.2293 6.0017 39 1 -0.0075 1.6149 5.0412 40 1 -1.8096 -1.0294 5.4100 41 1 -2.1522 -0.3554 7.0214 42 1 -2.0236 0.7259 5.6134 43 1 2.3593 0.0509 6.9706 44 1 3.4057 -1.1160 8.8681 45 1 2.0425 -2.5337 10.3473 46 1 -0.3719 -2.7815 9.9402 47 1 -1.4304 -1.6112 8.0515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282930076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:29 Heat of formation + Delta-G solvation = -56.301815 kcal Electronic energy + Delta-G solvation = -28359.894487 eV Core-core repulsion = 24475.984664 eV Total energy + Delta-G solvation = -3883.909823 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.51702 -38.38282 -37.96483 -37.74450 -36.91328 -35.76564 -34.53528 -31.97934 -30.93258 -30.89604 -29.65508 -27.29668 -27.02562 -26.44045 -24.14650 -22.95542 -22.61050 -21.53890 -20.30037 -18.88928 -18.65139 -18.51877 -18.17336 -17.38000 -16.85020 -16.51303 -16.33297 -16.06859 -15.76672 -15.26007 -15.05710 -14.88384 -14.79572 -14.56803 -14.50117 -14.24042 -13.76060 -13.50346 -13.42605 -13.40039 -13.21300 -13.14962 -13.02562 -12.90414 -12.79959 -12.71963 -12.60821 -12.48939 -12.22734 -12.21884 -12.15243 -11.88899 -11.59806 -11.16347 -10.82101 -10.52922 -10.47091 -9.76456 -9.69751 -8.20682 -8.12296 -6.25561 -0.35763 0.59692 0.75578 1.42439 1.44372 1.51294 1.90076 2.27761 2.43594 2.65531 3.05165 3.15989 3.42149 3.85281 3.90504 4.00137 4.05356 4.17398 4.36490 4.37860 4.46179 4.52028 4.63668 4.65096 4.68035 4.73586 4.80479 4.82040 4.92938 4.95608 4.99610 5.00810 5.05783 5.14846 5.16310 5.22380 5.42585 5.60958 5.67495 5.69410 5.81243 5.87008 6.01929 6.05213 6.18426 6.30402 6.35951 6.59679 6.81533 7.43272 8.91564 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.002731 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.079212 B =10251.695300 C =10637.420194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.273 3.727 3 H 0.026 0.974 4 C -0.541 4.541 5 H 0.054 0.946 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.281 1.281 10 H -0.280 1.280 11 H -0.267 1.267 12 N -0.996 5.996 13 C 0.105 3.895 14 S 2.797 3.203 15 O -1.010 7.010 16 O -1.015 7.015 17 N -1.115 6.115 18 C 0.100 3.900 19 C 0.122 3.878 20 N -0.632 5.632 21 C 0.087 3.913 22 C 0.200 3.800 23 C -0.217 4.217 24 C -0.085 4.085 25 C -0.190 4.190 26 C -0.080 4.080 27 C -0.205 4.205 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.066 0.934 31 H 0.265 0.735 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.424 0.576 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.119 0.881 44 H 0.129 0.871 45 H 0.133 0.867 46 H 0.141 0.859 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.286 -2.599 22.454 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.169 3.831 3 H 0.044 0.956 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.779 3.221 9 H -0.206 1.206 10 H -0.206 1.206 11 H -0.192 1.192 12 N -0.838 5.838 13 C -0.041 4.041 14 S 2.805 3.195 15 O -0.994 6.994 16 O -0.999 6.999 17 N -0.878 5.878 18 C -0.027 4.027 19 C -0.003 4.003 20 N -0.343 5.343 21 C -0.055 4.055 22 C 0.099 3.901 23 C -0.239 4.239 24 C -0.104 4.104 25 C -0.210 4.210 26 C -0.098 4.098 27 C -0.228 4.228 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.260 0.740 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.137 0.863 44 H 0.147 0.853 45 H 0.151 0.849 46 H 0.159 0.841 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.509 -2.551 22.159 23.236 hybrid contribution 0.193 0.103 -1.253 1.272 sum -6.316 -2.447 20.906 21.976 Atomic orbital electron populations 1.21903 0.96653 1.00211 1.00601 1.18408 0.92359 0.91316 0.81003 0.95585 1.21635 1.31739 1.13071 0.91606 0.92735 1.25611 0.95211 0.95719 1.01563 1.69957 1.37178 1.23597 1.24425 0.85685 0.78429 0.79069 0.78893 1.20581 1.20599 1.19181 1.57556 1.69997 1.20922 1.35308 1.21322 1.01775 0.80551 1.00458 1.01216 0.73579 0.72347 0.72318 1.93519 1.69869 1.61336 1.74626 1.93558 1.75800 1.57344 1.73244 1.55635 1.62141 1.18142 1.51923 1.21804 0.94860 0.93999 0.92068 1.21567 0.96570 0.92431 0.89730 1.46437 1.08188 1.51378 1.28301 1.21841 0.78963 1.02504 1.02221 1.18063 0.92096 0.92001 0.87942 1.20921 0.93775 1.06897 1.02309 1.21161 1.00248 0.95244 0.93758 1.21196 0.94675 1.02981 1.02120 1.21216 0.95021 0.97308 0.96275 1.20943 1.00530 1.02768 0.98512 0.93900 0.94357 0.91480 0.92594 0.94117 0.90755 0.90190 0.73997 0.90967 0.91664 0.89659 0.87921 0.93169 0.90195 0.90064 0.86306 0.85275 0.84937 0.84108 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.83 8.95 71.98 0.64 -5.18 16 2 C 0.27 13.26 2.62 44.24 0.12 13.37 16 3 H 0.03 1.44 6.91 -2.38 -0.02 1.42 16 4 C -0.54 -29.29 8.37 25.60 0.21 -29.07 16 5 H 0.05 2.95 7.65 -2.91 -0.02 2.93 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -50.82 11.32 21.45 0.24 -50.58 16 8 Si 0.95 43.26 29.54 68.60 2.03 45.28 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 N -1.00 -40.41 3.12 -520.46 -1.62 -42.03 16 13 C 0.10 3.61 9.53 127.77 1.22 4.82 16 14 S 2.80 107.52 6.09 -56.49 -0.34 107.18 16 15 O -1.01 -41.57 16.68 -128.00 -2.14 -43.71 16 16 O -1.02 -47.62 16.70 -128.00 -2.14 -49.76 16 17 N -1.11 -29.81 6.05 -187.47 -1.14 -30.95 16 18 C 0.10 2.26 6.57 86.38 0.57 2.83 16 19 C 0.12 2.10 5.34 86.38 0.46 2.56 16 20 N -0.63 -10.94 3.01 -722.20 -2.17 -13.11 16 21 C 0.09 1.08 10.23 127.77 1.31 2.39 16 22 C 0.20 4.03 6.55 38.21 0.25 4.28 16 23 C -0.22 -4.67 9.20 22.40 0.21 -4.46 16 24 C -0.09 -1.68 10.04 22.25 0.22 -1.46 16 25 C -0.19 -3.31 10.04 22.29 0.22 -3.08 16 26 C -0.08 -1.30 10.04 22.25 0.22 -1.08 16 27 C -0.21 -3.60 9.21 22.40 0.21 -3.40 16 28 H 0.04 1.74 6.66 -2.39 -0.02 1.72 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 3.30 6.07 -2.39 -0.01 3.28 16 31 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 2.13 7.79 -2.38 -0.02 2.11 16 34 H 0.08 2.61 6.43 -2.39 -0.02 2.59 16 35 H 0.42 9.39 8.65 -96.74 -0.84 8.56 16 36 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.06 1.66 7.75 -2.38 -0.02 1.65 16 38 H 0.09 1.43 6.21 -2.39 -0.01 1.42 16 39 H 0.10 1.37 7.89 -2.38 -0.02 1.35 16 40 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.08 0.81 6.20 -2.39 -0.01 0.79 16 42 H 0.08 0.81 7.89 -2.39 -0.02 0.79 16 43 H 0.12 2.54 6.15 -2.91 -0.02 2.52 16 44 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 45 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 46 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 47 H 0.14 1.85 6.14 -2.91 -0.02 1.84 16 Total: -1.00 -70.90 389.28 -0.83 -71.72 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.14 Total: 21.96 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 6.31 Total: -16.00 kcal Atomic # 7 Polarization: -131.99 SS G_CDS: -4.69 Total: -136.67 kcal Atomic # 8 Polarization: -89.20 SS G_CDS: -4.27 Total: -93.47 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 107.52 SS G_CDS: -0.34 Total: 107.18 kcal Total: -70.90 -0.83 -71.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282930076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.422 kcal (2) G-P(sol) polarization free energy of solvation -70.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds