Wall clock time and date at job start Wed Apr 1 2020 00:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.50696 * 109.47144 * 119.99764 * 2 1 3 5 5 H 1.08002 * 119.99821 * 114.49102 * 4 2 1 6 6 C 1.37869 * 120.00229 * 294.49202 * 4 2 1 7 7 N 1.31515 * 120.00095 * 164.52587 * 6 4 2 8 8 Si 1.86802 * 120.00055 * 344.79770 * 6 4 2 9 9 H 1.48500 * 109.47226 * 269.72753 * 8 6 4 10 10 H 1.48504 * 109.46735 * 29.72658 * 8 6 4 11 11 H 1.48497 * 109.47182 * 149.72492 * 8 6 4 12 12 N 1.46503 * 109.46839 * 240.00018 * 2 1 3 13 13 C 1.46508 * 119.99926 * 299.99455 * 12 2 1 14 14 S 1.65596 * 120.00083 * 120.00020 * 12 2 1 15 15 O 1.42092 * 106.40337 * 203.53885 * 14 12 2 16 16 O 1.42104 * 106.40050 * 336.45374 * 14 12 2 17 17 N 1.65599 * 107.21899 * 89.99694 * 14 12 2 18 18 C 1.46496 * 120.00406 * 65.00128 * 17 14 12 19 19 C 1.52991 * 109.47449 * 164.99931 * 18 17 14 20 20 N 1.46500 * 109.47082 * 179.97438 * 19 18 17 21 21 C 1.46496 * 120.00335 * 269.99621 * 20 19 18 22 22 C 1.39677 * 119.99848 * 90.00246 * 20 19 18 23 23 C 1.38909 * 120.07719 * 359.71904 * 22 20 19 24 24 C 1.38103 * 119.92769 * 179.77104 * 23 22 20 25 25 C 1.38286 * 120.07365 * 0.50891 * 24 23 22 26 26 C 1.38289 * 120.14942 * 359.74298 * 25 24 23 27 27 C 1.38105 * 120.07191 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47107 * 293.76516 * 1 2 3 29 29 H 1.08996 * 109.47394 * 53.77285 * 1 2 3 30 30 H 1.09007 * 109.46851 * 173.77444 * 1 2 3 31 31 H 0.96993 * 120.00377 * 355.18434 * 7 6 4 32 32 H 1.08998 * 109.46944 * 90.00357 * 13 12 2 33 33 H 1.08996 * 109.46907 * 209.99921 * 13 12 2 34 34 H 1.08998 * 109.46952 * 330.00279 * 13 12 2 35 35 H 0.97003 * 119.99684 * 245.00392 * 17 14 12 36 36 H 1.08997 * 109.46718 * 285.00270 * 18 17 14 37 37 H 1.09004 * 109.46661 * 44.99333 * 18 17 14 38 38 H 1.09004 * 109.47071 * 299.99898 * 19 18 17 39 39 H 1.08999 * 109.47346 * 60.00344 * 19 18 17 40 40 H 1.09009 * 109.46989 * 89.99830 * 21 20 19 41 41 H 1.08996 * 109.47923 * 209.99990 * 21 20 19 42 42 H 1.09003 * 109.47079 * 330.00508 * 21 20 19 43 43 H 1.08004 * 120.03843 * 0.02562 * 23 22 20 44 44 H 1.07997 * 119.96620 * 180.25974 * 24 23 22 45 45 H 1.08001 * 119.92785 * 179.72734 * 25 24 23 46 46 H 1.07995 * 119.96220 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.03467 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5779 -1.6374 1.1339 6 6 1.7955 -0.1768 2.4795 7 7 1.9532 -0.9202 3.5528 8 14 1.2432 1.5998 2.6468 9 1 2.4336 2.4781 2.7770 10 1 0.4676 1.9925 1.4428 11 1 0.3894 1.7412 3.8535 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9703 0.1141 -2.2863 15 8 2.8226 -0.5646 -3.5259 16 8 2.6902 1.4972 -2.1194 17 7 4.5437 -0.1043 -1.8181 18 6 5.1358 -1.4440 -1.8416 19 6 6.6577 -1.3311 -1.7336 20 7 7.2496 -2.6709 -1.7565 21 6 7.4604 -3.4001 -0.5035 22 6 7.6132 -3.2531 -2.9730 23 6 7.4088 -2.5655 -4.1625 24 6 7.7738 -3.1421 -5.3631 25 6 8.3325 -4.4069 -5.3830 26 6 8.5325 -5.0964 -4.2011 27 6 8.1742 -4.5237 -2.9965 28 1 -0.3633 0.4141 0.9405 29 1 -0.3634 0.6073 -0.8290 30 1 -0.3633 -1.0217 -0.1115 31 1 2.1679 -1.8619 3.4633 32 1 0.7376 -2.1445 -1.9993 33 1 2.4628 -2.5819 -1.9864 34 1 1.5296 -2.5969 -0.4707 35 1 5.0732 0.6550 -1.5283 36 1 4.7540 -2.0246 -1.0018 37 1 4.8735 -1.9408 -2.7758 38 1 7.0394 -0.7504 -2.5735 39 1 6.9198 -0.8344 -0.7995 40 1 6.5751 -3.9938 -0.2753 41 1 8.3227 -4.0587 -0.6069 42 1 7.6401 -2.6904 0.3041 43 1 6.9687 -1.5793 -4.1481 44 1 7.6190 -2.6063 -6.2880 45 1 8.6129 -4.8574 -6.3236 46 1 8.9687 -6.0842 -4.2201 47 1 8.3304 -5.0629 -2.0739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282930083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:32 Heat of formation + Delta-G solvation = -34.697232 kcal Electronic energy + Delta-G solvation = -28618.614941 eV Core-core repulsion = 24735.641963 eV Total energy + Delta-G solvation = -3882.972978 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.74913 -37.06201 -36.76222 -36.38699 -35.41356 -34.72451 -32.64613 -31.20616 -30.09937 -29.88803 -28.81566 -25.80372 -25.58999 -24.69747 -23.24156 -22.16716 -20.86886 -20.60688 -18.92269 -17.85008 -17.63370 -17.27221 -16.94399 -16.22040 -15.72289 -15.52738 -15.14908 -14.88273 -14.36918 -14.05021 -13.99832 -13.72435 -13.69259 -13.47634 -13.25014 -12.97415 -12.69068 -12.42381 -12.20297 -12.12586 -12.02836 -11.82161 -11.74267 -11.64999 -11.58226 -11.51939 -11.47085 -11.35396 -10.86154 -10.78038 -10.55348 -10.12726 -10.01252 -9.66389 -9.36220 -9.16908 -8.99263 -8.49718 -8.15711 -7.42402 -6.55073 -4.21819 1.08263 1.36677 1.53368 2.87138 3.35153 3.40142 3.43035 3.54206 3.82639 3.99832 4.40218 4.67394 4.71928 4.77593 4.91314 4.93214 5.09859 5.11742 5.14026 5.27871 5.35643 5.38866 5.42021 5.49042 5.57761 5.65015 5.71217 5.78447 5.94401 5.99202 6.02195 6.12996 6.21015 6.35444 6.41735 6.44218 6.53421 6.56617 6.64388 6.77347 6.92034 7.07647 7.14914 7.27773 7.37847 7.46534 7.89100 8.25395 8.77661 9.46392 10.81087 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.003314 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.701775 B = 8447.168750 C = 9367.699782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.244 3.756 3 H 0.050 0.950 4 C -0.608 4.608 5 H 0.064 0.936 6 C 0.038 3.962 7 N -0.901 5.901 8 Si 1.030 2.970 9 H -0.283 1.283 10 H -0.267 1.267 11 H -0.283 1.283 12 N -0.984 5.984 13 C 0.106 3.894 14 S 2.784 3.216 15 O -0.993 6.993 16 O -0.983 6.983 17 N -1.126 6.126 18 C 0.103 3.897 19 C 0.119 3.881 20 N -0.628 5.628 21 C 0.091 3.909 22 C 0.216 3.784 23 C -0.196 4.196 24 C -0.072 4.072 25 C -0.183 4.183 26 C -0.075 4.075 27 C -0.198 4.198 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.049 0.951 31 H 0.269 0.731 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.413 0.587 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.917 -5.390 -11.864 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.140 3.860 3 H 0.067 0.933 4 C -0.647 4.647 5 H 0.082 0.918 6 C -0.169 4.169 7 N -0.534 5.534 8 Si 0.857 3.143 9 H -0.210 1.210 10 H -0.192 1.192 11 H -0.209 1.209 12 N -0.826 5.826 13 C -0.040 4.040 14 S 2.792 3.208 15 O -0.976 6.976 16 O -0.967 6.967 17 N -0.885 5.885 18 C -0.025 4.025 19 C -0.006 4.006 20 N -0.339 5.339 21 C -0.052 4.052 22 C 0.115 3.885 23 C -0.219 4.219 24 C -0.091 4.091 25 C -0.203 4.203 26 C -0.094 4.094 27 C -0.221 4.221 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.246 0.754 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.133 0.867 46 H 0.136 0.864 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.102 -3.824 -11.390 16.359 hybrid contribution 0.667 -1.221 -0.442 1.460 sum 11.768 -5.045 -11.832 17.434 Atomic orbital electron populations 1.22411 0.98440 1.00398 0.99921 1.19033 0.91347 0.92902 0.82741 0.93284 1.22204 1.40438 1.11266 0.90798 0.91771 1.25648 0.94129 1.05195 0.91887 1.70821 1.43663 1.08209 1.30753 0.84308 0.77711 0.75749 0.76499 1.20989 1.19175 1.20923 1.57486 1.64598 1.21429 1.39127 1.21225 0.99122 0.81741 1.01940 1.01769 0.72586 0.73037 0.73360 1.93556 1.85914 1.76258 1.41914 1.93586 1.83691 1.32497 1.86947 1.55912 1.32343 1.14769 1.85490 1.21628 0.94636 0.83714 1.02538 1.21594 0.91714 0.83731 1.03573 1.46355 1.66688 1.17105 1.03764 1.21704 1.01187 0.97104 0.85175 1.17875 0.92965 0.92077 0.85619 1.20780 1.08198 1.01499 0.91378 1.20906 0.96069 0.94997 0.97132 1.20894 1.05358 0.96117 0.97919 1.20868 0.97515 0.98926 0.92061 1.20688 1.07429 0.95291 0.98663 0.92245 0.95350 0.93189 0.92143 0.93682 0.93110 0.90107 0.75435 0.91233 0.90586 0.90000 0.89750 0.92994 0.91348 0.91164 0.85899 0.86265 0.86678 0.86407 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.57 37.16 0.32 -2.94 16 2 C 0.24 5.57 2.17 -69.08 -0.15 5.42 16 3 H 0.05 1.17 5.54 -51.93 -0.29 0.88 16 4 C -0.61 -15.47 8.37 -34.45 -0.29 -15.76 16 5 H 0.06 1.72 7.38 -52.49 -0.39 1.33 16 6 C 0.04 1.01 5.33 -17.82 -0.09 0.92 16 7 N -0.90 -25.86 13.70 55.43 0.76 -25.10 16 8 Si 1.03 23.94 26.17 -169.99 -4.45 19.49 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.27 -5.78 5.53 56.52 0.31 -5.47 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.98 -19.59 3.12 -115.85 -0.36 -19.95 16 13 C 0.11 1.86 9.16 59.85 0.55 2.41 16 14 S 2.78 52.07 6.09 -107.50 -0.66 51.42 16 15 O -0.99 -19.71 16.68 -57.18 -0.95 -20.66 16 16 O -0.98 -20.96 16.70 -57.18 -0.95 -21.92 16 17 N -1.13 -16.74 6.05 -10.62 -0.06 -16.80 16 18 C 0.10 1.39 6.57 -4.05 -0.03 1.37 16 19 C 0.12 1.31 5.34 -4.05 -0.02 1.29 16 20 N -0.63 -6.94 3.01 -179.62 -0.54 -7.48 16 21 C 0.09 0.86 10.23 59.84 0.61 1.47 16 22 C 0.22 2.53 6.55 -83.79 -0.55 1.99 16 23 C -0.20 -2.30 9.20 -39.38 -0.36 -2.66 16 24 C -0.07 -0.77 10.04 -39.61 -0.40 -1.17 16 25 C -0.18 -1.83 10.04 -39.55 -0.40 -2.23 16 26 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 27 C -0.20 -2.12 9.21 -39.38 -0.36 -2.48 16 28 H 0.06 1.29 5.06 -51.93 -0.26 1.02 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 1.01 7.47 -51.93 -0.39 0.62 16 31 H 0.27 7.65 8.73 -40.82 -0.36 7.29 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.79 7.79 -51.93 -0.40 0.39 16 34 H 0.08 1.49 6.92 -51.93 -0.36 1.13 16 35 H 0.41 5.26 8.65 -34.47 -0.30 4.96 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.08 7.75 -51.93 -0.40 0.68 16 38 H 0.08 0.83 6.21 -51.93 -0.32 0.50 16 39 H 0.08 0.85 7.89 -51.93 -0.41 0.44 16 40 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 41 H 0.07 0.54 6.20 -51.93 -0.32 0.22 16 42 H 0.07 0.62 7.89 -51.93 -0.41 0.21 16 43 H 0.12 1.39 6.15 -52.48 -0.32 1.07 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.12 1.11 6.14 -52.48 -0.32 0.79 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -32.08 384.61 -10.09 -42.17 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.10 Total: 6.57 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.57 Total: -13.53 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -0.21 Total: -69.34 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -1.91 Total: -42.58 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -4.45 Total: 19.49 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.66 Total: 51.42 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.08 -10.09 -42.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282930083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.473 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds