Wall clock time and date at job start Wed Apr 1 2020 00:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46821 * 2 1 4 4 C 1.50696 * 109.47144 * 119.99764 * 2 1 3 5 5 H 1.08002 * 119.99821 * 114.49102 * 4 2 1 6 6 C 1.37869 * 120.00229 * 294.49202 * 4 2 1 7 7 N 1.31515 * 120.00095 * 164.52587 * 6 4 2 8 8 Si 1.86802 * 120.00055 * 344.79770 * 6 4 2 9 9 H 1.48500 * 109.47226 * 269.72753 * 8 6 4 10 10 H 1.48504 * 109.46735 * 29.72658 * 8 6 4 11 11 H 1.48497 * 109.47182 * 149.72492 * 8 6 4 12 12 N 1.46503 * 109.46839 * 240.00018 * 2 1 3 13 13 C 1.46508 * 119.99926 * 299.99455 * 12 2 1 14 14 S 1.65596 * 120.00083 * 120.00020 * 12 2 1 15 15 O 1.42092 * 106.40337 * 203.53885 * 14 12 2 16 16 O 1.42104 * 106.40050 * 336.45374 * 14 12 2 17 17 N 1.65599 * 107.21899 * 89.99694 * 14 12 2 18 18 C 1.46496 * 120.00406 * 65.00128 * 17 14 12 19 19 C 1.52991 * 109.47449 * 164.99931 * 18 17 14 20 20 N 1.46500 * 109.47082 * 179.97438 * 19 18 17 21 21 C 1.46496 * 120.00335 * 269.99621 * 20 19 18 22 22 C 1.39677 * 119.99848 * 90.00246 * 20 19 18 23 23 C 1.38909 * 120.07719 * 359.71904 * 22 20 19 24 24 C 1.38103 * 119.92769 * 179.77104 * 23 22 20 25 25 C 1.38286 * 120.07365 * 0.50891 * 24 23 22 26 26 C 1.38289 * 120.14942 * 359.74298 * 25 24 23 27 27 C 1.38105 * 120.07191 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47107 * 293.76516 * 1 2 3 29 29 H 1.08996 * 109.47394 * 53.77285 * 1 2 3 30 30 H 1.09007 * 109.46851 * 173.77444 * 1 2 3 31 31 H 0.96993 * 120.00377 * 355.18434 * 7 6 4 32 32 H 1.08998 * 109.46944 * 90.00357 * 13 12 2 33 33 H 1.08996 * 109.46907 * 209.99921 * 13 12 2 34 34 H 1.08998 * 109.46952 * 330.00279 * 13 12 2 35 35 H 0.97003 * 119.99684 * 245.00392 * 17 14 12 36 36 H 1.08997 * 109.46718 * 285.00270 * 18 17 14 37 37 H 1.09004 * 109.46661 * 44.99333 * 18 17 14 38 38 H 1.09004 * 109.47071 * 299.99898 * 19 18 17 39 39 H 1.08999 * 109.47346 * 60.00344 * 19 18 17 40 40 H 1.09009 * 109.46989 * 89.99830 * 21 20 19 41 41 H 1.08996 * 109.47923 * 209.99990 * 21 20 19 42 42 H 1.09003 * 109.47079 * 330.00508 * 21 20 19 43 43 H 1.08004 * 120.03843 * 0.02562 * 23 22 20 44 44 H 1.07997 * 119.96620 * 180.25974 * 24 23 22 45 45 H 1.08001 * 119.92785 * 179.72734 * 25 24 23 46 46 H 1.07995 * 119.96220 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.03467 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.5779 -1.6374 1.1339 6 6 1.7955 -0.1768 2.4795 7 7 1.9532 -0.9202 3.5528 8 14 1.2432 1.5998 2.6468 9 1 2.4336 2.4781 2.7770 10 1 0.4676 1.9925 1.4428 11 1 0.3894 1.7412 3.8535 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9703 0.1141 -2.2863 15 8 2.8226 -0.5646 -3.5259 16 8 2.6902 1.4972 -2.1194 17 7 4.5437 -0.1043 -1.8181 18 6 5.1358 -1.4440 -1.8416 19 6 6.6577 -1.3311 -1.7336 20 7 7.2496 -2.6709 -1.7565 21 6 7.4604 -3.4001 -0.5035 22 6 7.6132 -3.2531 -2.9730 23 6 7.4088 -2.5655 -4.1625 24 6 7.7738 -3.1421 -5.3631 25 6 8.3325 -4.4069 -5.3830 26 6 8.5325 -5.0964 -4.2011 27 6 8.1742 -4.5237 -2.9965 28 1 -0.3633 0.4141 0.9405 29 1 -0.3634 0.6073 -0.8290 30 1 -0.3633 -1.0217 -0.1115 31 1 2.1679 -1.8619 3.4633 32 1 0.7376 -2.1445 -1.9993 33 1 2.4628 -2.5819 -1.9864 34 1 1.5296 -2.5969 -0.4707 35 1 5.0732 0.6550 -1.5283 36 1 4.7540 -2.0246 -1.0018 37 1 4.8735 -1.9408 -2.7758 38 1 7.0394 -0.7504 -2.5735 39 1 6.9198 -0.8344 -0.7995 40 1 6.5751 -3.9938 -0.2753 41 1 8.3227 -4.0587 -0.6069 42 1 7.6401 -2.6904 0.3041 43 1 6.9687 -1.5793 -4.1481 44 1 7.6190 -2.6063 -6.2880 45 1 8.6129 -4.8574 -6.3236 46 1 8.9687 -6.0842 -4.2201 47 1 8.3304 -5.0629 -2.0739 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282930083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:31 Heat of formation + Delta-G solvation = -56.646314 kcal Electronic energy + Delta-G solvation = -28619.566724 eV Core-core repulsion = 24735.641963 eV Total energy + Delta-G solvation = -3883.924762 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55779 -38.46760 -38.11903 -37.80933 -36.99732 -35.81013 -34.61271 -32.01498 -31.64462 -30.94122 -29.72008 -27.31177 -26.62961 -26.50656 -24.19858 -22.98565 -22.50734 -21.58779 -20.39371 -19.52561 -18.85771 -18.68592 -18.43695 -17.50981 -16.71677 -16.50176 -16.36771 -15.86296 -15.76198 -15.44503 -15.16596 -14.99002 -14.84759 -14.69680 -14.51170 -14.28335 -13.97037 -13.62081 -13.60895 -13.47970 -13.46930 -13.29278 -13.27190 -13.05867 -12.97655 -12.79236 -12.56052 -12.46936 -12.24844 -12.22778 -11.92879 -11.63710 -11.42866 -11.13086 -10.86819 -10.59380 -10.45198 -9.87160 -9.79221 -8.65265 -8.25474 -6.32466 -0.40543 0.56881 0.72715 1.52470 1.53225 1.71086 1.78924 2.20629 2.49548 2.55695 3.02243 3.09220 3.33171 3.78572 3.84909 3.91288 3.98276 4.14049 4.30454 4.32462 4.40028 4.44083 4.48319 4.58292 4.60787 4.65214 4.66659 4.72696 4.76160 4.80449 4.87028 4.89304 4.90846 4.98597 5.03846 5.19034 5.27150 5.39229 5.50850 5.64543 5.69063 5.78192 5.96318 6.00322 6.06067 6.11467 6.29643 6.55887 6.66737 7.41785 8.69346 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.003314 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.701775 B = 8447.168750 C = 9367.699782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.244 3.756 3 H 0.044 0.956 4 C -0.593 4.593 5 H 0.041 0.959 6 C -0.006 4.006 7 N -0.934 5.934 8 Si 1.058 2.942 9 H -0.274 1.274 10 H -0.242 1.242 11 H -0.285 1.285 12 N -0.992 5.992 13 C 0.103 3.897 14 S 2.799 3.201 15 O -1.003 7.003 16 O -1.008 7.008 17 N -1.115 6.115 18 C 0.106 3.894 19 C 0.123 3.877 20 N -0.632 5.632 21 C 0.089 3.911 22 C 0.199 3.801 23 C -0.215 4.215 24 C -0.083 4.083 25 C -0.188 4.188 26 C -0.079 4.079 27 C -0.208 4.208 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.257 0.743 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.424 0.576 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.043 0.957 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.141 0.859 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.574 -5.269 -13.171 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.138 3.862 3 H 0.062 0.938 4 C -0.632 4.632 5 H 0.060 0.940 6 C -0.207 4.207 7 N -0.570 5.570 8 Si 0.880 3.120 9 H -0.200 1.200 10 H -0.166 1.166 11 H -0.211 1.211 12 N -0.833 5.833 13 C -0.043 4.043 14 S 2.807 3.193 15 O -0.987 6.987 16 O -0.992 6.992 17 N -0.878 5.878 18 C -0.022 4.022 19 C -0.002 4.002 20 N -0.343 5.343 21 C -0.054 4.054 22 C 0.098 3.902 23 C -0.237 4.237 24 C -0.102 4.102 25 C -0.208 4.208 26 C -0.098 4.098 27 C -0.230 4.230 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.260 0.740 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.139 0.861 44 H 0.151 0.849 45 H 0.153 0.847 46 H 0.159 0.841 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.762 -3.715 -12.723 17.721 hybrid contribution 0.542 -1.379 -0.133 1.488 sum 12.305 -5.094 -12.856 18.510 Atomic orbital electron populations 1.22382 0.97202 1.01311 1.00493 1.18863 0.92339 0.92389 0.82596 0.93811 1.22300 1.38888 1.10115 0.91940 0.94028 1.26706 0.94173 1.07817 0.91970 1.70929 1.46517 1.07807 1.31765 0.83965 0.78122 0.72493 0.77410 1.20028 1.16589 1.21076 1.57464 1.65406 1.22230 1.38213 1.21334 1.00564 0.80648 1.01705 1.01217 0.72978 0.72134 0.72981 1.93542 1.86399 1.76338 1.42395 1.93546 1.84462 1.33971 1.87215 1.55585 1.31143 1.15934 1.85172 1.21686 0.96435 0.82532 1.01594 1.21553 0.89767 0.84294 1.04609 1.46418 1.66623 1.17152 1.04112 1.21787 1.01455 0.97353 0.84787 1.18093 0.93641 0.92719 0.85794 1.20921 1.09056 1.01769 0.92000 1.21178 0.96002 0.95576 0.97419 1.21215 1.04736 0.95893 0.98971 1.21213 0.96947 0.99894 0.91710 1.20939 1.07313 0.95088 0.99666 0.92624 0.93538 0.92520 0.93428 0.92201 0.91425 0.91405 0.74045 0.92478 0.91242 0.88968 0.88676 0.93829 0.89815 0.90620 0.86130 0.84884 0.84675 0.84091 0.84897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.34 8.57 71.98 0.62 -5.72 16 2 C 0.24 10.83 2.17 44.24 0.10 10.93 16 3 H 0.04 2.02 5.54 -2.39 -0.01 2.01 16 4 C -0.59 -30.18 8.37 25.60 0.21 -29.96 16 5 H 0.04 2.27 7.38 -2.91 -0.02 2.25 16 6 C -0.01 -0.35 5.33 84.65 0.45 0.10 16 7 N -0.93 -54.45 13.70 21.44 0.29 -54.15 16 8 Si 1.06 47.32 26.17 68.60 1.80 49.11 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 10 H -0.24 -9.81 5.53 99.48 0.55 -9.26 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 N -0.99 -38.42 3.12 -520.43 -1.62 -40.05 16 13 C 0.10 3.53 9.16 127.77 1.17 4.70 16 14 S 2.80 101.37 6.09 -56.49 -0.34 101.03 16 15 O -1.00 -38.48 16.68 -128.00 -2.14 -40.61 16 16 O -1.01 -41.64 16.70 -128.00 -2.14 -43.78 16 17 N -1.12 -32.03 6.05 -187.51 -1.14 -33.16 16 18 C 0.11 2.78 6.57 86.38 0.57 3.35 16 19 C 0.12 2.58 5.34 86.38 0.46 3.05 16 20 N -0.63 -13.40 3.01 -722.21 -2.17 -15.57 16 21 C 0.09 1.59 10.23 127.77 1.31 2.90 16 22 C 0.20 4.47 6.55 38.21 0.25 4.72 16 23 C -0.22 -4.88 9.20 22.40 0.21 -4.67 16 24 C -0.08 -1.67 10.04 22.25 0.22 -1.45 16 25 C -0.19 -3.41 10.04 22.29 0.22 -3.19 16 26 C -0.08 -1.41 10.04 22.25 0.22 -1.18 16 27 C -0.21 -4.14 9.21 22.40 0.21 -3.94 16 28 H 0.05 2.30 5.06 -2.39 -0.01 2.29 16 29 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 2.21 7.47 -2.38 -0.02 2.19 16 31 H 0.26 15.05 8.73 -92.71 -0.81 14.24 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 2.05 7.79 -2.39 -0.02 2.03 16 34 H 0.07 2.48 6.92 -2.39 -0.02 2.47 16 35 H 0.42 10.27 8.65 -96.74 -0.84 9.43 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.93 7.75 -2.38 -0.02 1.91 16 38 H 0.09 1.75 6.21 -2.38 -0.01 1.74 16 39 H 0.10 1.79 7.89 -2.39 -0.02 1.77 16 40 H 0.04 0.84 8.14 -2.38 -0.02 0.83 16 41 H 0.08 1.22 6.20 -2.39 -0.01 1.20 16 42 H 0.08 1.26 7.89 -2.39 -0.02 1.24 16 43 H 0.12 2.67 6.15 -2.91 -0.02 2.65 16 44 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 46 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 47 H 0.13 2.22 6.14 -2.91 -0.02 2.20 16 Total: -1.00 -67.40 384.61 -1.29 -68.69 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.05 Total: 28.87 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 6.22 Total: -20.38 kcal Atomic # 7 Polarization: -138.30 SS G_CDS: -4.64 Total: -142.94 kcal Atomic # 8 Polarization: -80.12 SS G_CDS: -4.27 Total: -84.39 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.80 Total: 49.11 kcal Atomic # 16 Polarization: 101.37 SS G_CDS: -0.34 Total: 101.03 kcal Total: -67.40 -1.29 -68.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282930083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.046 kcal (2) G-P(sol) polarization free energy of solvation -67.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds