Wall clock time and date at job start Wed Apr 1 2020 00:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46873 * 60.00018 * 8 6 4 10 10 H 1.48503 * 109.47134 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47271 * 299.99819 * 8 6 4 12 12 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 13 13 C 1.46501 * 119.99804 * 299.99290 * 12 2 1 14 14 S 1.65603 * 119.99958 * 120.00044 * 12 2 1 15 15 O 1.42099 * 106.40213 * 203.53550 * 14 12 2 16 16 O 1.42100 * 106.40190 * 336.45480 * 14 12 2 17 17 N 1.65600 * 107.21777 * 89.99594 * 14 12 2 18 18 C 1.47423 * 125.64740 * 269.68891 * 17 14 12 19 19 C 1.55133 * 104.72388 * 155.81881 * 18 17 14 20 20 C 1.55155 * 101.48323 * 37.29438 * 19 18 17 21 21 C 1.47023 * 125.64750 * 90.00006 * 17 14 12 22 22 H 1.08993 * 109.88176 * 300.43598 * 21 17 14 23 23 C 1.50700 * 109.88223 * 61.44924 * 21 17 14 24 24 C 1.34850 * 125.88728 * 354.69179 * 23 21 17 25 25 C 1.40896 * 107.41200 * 179.88299 * 24 23 21 26 26 C 1.34857 * 107.41825 * 0.37939 * 25 24 23 27 27 N 1.36339 * 108.21560 * 359.76492 * 26 25 24 28 28 C 1.46502 * 125.63344 * 180.02562 * 27 26 25 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 31 31 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 32 32 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.46601 * 90.00735 * 13 12 2 34 34 H 1.09001 * 109.47033 * 210.00059 * 13 12 2 35 35 H 1.08999 * 109.47288 * 330.00456 * 13 12 2 36 36 H 1.08994 * 110.37136 * 274.75017 * 18 17 14 37 37 H 1.09004 * 110.36937 * 37.07255 * 18 17 14 38 38 H 1.09003 * 111.19446 * 279.19560 * 19 18 17 39 39 H 1.08999 * 110.94296 * 155.28913 * 19 18 17 40 40 H 1.09000 * 110.72063 * 205.96793 * 20 19 18 41 41 H 1.09004 * 110.71718 * 82.69825 * 20 19 18 42 42 H 1.07991 * 126.29409 * 0.02562 * 24 23 21 43 43 H 1.08001 * 126.29260 * 180.11975 * 25 24 23 44 44 H 1.07994 * 125.89011 * 179.80311 * 26 25 24 45 45 H 1.08996 * 109.47210 * 269.98083 * 28 27 26 46 46 H 1.09001 * 109.46656 * 29.98268 * 28 27 26 47 47 H 1.09001 * 109.47189 * 149.97656 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5203 4.0076 12 7 2.0184 -0.6905 -1.1963 13 6 1.6645 -2.0931 -1.4281 14 16 2.9704 0.1144 -2.2863 15 8 2.8228 -0.5643 -3.5260 16 8 2.6903 1.4974 -2.1193 17 7 4.5438 -0.1040 -1.8181 18 6 5.2986 0.7744 -0.9060 19 6 6.4090 -0.1328 -0.3139 20 6 6.7785 -1.0088 -1.5400 21 6 5.4211 -1.2025 -2.2482 22 1 4.9858 -2.1593 -1.9599 23 6 5.6077 -1.1542 -3.7428 24 6 4.9833 -0.3116 -4.5906 25 6 5.4460 -0.6009 -5.8896 26 6 6.3291 -1.6149 -5.7871 27 7 6.4326 -1.9586 -4.4718 28 6 7.2890 -3.0172 -3.9310 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7095 1.1617 3.4844 33 1 0.7377 -2.1443 -1.9994 34 1 2.4629 -2.5818 -1.9865 35 1 1.5296 -2.5968 -0.4709 36 1 5.7383 1.6056 -1.4571 37 1 4.6494 1.1454 -0.1128 38 1 6.0244 -0.7449 0.5019 39 1 7.2627 0.4601 0.0142 40 1 7.1869 -1.9675 -1.2200 41 1 7.4813 -0.4866 -2.1893 42 1 4.2630 0.4471 -4.3228 43 1 5.1451 -0.1049 -6.8006 44 1 6.8629 -2.0748 -6.6055 45 1 6.7376 -3.9572 -3.9136 46 1 8.1729 -3.1259 -4.5596 47 1 7.5937 -2.7558 -2.9177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282953294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:42 Heat of formation + Delta-G solvation = -0.034949 kcal Electronic energy + Delta-G solvation = -30329.694054 eV Core-core repulsion = 26448.224145 eV Total energy + Delta-G solvation = -3881.469909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16383 -38.05856 -36.65070 -36.10202 -35.22470 -32.85782 -32.58581 -30.74868 -30.40097 -29.07237 -26.80963 -26.28365 -25.47348 -25.17940 -22.52503 -21.36147 -20.80701 -20.10199 -19.43014 -18.16388 -17.52598 -17.01403 -16.51997 -16.31100 -15.68507 -15.14886 -15.05464 -14.55966 -13.91441 -13.87453 -13.57831 -13.26379 -13.10137 -13.04214 -12.94937 -12.88863 -12.57752 -12.37981 -12.13275 -11.92769 -11.82826 -11.67623 -11.35235 -11.23204 -11.21284 -11.11741 -10.95547 -10.95129 -10.89896 -10.87325 -10.63230 -10.41493 -10.21268 -10.05308 -9.32361 -8.78218 -8.49300 -8.30439 -7.93569 -7.71336 -6.10175 -4.18971 1.22848 2.42125 3.01146 3.22960 3.29712 3.29833 3.35728 3.56299 4.15392 4.33593 4.52408 4.68234 4.70524 4.79795 5.04236 5.10002 5.16068 5.19977 5.26494 5.30012 5.39667 5.64765 5.65611 5.73093 5.83831 5.88144 5.96717 6.00043 6.03516 6.19680 6.31715 6.35850 6.41582 6.53107 6.58868 6.65386 6.75185 6.89143 6.92717 7.12907 7.27609 7.43574 7.51808 7.56140 7.62201 7.77957 8.04968 8.25771 8.83862 9.47139 10.94749 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.004555 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.442066 B = 6145.517821 C = 6950.967876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.057 0.943 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.990 5.990 13 C 0.109 3.891 14 S 2.785 3.215 15 O -0.974 6.974 16 O -0.977 6.977 17 N -1.004 6.004 18 C 0.124 3.876 19 C -0.127 4.127 20 C -0.124 4.124 21 C 0.230 3.770 22 H 0.077 0.923 23 C -0.008 4.008 24 C -0.146 4.146 25 C -0.201 4.201 26 C -0.021 4.021 27 N -0.447 5.447 28 C 0.068 3.932 29 H 0.032 0.968 30 H 0.092 0.908 31 H 0.012 0.988 32 H 0.264 0.736 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.157 0.843 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.271 -6.596 -9.180 17.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.832 5.832 13 C -0.038 4.038 14 S 2.797 3.203 15 O -0.958 6.958 16 O -0.962 6.962 17 N -0.841 5.841 18 C -0.001 4.001 19 C -0.166 4.166 20 C -0.163 4.163 21 C 0.122 3.878 22 H 0.095 0.905 23 C -0.120 4.120 24 C -0.171 4.171 25 C -0.226 4.226 26 C -0.151 4.151 27 N -0.124 5.124 28 C -0.074 4.074 29 H 0.051 0.949 30 H 0.111 0.889 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.141 0.859 43 H 0.149 0.851 44 H 0.175 0.825 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.990 -6.216 -9.665 17.343 hybrid contribution 0.290 -0.825 1.120 1.420 sum 13.279 -7.041 -8.546 17.290 Atomic orbital electron populations 1.22054 0.97987 0.99646 1.00740 1.18725 0.91899 0.92655 0.80335 0.92524 1.21322 1.31897 1.13087 0.90135 0.92023 1.24914 0.94967 0.94960 0.98907 1.69871 1.36121 1.22542 1.23902 0.86611 0.79115 0.79690 0.82236 1.20265 1.21260 1.20335 1.57817 1.63913 1.21424 1.40027 1.21154 0.98885 0.82091 1.01623 1.01860 0.71638 0.73628 0.73222 1.93671 1.85494 1.76190 1.40472 1.93587 1.83440 1.32223 1.86905 1.59144 1.28483 1.35838 1.60589 1.21980 0.93741 0.92169 0.92215 1.22808 0.98321 0.98152 0.97296 1.22765 0.95650 1.00623 0.97299 1.19327 0.91227 0.90511 0.86776 0.90499 1.20504 0.99827 0.97800 0.93828 1.20671 1.01365 1.02421 0.92645 1.20841 1.02495 1.01550 0.97748 1.21643 1.05937 1.02299 0.85172 1.43611 1.34370 1.28036 1.06407 1.22089 0.94323 0.90085 1.00938 0.94890 0.88902 0.96918 0.92570 0.93900 0.93427 0.90340 0.91857 0.89398 0.89865 0.90269 0.90462 0.90608 0.85871 0.85060 0.82518 0.91248 0.90222 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 8.97 37.16 0.33 -3.16 16 2 C 0.27 6.56 2.62 -69.08 -0.18 6.37 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.52 -13.24 7.99 -34.45 -0.28 -13.51 16 5 H 0.06 1.51 7.33 -52.49 -0.38 1.12 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.05 11.32 55.43 0.63 -23.42 16 8 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.99 -21.12 3.12 -115.85 -0.36 -21.48 16 13 C 0.11 2.02 9.28 59.85 0.56 2.57 16 14 S 2.79 57.71 5.24 -107.50 -0.56 57.15 16 15 O -0.97 -20.69 12.72 -57.17 -0.73 -21.41 16 16 O -0.98 -23.27 16.28 -57.17 -0.93 -24.20 16 17 N -1.00 -17.36 3.16 -105.51 -0.33 -17.69 16 18 C 0.12 1.94 6.99 -2.41 -0.02 1.92 16 19 C -0.13 -1.54 7.10 -24.46 -0.17 -1.71 16 20 C -0.12 -1.38 4.98 -24.89 -0.12 -1.51 16 21 C 0.23 3.36 3.31 -68.10 -0.23 3.14 16 22 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 23 C -0.01 -0.12 5.74 -81.79 -0.47 -0.59 16 24 C -0.15 -2.61 8.04 -39.78 -0.32 -2.93 16 25 C -0.20 -3.09 10.86 -39.78 -0.43 -3.52 16 26 C -0.02 -0.27 11.43 -16.75 -0.19 -0.46 16 27 N -0.45 -5.68 3.15 -119.90 -0.38 -6.06 16 28 C 0.07 0.55 10.87 59.85 0.65 1.20 16 29 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 30 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 31 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.78 7.79 -51.93 -0.40 0.38 16 35 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 0.67 7.10 -51.93 -0.37 0.30 16 41 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 42 H 0.12 2.43 5.28 -52.49 -0.28 2.16 16 43 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.08 0.60 5.31 -51.93 -0.28 0.32 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -32.33 375.37 -10.34 -42.66 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.34 Total: 4.50 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -0.96 Total: -10.62 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -0.44 Total: -68.66 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -1.66 Total: -45.62 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 57.71 SS G_CDS: -0.56 Total: 57.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.33 -10.34 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282953294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.629 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds