Wall clock time and date at job start Wed Apr 1 2020 00:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46873 * 60.00018 * 8 6 4 10 10 H 1.48503 * 109.47134 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47271 * 299.99819 * 8 6 4 12 12 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 13 13 C 1.46501 * 119.99804 * 299.99290 * 12 2 1 14 14 S 1.65603 * 119.99958 * 120.00044 * 12 2 1 15 15 O 1.42099 * 106.40213 * 203.53550 * 14 12 2 16 16 O 1.42100 * 106.40190 * 336.45480 * 14 12 2 17 17 N 1.65600 * 107.21777 * 89.99594 * 14 12 2 18 18 C 1.47423 * 125.64740 * 269.68891 * 17 14 12 19 19 C 1.55133 * 104.72388 * 155.81881 * 18 17 14 20 20 C 1.55155 * 101.48323 * 37.29438 * 19 18 17 21 21 C 1.47023 * 125.64750 * 90.00006 * 17 14 12 22 22 H 1.08993 * 109.88176 * 300.43598 * 21 17 14 23 23 C 1.50700 * 109.88223 * 61.44924 * 21 17 14 24 24 C 1.34850 * 125.88728 * 354.69179 * 23 21 17 25 25 C 1.40896 * 107.41200 * 179.88299 * 24 23 21 26 26 C 1.34857 * 107.41825 * 0.37939 * 25 24 23 27 27 N 1.36339 * 108.21560 * 359.76492 * 26 25 24 28 28 C 1.46502 * 125.63344 * 180.02562 * 27 26 25 29 29 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 31 31 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 32 32 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 33 33 H 1.08999 * 109.46601 * 90.00735 * 13 12 2 34 34 H 1.09001 * 109.47033 * 210.00059 * 13 12 2 35 35 H 1.08999 * 109.47288 * 330.00456 * 13 12 2 36 36 H 1.08994 * 110.37136 * 274.75017 * 18 17 14 37 37 H 1.09004 * 110.36937 * 37.07255 * 18 17 14 38 38 H 1.09003 * 111.19446 * 279.19560 * 19 18 17 39 39 H 1.08999 * 110.94296 * 155.28913 * 19 18 17 40 40 H 1.09000 * 110.72063 * 205.96793 * 20 19 18 41 41 H 1.09004 * 110.71718 * 82.69825 * 20 19 18 42 42 H 1.07991 * 126.29409 * 0.02562 * 24 23 21 43 43 H 1.08001 * 126.29260 * 180.11975 * 25 24 23 44 44 H 1.07994 * 125.89011 * 179.80311 * 26 25 24 45 45 H 1.08996 * 109.47210 * 269.98083 * 28 27 26 46 46 H 1.09001 * 109.46656 * 29.98268 * 28 27 26 47 47 H 1.09001 * 109.47189 * 149.97656 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.8065 -1.1209 4.0080 10 1 1.8271 -0.4201 5.2204 11 1 1.8260 -2.5203 4.0076 12 7 2.0184 -0.6905 -1.1963 13 6 1.6645 -2.0931 -1.4281 14 16 2.9704 0.1144 -2.2863 15 8 2.8228 -0.5643 -3.5260 16 8 2.6903 1.4974 -2.1193 17 7 4.5438 -0.1040 -1.8181 18 6 5.2986 0.7744 -0.9060 19 6 6.4090 -0.1328 -0.3139 20 6 6.7785 -1.0088 -1.5400 21 6 5.4211 -1.2025 -2.2482 22 1 4.9858 -2.1593 -1.9599 23 6 5.6077 -1.1542 -3.7428 24 6 4.9833 -0.3116 -4.5906 25 6 5.4460 -0.6009 -5.8896 26 6 6.3291 -1.6149 -5.7871 27 7 6.4326 -1.9586 -4.4718 28 6 7.2890 -3.0172 -3.9310 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.7095 1.1617 3.4844 33 1 0.7377 -2.1443 -1.9994 34 1 2.4629 -2.5818 -1.9865 35 1 1.5296 -2.5968 -0.4709 36 1 5.7383 1.6056 -1.4571 37 1 4.6494 1.1454 -0.1128 38 1 6.0244 -0.7449 0.5019 39 1 7.2627 0.4601 0.0142 40 1 7.1869 -1.9675 -1.2200 41 1 7.4813 -0.4866 -2.1893 42 1 4.2630 0.4471 -4.3228 43 1 5.1451 -0.1049 -6.8006 44 1 6.8629 -2.0748 -6.6055 45 1 6.7376 -3.9572 -3.9136 46 1 8.1729 -3.1259 -4.5596 47 1 7.5937 -2.7558 -2.9177 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282953294.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:41 Heat of formation + Delta-G solvation = -20.791223 kcal Electronic energy + Delta-G solvation = -30330.594114 eV Core-core repulsion = 26448.224145 eV Total energy + Delta-G solvation = -3882.369968 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.21390 -39.20552 -38.37855 -37.89986 -36.95316 -34.51777 -33.76539 -31.86170 -31.55965 -30.95688 -27.89853 -27.27597 -27.13440 -26.98616 -23.75081 -22.62631 -22.36254 -21.28848 -20.62444 -19.48089 -19.02560 -18.48945 -18.37353 -17.68753 -17.18624 -16.64170 -16.12930 -15.99299 -15.32853 -15.13575 -14.94219 -14.79901 -14.50603 -14.28977 -14.22170 -13.92680 -13.85187 -13.60334 -13.49375 -13.46301 -13.18676 -13.07380 -13.03227 -12.88203 -12.78077 -12.66758 -12.51633 -12.41638 -12.20435 -12.15157 -12.12358 -11.95972 -11.85254 -11.61323 -11.22582 -10.48503 -10.15032 -9.68459 -9.35808 -8.81908 -8.07276 -6.23225 -0.38378 1.37687 1.48401 1.49482 1.57112 1.90674 2.17012 2.18893 2.47336 2.61168 3.20759 3.23606 3.57264 3.69101 3.93565 4.00035 4.09290 4.20700 4.27286 4.38205 4.52747 4.57105 4.63446 4.71063 4.72413 4.75757 4.78446 4.83950 4.89399 4.91989 4.94675 4.96613 5.01297 5.10464 5.15818 5.21081 5.28357 5.42329 5.47927 5.50769 5.60359 5.71048 5.85080 6.08621 6.11619 6.27989 6.33662 6.63482 6.85186 7.46567 8.97487 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.004555 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.442066 B = 6145.517821 C = 6950.967876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 H 0.019 0.981 4 C -0.527 4.527 5 H 0.070 0.930 6 C 0.017 3.983 7 N -0.920 5.920 8 Si 0.961 3.039 9 H -0.265 1.265 10 H -0.291 1.291 11 H -0.270 1.270 12 N -0.997 5.997 13 C 0.105 3.895 14 S 2.797 3.203 15 O -0.983 6.983 16 O -1.020 7.020 17 N -1.004 6.004 18 C 0.113 3.887 19 C -0.116 4.116 20 C -0.110 4.110 21 C 0.220 3.780 22 H 0.084 0.916 23 C -0.012 4.012 24 C -0.194 4.194 25 C -0.237 4.237 26 C -0.001 4.001 27 N -0.440 5.440 28 C 0.057 3.943 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.135 0.865 44 H 0.199 0.801 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.593 -9.859 -8.980 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.037 0.963 4 C -0.566 4.566 5 H 0.089 0.911 6 C -0.183 4.183 7 N -0.559 5.559 8 Si 0.786 3.214 9 H -0.190 1.190 10 H -0.217 1.217 11 H -0.195 1.195 12 N -0.838 5.838 13 C -0.041 4.041 14 S 2.809 3.191 15 O -0.966 6.966 16 O -1.005 7.005 17 N -0.844 5.844 18 C -0.012 4.012 19 C -0.155 4.155 20 C -0.149 4.149 21 C 0.113 3.887 22 H 0.102 0.898 23 C -0.125 4.125 24 C -0.219 4.219 25 C -0.262 4.262 26 C -0.131 4.131 27 N -0.117 5.117 28 C -0.083 4.083 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.153 0.847 44 H 0.216 0.784 45 H 0.099 0.901 46 H 0.127 0.873 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.320 -9.515 -9.483 21.138 hybrid contribution -0.712 0.200 0.954 1.207 sum 15.608 -9.316 -8.529 20.078 Atomic orbital electron populations 1.21957 0.98046 1.00058 0.99807 1.18413 0.91860 0.91218 0.81679 0.96332 1.21520 1.31685 1.13095 0.90332 0.91146 1.25716 0.95096 0.95544 1.01903 1.70023 1.37398 1.24057 1.24413 0.85570 0.79070 0.78554 0.78182 1.18982 1.21715 1.19529 1.57739 1.64724 1.22485 1.38868 1.21323 1.00065 0.80565 1.02113 1.01226 0.72350 0.72590 0.72906 1.93659 1.86108 1.76055 1.40804 1.93518 1.84615 1.34921 1.87412 1.58817 1.27589 1.37140 1.60838 1.22167 0.94317 0.93254 0.91454 1.22790 0.97595 0.97731 0.97397 1.22786 0.93550 1.02386 0.96146 1.19686 0.92657 0.89549 0.86814 0.89850 1.20500 1.00068 0.97894 0.94079 1.20657 1.02783 1.03628 0.94836 1.21063 1.04407 1.03574 0.97149 1.22194 1.04191 1.00550 0.86196 1.43906 1.33682 1.27956 1.06114 1.22495 0.94697 0.88861 1.02262 0.93647 0.90952 0.96733 0.92737 0.93290 0.91295 0.90175 0.91384 0.92376 0.90313 0.87406 0.86669 0.89762 0.89290 0.84725 0.78373 0.90126 0.87262 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.94 8.97 71.98 0.65 -6.30 16 2 C 0.27 13.86 2.62 44.25 0.12 13.98 16 3 H 0.02 1.09 6.91 -2.39 -0.02 1.08 16 4 C -0.53 -26.75 7.99 25.60 0.20 -26.54 16 5 H 0.07 3.38 7.33 -2.91 -0.02 3.36 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -51.20 11.32 21.44 0.24 -50.96 16 8 Si 0.96 40.43 29.54 68.60 2.03 42.45 16 9 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 10 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 12 N -1.00 -43.54 3.12 -520.43 -1.62 -45.16 16 13 C 0.10 3.82 9.28 127.77 1.19 5.01 16 14 S 2.80 121.25 5.24 -56.49 -0.30 120.96 16 15 O -0.98 -43.31 12.72 -128.00 -1.63 -44.94 16 16 O -1.02 -52.25 16.28 -128.00 -2.08 -54.34 16 17 N -1.00 -35.20 3.16 -487.71 -1.54 -36.74 16 18 C 0.11 3.58 6.99 86.93 0.61 4.18 16 19 C -0.12 -2.53 7.10 32.06 0.23 -2.30 16 20 C -0.11 -2.03 4.98 31.78 0.16 -1.87 16 21 C 0.22 6.04 3.31 44.60 0.15 6.19 16 22 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 23 C -0.01 -0.36 5.74 41.08 0.24 -0.13 16 24 C -0.19 -7.08 8.04 22.14 0.18 -6.90 16 25 C -0.24 -7.25 10.86 22.14 0.24 -7.01 16 26 C 0.00 -0.02 11.43 83.22 0.95 0.93 16 27 N -0.44 -9.73 3.15 -533.25 -1.68 -11.41 16 28 C 0.06 0.63 10.87 127.77 1.39 2.02 16 29 H 0.04 2.08 7.67 -2.39 -0.02 2.07 16 30 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 31 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.19 7.79 -2.39 -0.02 2.17 16 35 H 0.08 2.88 7.02 -2.39 -0.02 2.86 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.12 1.32 7.10 -2.39 -0.02 1.30 16 41 H 0.08 1.47 7.85 -2.39 -0.02 1.45 16 42 H 0.09 3.78 5.28 -2.92 -0.02 3.77 16 43 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 44 H 0.20 2.71 8.06 -2.91 -0.02 2.68 16 45 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.10 0.83 5.31 -2.39 -0.01 0.82 16 Total: -1.00 -74.52 375.37 1.11 -73.41 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.96 Total: 24.13 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 6.74 Total: -17.40 kcal Atomic # 7 Polarization: -139.67 SS G_CDS: -4.60 Total: -144.27 kcal Atomic # 8 Polarization: -95.57 SS G_CDS: -3.71 Total: -99.28 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 16 Polarization: 121.25 SS G_CDS: -0.30 Total: 120.96 kcal Total: -74.52 1.11 -73.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282953294.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.618 kcal (2) G-P(sol) polarization free energy of solvation -74.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds