Wall clock time and date at job start Wed Apr 1 2020 00:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46885 * 2 1 4 4 C 1.50701 * 109.46963 * 120.00417 * 2 1 3 5 5 H 1.07999 * 119.99620 * 120.00751 * 4 2 1 6 6 C 1.37872 * 120.00075 * 299.99517 * 4 2 1 7 7 N 1.31517 * 120.00294 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99931 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.46843 * 89.99576 * 8 6 4 10 10 H 1.48500 * 109.47187 * 209.99428 * 8 6 4 11 11 H 1.48497 * 109.47141 * 329.99577 * 8 6 4 12 12 N 1.46498 * 109.46970 * 240.00479 * 2 1 3 13 13 C 1.46503 * 120.00105 * 296.12173 * 12 2 1 14 14 S 1.65603 * 120.00068 * 116.12565 * 12 2 1 15 15 O 1.42101 * 106.40165 * 161.74112 * 14 12 2 16 16 O 1.42100 * 106.40181 * 28.82419 * 14 12 2 17 17 N 1.65596 * 107.21962 * 275.28515 * 14 12 2 18 18 C 1.47421 * 125.64929 * 82.48192 * 17 14 12 19 19 C 1.54909 * 104.83501 * 204.15179 * 18 17 14 20 20 C 1.55163 * 101.57892 * 322.99195 * 19 18 17 21 21 C 1.47020 * 125.64539 * 262.51136 * 17 14 12 22 22 H 1.08997 * 110.01487 * 59.42860 * 21 17 14 23 23 C 1.50697 * 109.88237 * 298.33325 * 21 17 14 24 24 C 1.34850 * 125.89121 * 0.06788 * 23 21 17 25 25 C 1.40888 * 107.41623 * 180.02562 * 24 23 21 26 26 C 1.34853 * 107.41989 * 359.97438 * 25 24 23 27 27 N 1.36342 * 108.21596 * 0.26880 * 26 25 24 28 28 C 1.46505 * 125.63301 * 179.73400 * 27 26 25 29 29 H 1.09001 * 109.47414 * 66.65427 * 1 2 3 30 30 H 1.09005 * 109.47153 * 186.64769 * 1 2 3 31 31 H 1.08994 * 109.47246 * 306.64704 * 1 2 3 32 32 H 0.97000 * 120.00262 * 180.02562 * 7 6 4 33 33 H 1.09000 * 109.47275 * 270.00256 * 13 12 2 34 34 H 1.09002 * 109.46990 * 30.00540 * 13 12 2 35 35 H 1.09002 * 109.47277 * 150.00051 * 13 12 2 36 36 H 1.09002 * 110.36652 * 85.31531 * 18 17 14 37 37 H 1.09005 * 110.36543 * 322.99235 * 18 17 14 38 38 H 1.08993 * 111.00664 * 204.92121 * 19 18 17 39 39 H 1.09002 * 111.03661 * 81.07775 * 19 18 17 40 40 H 1.08995 * 110.72149 * 277.13811 * 20 19 18 41 41 H 1.09002 * 110.87150 * 153.93497 * 20 19 18 42 42 H 1.07999 * 126.29275 * 359.97438 * 24 23 21 43 43 H 1.08008 * 126.29197 * 179.97438 * 25 24 23 44 44 H 1.07997 * 125.88698 * 180.02562 * 26 25 24 45 45 H 1.08998 * 109.46707 * 90.02263 * 28 27 26 46 46 H 1.08995 * 109.46647 * 210.02166 * 28 27 26 47 47 H 1.08997 * 109.47009 * 330.02275 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1380 -0.8592 3.5565 8 14 0.6248 1.2790 2.6542 9 1 -0.8028 0.8726 2.6997 10 1 0.9759 1.9949 3.9069 11 1 0.8472 2.1765 1.4922 12 7 2.0183 -0.6905 -1.1962 13 6 1.7358 -2.1154 -1.3861 14 16 2.8897 0.1396 -2.3338 15 8 3.5673 -0.8375 -3.1119 16 8 3.5603 1.1841 -1.6420 17 7 1.8026 0.8718 -3.3458 18 6 1.1170 2.1515 -3.0895 19 6 -0.1735 2.0883 -3.9440 20 6 0.3296 1.3523 -5.2139 21 6 1.3609 0.3530 -4.6486 22 1 0.8981 -0.6258 -4.5229 23 6 2.5377 0.2470 -5.5838 24 6 3.8130 0.5724 -5.2898 25 6 4.5876 0.3232 -6.4400 26 6 3.7564 -0.1454 -7.3928 27 7 2.4959 -0.1891 -6.8750 28 6 1.2955 -0.6343 -7.5872 29 1 -0.3634 0.4072 -0.9435 30 1 -0.3634 -1.0208 0.1190 31 1 -0.3633 0.6134 0.8245 32 1 1.9034 -0.5281 4.4375 33 1 2.5356 -2.7070 -0.9406 34 1 0.7891 -2.3651 -0.9070 35 1 1.6724 -2.3344 -2.4520 36 1 1.7415 2.9867 -3.4068 37 1 0.8679 2.2433 -2.0323 38 1 -0.5301 3.0889 -4.1879 39 1 -0.9488 1.5116 -3.4396 40 1 0.8064 2.0511 -5.9012 41 1 -0.4875 0.8257 -5.7070 42 1 4.1739 0.9545 -4.3464 43 1 5.6517 0.4790 -6.5401 44 1 4.0397 -0.4325 -8.3947 45 1 1.1633 -1.7064 -7.4413 46 1 0.4255 -0.1047 -7.1991 47 1 1.4048 -0.4231 -8.6509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282953301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:44 Heat of formation + Delta-G solvation = -21.973270 kcal Electronic energy + Delta-G solvation = -30241.044114 eV Core-core repulsion = 26358.622889 eV Total energy + Delta-G solvation = -3882.421226 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.24599 -39.26352 -38.43804 -38.09012 -36.95577 -34.55922 -33.78960 -31.89187 -31.84898 -31.62159 -27.94452 -27.30314 -27.12487 -27.03521 -23.79550 -22.69037 -22.34512 -21.34622 -20.64997 -19.57095 -19.13073 -18.94221 -18.25374 -17.73874 -17.32161 -16.76480 -16.23500 -16.03208 -15.49005 -15.23920 -14.94382 -14.87969 -14.50448 -14.44381 -14.29545 -14.13419 -13.92992 -13.80364 -13.67258 -13.52236 -13.42142 -13.15830 -13.09141 -13.05544 -12.90192 -12.79640 -12.70201 -12.55223 -12.23159 -12.16974 -12.06032 -11.99591 -11.59688 -11.46428 -11.33728 -10.78781 -10.21886 -9.81349 -9.43288 -8.86763 -8.31421 -6.37429 -0.50713 1.28867 1.33554 1.38477 1.46611 1.90146 2.09152 2.13158 2.31126 2.56091 3.02904 3.16589 3.56222 3.66429 3.90047 3.90592 4.06147 4.16875 4.24156 4.35115 4.40335 4.52988 4.56320 4.58210 4.59383 4.65963 4.68049 4.75787 4.77103 4.80789 4.83082 4.92066 4.96593 5.02572 5.05145 5.11383 5.17009 5.27156 5.41201 5.41885 5.44741 5.52737 5.57873 5.85218 6.05034 6.28315 6.32008 6.59480 6.66511 7.27225 8.85502 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.004154 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.288259 B = 6739.667517 C = 7260.700670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.241 3.759 3 H 0.037 0.963 4 C -0.530 4.530 5 H 0.037 0.963 6 C 0.015 3.985 7 N -0.945 5.945 8 Si 0.941 3.059 9 H -0.247 1.247 10 H -0.298 1.298 11 H -0.247 1.247 12 N -0.992 5.992 13 C 0.109 3.891 14 S 2.798 3.202 15 O -0.986 6.986 16 O -1.018 7.018 17 N -1.005 6.005 18 C 0.103 3.897 19 C -0.114 4.114 20 C -0.111 4.111 21 C 0.219 3.781 22 H 0.093 0.907 23 C 0.000 4.000 24 C -0.209 4.209 25 C -0.235 4.235 26 C -0.001 4.001 27 N -0.440 5.440 28 C 0.058 3.942 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.268 0.732 33 H 0.029 0.971 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.078 0.922 43 H 0.134 0.866 44 H 0.200 0.800 45 H 0.080 0.920 46 H 0.102 0.898 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.671 4.191 -26.428 29.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.135 3.865 3 H 0.055 0.945 4 C -0.569 4.569 5 H 0.055 0.945 6 C -0.183 4.183 7 N -0.585 5.585 8 Si 0.766 3.234 9 H -0.171 1.171 10 H -0.226 1.226 11 H -0.171 1.171 12 N -0.833 5.833 13 C -0.036 4.036 14 S 2.810 3.190 15 O -0.970 6.970 16 O -1.002 7.002 17 N -0.845 5.845 18 C -0.022 4.022 19 C -0.153 4.153 20 C -0.150 4.150 21 C 0.112 3.888 22 H 0.110 0.890 23 C -0.114 4.114 24 C -0.235 4.235 25 C -0.259 4.259 26 C -0.132 4.132 27 N -0.116 5.116 28 C -0.082 4.082 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.137 0.863 42 H 0.096 0.904 43 H 0.152 0.848 44 H 0.217 0.783 45 H 0.099 0.901 46 H 0.121 0.879 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.962 4.047 -26.430 28.898 hybrid contribution 0.607 0.239 1.422 1.564 sum -10.356 4.286 -25.008 27.404 Atomic orbital electron populations 1.22372 0.95724 1.02414 1.00967 1.18874 0.92810 0.92036 0.82738 0.94535 1.21421 1.31744 1.13154 0.90578 0.94450 1.25818 0.97384 1.00018 0.95101 1.70038 1.47294 1.42465 0.98662 0.85993 0.79957 0.79755 0.77663 1.17136 1.22603 1.17115 1.57524 1.73320 1.19105 1.33335 1.21282 1.01933 0.79334 1.01062 1.01213 0.73414 0.72547 0.71807 1.93601 1.71709 1.61467 1.70245 1.93531 1.72545 1.59304 1.74830 1.58877 1.62607 1.33477 1.29557 1.22310 0.94749 0.84099 1.01010 1.22796 0.95022 1.03078 0.94380 1.22788 0.97056 0.97153 0.97975 1.19793 0.90245 0.99460 0.79341 0.88957 1.20577 0.96337 1.07271 0.87226 1.20379 0.94444 1.10461 0.98175 1.21046 0.99894 1.10506 0.94472 1.22187 0.82895 1.07421 1.00677 1.43933 1.08760 1.49657 1.09209 1.22488 0.85204 1.01738 0.98747 0.90454 0.91597 0.93746 0.92327 0.95204 0.89684 0.90056 0.91607 0.91292 0.87281 0.88906 0.90272 0.86269 0.90395 0.84828 0.78349 0.90149 0.87935 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.82 8.50 71.98 0.61 -5.21 16 2 C 0.24 11.27 2.22 44.25 0.10 11.37 16 3 H 0.04 1.83 6.06 -2.39 -0.01 1.82 16 4 C -0.53 -30.57 8.90 25.60 0.23 -30.34 16 5 H 0.04 2.41 7.67 -2.91 -0.02 2.39 16 6 C 0.01 0.87 5.45 84.65 0.46 1.33 16 7 N -0.94 -59.32 13.96 21.45 0.30 -59.02 16 8 Si 0.94 43.54 24.30 68.60 1.67 45.20 16 9 H -0.25 -10.19 6.93 99.48 0.69 -9.50 16 10 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 11 H -0.25 -10.64 6.53 99.48 0.65 -9.99 16 12 N -0.99 -41.57 3.12 -520.43 -1.62 -43.19 16 13 C 0.11 3.99 9.38 127.77 1.20 5.19 16 14 S 2.80 116.17 4.91 -56.49 -0.28 115.89 16 15 O -0.99 -43.45 13.57 -128.00 -1.74 -45.18 16 16 O -1.02 -50.98 16.53 -128.00 -2.12 -53.10 16 17 N -1.00 -30.01 3.09 -488.13 -1.51 -31.52 16 18 C 0.10 2.50 7.06 86.86 0.61 3.11 16 19 C -0.11 -1.54 7.09 31.99 0.23 -1.31 16 20 C -0.11 -1.42 5.27 31.79 0.17 -1.25 16 21 C 0.22 4.95 3.17 44.60 0.14 5.09 16 22 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 23 C 0.00 -0.01 5.54 41.08 0.23 0.22 16 24 C -0.21 -7.35 8.17 22.14 0.18 -7.16 16 25 C -0.23 -6.99 10.86 22.14 0.24 -6.75 16 26 C 0.00 -0.03 11.43 83.21 0.95 0.92 16 27 N -0.44 -8.85 3.15 -533.25 -1.68 -10.53 16 28 C 0.06 0.50 10.89 127.77 1.39 1.89 16 29 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 2.38 7.07 -2.38 -0.02 2.37 16 31 H 0.04 1.69 3.48 -2.39 -0.01 1.68 16 32 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 33 H 0.03 1.19 8.04 -2.39 -0.02 1.17 16 34 H 0.08 2.84 6.77 -2.39 -0.02 2.82 16 35 H 0.08 2.43 7.65 -2.39 -0.02 2.41 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.06 7.84 -2.39 -0.02 1.04 16 41 H 0.12 0.65 7.16 -2.39 -0.02 0.64 16 42 H 0.08 3.21 6.04 -2.91 -0.02 3.19 16 43 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 44 H 0.20 2.54 8.06 -2.91 -0.02 2.51 16 45 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.10 0.50 5.66 -2.39 -0.01 0.49 16 47 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -86.32 370.12 0.65 -85.67 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.89 Total: 18.67 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 6.74 Total: -22.90 kcal Atomic # 7 Polarization: -139.75 SS G_CDS: -4.51 Total: -144.26 kcal Atomic # 8 Polarization: -94.43 SS G_CDS: -3.85 Total: -98.28 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.67 Total: 45.20 kcal Atomic # 16 Polarization: 116.17 SS G_CDS: -0.28 Total: 115.89 kcal Total: -86.32 0.65 -85.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282953301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.693 kcal (2) G-P(sol) polarization free energy of solvation -86.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds