Wall clock time and date at job start Wed Apr 1 2020 00:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46919 * 2 1 4 4 C 1.50697 * 109.47024 * 239.99711 * 2 1 3 5 5 H 1.08007 * 119.99678 * 239.99904 * 4 2 1 6 6 C 1.37869 * 120.00316 * 59.99971 * 4 2 1 7 7 N 1.31519 * 120.00174 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00321 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47232 * 89.99919 * 8 6 4 10 10 H 1.48493 * 109.47666 * 210.00097 * 8 6 4 11 11 H 1.48504 * 109.47080 * 330.00099 * 8 6 4 12 12 N 1.46502 * 109.46992 * 119.99528 * 2 1 3 13 13 C 1.46495 * 120.00119 * 59.99937 * 12 2 1 14 14 S 1.65606 * 119.99879 * 240.00067 * 12 2 1 15 15 O 1.42102 * 106.39986 * 198.54542 * 14 12 2 16 16 O 1.42096 * 106.39832 * 331.46765 * 14 12 2 17 17 N 1.65602 * 107.21552 * 85.00627 * 14 12 2 18 18 C 1.47424 * 125.65071 * 82.58744 * 17 14 12 19 19 C 1.54690 * 104.94008 * 204.07070 * 18 17 14 20 20 C 1.55151 * 101.67867 * 323.27423 * 19 18 17 21 21 C 1.47024 * 125.64616 * 262.89258 * 17 14 12 22 22 H 1.08999 * 109.88195 * 59.48628 * 21 17 14 23 23 C 1.50704 * 109.88098 * 298.32404 * 21 17 14 24 24 C 1.34844 * 125.89165 * 0.35087 * 23 21 17 25 25 C 1.40892 * 107.41816 * 179.89019 * 24 23 21 26 26 C 1.34852 * 107.41709 * 0.37441 * 25 24 23 27 27 N 1.36345 * 125.88709 * 180.66173 * 23 21 17 28 28 C 1.46500 * 125.63984 * 359.95205 * 27 23 21 29 29 H 1.09006 * 109.47356 * 300.00160 * 1 2 3 30 30 H 1.08995 * 109.47272 * 60.00625 * 1 2 3 31 31 H 1.09000 * 109.47026 * 180.02562 * 1 2 3 32 32 H 0.96992 * 120.00536 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.47154 * 95.14994 * 13 12 2 34 34 H 1.08997 * 109.47390 * 215.14620 * 13 12 2 35 35 H 1.09004 * 109.47178 * 335.15068 * 13 12 2 36 36 H 1.09001 * 110.36308 * 322.99943 * 18 17 14 37 37 H 1.08995 * 110.36723 * 85.31967 * 18 17 14 38 38 H 1.09007 * 111.09560 * 205.10608 * 19 18 17 39 39 H 1.09000 * 110.84758 * 81.33879 * 19 18 17 40 40 H 1.09000 * 110.72448 * 276.97433 * 20 19 18 41 41 H 1.09001 * 110.87270 * 153.77125 * 20 19 18 42 42 H 1.08006 * 126.29375 * 0.02562 * 24 23 21 43 43 H 1.08003 * 126.29383 * 180.13138 * 25 24 23 44 44 H 1.07999 * 125.89187 * 179.74319 * 26 25 24 45 45 H 1.09007 * 109.46726 * 90.00360 * 28 27 23 46 46 H 1.08992 * 109.47067 * 209.99891 * 28 27 23 47 47 H 1.08996 * 109.47150 * 330.00882 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3225 -1.1198 -4.0078 9 1 1.3448 -2.1619 -4.4122 10 1 2.4873 -0.1407 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 7 2.0184 -0.6905 1.1963 13 6 1.6644 -2.0930 1.4282 14 16 2.9704 0.1144 2.2863 15 8 3.6236 -0.8818 3.0610 16 8 3.6693 1.1093 1.5507 17 7 1.9582 0.9212 3.3192 18 6 1.2890 0.3382 4.4964 19 6 0.0490 1.2320 4.7335 20 6 0.5997 2.6361 4.3699 21 6 1.5732 2.3359 3.2106 22 1 1.0785 2.5132 2.2557 23 6 2.7952 3.2101 3.3281 24 6 4.0615 2.7797 3.4997 25 6 4.8898 3.9181 3.5563 26 6 4.0970 5.0011 3.4255 27 7 2.8101 4.5728 3.2851 28 6 1.6375 5.4345 3.1155 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7081 1.1606 -3.4844 33 1 2.4608 -2.7356 1.0526 34 1 1.5343 -2.2630 2.4970 35 1 0.7350 -2.3241 0.9077 36 1 0.9839 -0.6877 4.2898 37 1 1.9491 0.3713 5.3631 38 1 -0.2681 1.1945 5.7758 39 1 -0.7668 0.9480 4.0687 40 1 1.1304 3.0732 5.2157 41 1 -0.2033 3.2944 4.0384 42 1 4.3823 1.7513 3.5770 43 1 5.9621 3.9227 3.6851 44 1 4.4247 6.0301 3.4315 45 1 1.2239 5.6817 4.0933 46 1 1.9309 6.3505 2.6030 47 1 0.8853 4.9122 2.5244 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282953308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:47 Heat of formation + Delta-G solvation = -4.907166 kcal Electronic energy + Delta-G solvation = -30343.578015 eV Core-core repulsion = 26461.896831 eV Total energy + Delta-G solvation = -3881.681184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10222 -38.17331 -36.58051 -36.13511 -35.13870 -32.75481 -32.55497 -30.85586 -30.48335 -29.07487 -26.85964 -26.22059 -25.54640 -25.11789 -22.60929 -21.41834 -20.77724 -20.11943 -19.37110 -18.17667 -17.51305 -17.10654 -16.48233 -16.22961 -15.67447 -15.13711 -15.08185 -14.50072 -13.91420 -13.89408 -13.52799 -13.36786 -13.13231 -13.07159 -12.89918 -12.84503 -12.63256 -12.36196 -12.04606 -11.89935 -11.83048 -11.57089 -11.36540 -11.32899 -11.29576 -11.17406 -11.16546 -11.08344 -10.91088 -10.77982 -10.74758 -10.43904 -10.28400 -9.99173 -9.25375 -8.91303 -8.44573 -8.27204 -7.94504 -7.66689 -6.06440 -4.12219 1.18950 2.48731 3.08651 3.29265 3.36222 3.38757 3.41196 3.56058 4.14623 4.41308 4.44863 4.61723 4.77554 4.82864 5.03053 5.11264 5.15159 5.25251 5.30925 5.32955 5.39304 5.50918 5.58785 5.67949 5.74877 5.78387 5.85765 5.88067 5.97420 6.14314 6.15312 6.22244 6.40693 6.48366 6.59851 6.64082 6.67317 6.77564 6.81903 7.01944 7.31237 7.46761 7.49482 7.61933 7.65269 7.79736 8.04831 8.29050 8.89851 9.53439 10.99404 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012613 B = 0.004710 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.381751 B = 5943.703863 C = 6528.344922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.271 3.729 3 H 0.055 0.945 4 C -0.517 4.517 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.991 5.991 13 C 0.109 3.891 14 S 2.783 3.217 15 O -0.994 6.994 16 O -0.951 6.951 17 N -1.009 6.009 18 C 0.124 3.876 19 C -0.128 4.128 20 C -0.122 4.122 21 C 0.228 3.772 22 H 0.084 0.916 23 C 0.006 3.994 24 C -0.159 4.159 25 C -0.196 4.196 26 C -0.020 4.020 27 N -0.445 5.445 28 C 0.073 3.927 29 H 0.010 0.990 30 H 0.092 0.908 31 H 0.033 0.967 32 H 0.262 0.738 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.113 0.887 43 H 0.132 0.868 44 H 0.159 0.841 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 6.546 15.345 17.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.168 3.832 3 H 0.073 0.927 4 C -0.556 4.556 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.833 5.833 13 C -0.037 4.037 14 S 2.794 3.206 15 O -0.978 6.978 16 O -0.934 6.934 17 N -0.846 5.846 18 C -0.002 4.002 19 C -0.167 4.167 20 C -0.161 4.161 21 C 0.120 3.880 22 H 0.102 0.898 23 C -0.106 4.106 24 C -0.184 4.184 25 C -0.221 4.221 26 C -0.149 4.149 27 N -0.122 5.122 28 C -0.069 4.069 29 H 0.029 0.971 30 H 0.111 0.889 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.131 0.869 43 H 0.150 0.850 44 H 0.176 0.824 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.620 6.822 15.130 16.987 hybrid contribution -0.008 -0.459 -1.091 1.183 sum -3.628 6.363 14.039 15.835 Atomic orbital electron populations 1.22124 0.98378 0.99709 1.00469 1.18681 0.91146 0.92790 0.80603 0.92724 1.21335 1.31378 1.12895 0.90033 0.92001 1.24894 0.94990 0.94998 0.98978 1.69850 1.36753 1.22783 1.23700 0.86500 0.79345 0.79285 0.82326 1.20657 1.21136 1.19802 1.57842 1.70255 1.19652 1.35580 1.21153 1.01622 0.82167 0.98801 1.02012 0.73476 0.72765 0.72313 1.93537 1.72428 1.60096 1.71704 1.93695 1.69282 1.59441 1.71019 1.59348 1.66374 1.17861 1.40972 1.21856 0.93264 0.96992 0.88071 1.22735 0.97558 0.94397 1.02008 1.22721 0.97821 0.97791 0.97739 1.19373 0.90001 0.79239 0.99433 0.89795 1.20394 0.96752 0.82706 1.10726 1.20314 0.91851 0.97830 1.08412 1.20783 0.98872 0.91996 1.10464 1.21645 0.82698 0.99078 1.11456 1.43611 1.06806 1.05021 1.56742 1.22002 0.87551 0.95005 1.02357 0.97142 0.88932 0.94779 0.92778 0.93454 0.93582 0.90671 0.90869 0.91544 0.90141 0.90297 0.90541 0.90274 0.86949 0.84968 0.82374 0.91268 0.90038 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.96 37.16 0.33 -2.98 16 2 C 0.27 6.69 2.60 -69.08 -0.18 6.51 16 3 H 0.06 1.51 7.05 -51.93 -0.37 1.14 16 4 C -0.52 -14.12 8.37 -34.44 -0.29 -14.41 16 5 H 0.06 1.70 7.65 -52.48 -0.40 1.30 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.36 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.99 -21.34 3.12 -115.85 -0.36 -21.70 16 13 C 0.11 2.02 9.44 59.84 0.57 2.59 16 14 S 2.78 58.51 4.92 -107.50 -0.53 57.98 16 15 O -0.99 -21.91 16.84 -57.17 -0.96 -22.87 16 16 O -0.95 -23.23 13.35 -57.17 -0.76 -24.00 16 17 N -1.01 -16.67 3.10 -105.76 -0.33 -17.00 16 18 C 0.12 1.58 7.05 -2.65 -0.02 1.56 16 19 C -0.13 -1.25 7.07 -24.70 -0.17 -1.42 16 20 C -0.12 -1.28 5.85 -24.90 -0.15 -1.43 16 21 C 0.23 3.44 2.95 -68.10 -0.20 3.24 16 22 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 23 C 0.01 0.11 5.55 -81.79 -0.45 -0.35 16 24 C -0.16 -2.99 8.16 -39.78 -0.32 -3.31 16 25 C -0.20 -3.22 10.86 -39.78 -0.43 -3.65 16 26 C -0.02 -0.27 11.43 -16.75 -0.19 -0.47 16 27 N -0.44 -6.23 3.15 -119.90 -0.38 -6.61 16 28 C 0.07 0.68 10.36 59.85 0.62 1.30 16 29 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 31 H 0.03 0.72 6.66 -51.93 -0.35 0.38 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.72 7.85 -51.93 -0.41 0.31 16 35 H 0.07 1.33 6.44 -51.93 -0.33 1.00 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.79 7.84 -51.93 -0.41 0.38 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.11 2.27 6.01 -52.48 -0.32 1.95 16 43 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.08 0.77 7.77 -51.93 -0.40 0.36 16 LS Contribution 379.80 15.07 5.72 5.72 Total: -1.00 -34.49 379.80 -10.48 -44.97 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.51 Total: 2.52 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -0.99 Total: -11.17 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -0.44 Total: -69.53 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -1.73 Total: -46.87 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 58.51 SS G_CDS: -0.53 Total: 57.98 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.49 -10.48 -44.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282953308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.067 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds